Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UBA	42080	2024-11-16	2023-09-22	3.2	3.46	3.22	3.4	0.011	1.25	0.0	0.10	23.38	0.01	2.202	28.19	7.20	8.2	89.7	2.0	-3.80	0.72	0.77	2.89	3.4	0.004	0.71	0.0	0.04	22.01	0.01	2.374	16.06	2.80	5.9	93.6	0.6	0.10	0.82	0.75	0.78	2.01	10299	897	9	143	0	0	0	logfile
✔	8UB7	42077	2024-11-16	2023-09-22	3.2	3.38	3.19	3.3	0.011	1.53	0.0	0.10	25.46	0.01	2.230	13.19	20.48	9.1	88.6	2.3	-3.80	0.64	0.72	2.49	3.3	0.004	0.68	0.0	0.04	22.50	0.01	2.062	11.31	4.02	6.0	93.4	0.6	0.16	1.24	0.77	0.83	2.20	10399	893	10	148	2	0	0	logfile
✔	8UBF	42085	2024-11-15	2023-09-22	3.61	3.77	3.56	3.6	0.007	0.98	0.0	0.05	24.77	0.01	2.306	14.72	22.69	9.2	87.6	3.2	-3.90	0.73	0.73	2.15	3.6	0.004	0.77	0.0	0.04	21.37	0.01	2.256	14.72	2.99	7.3	92.5	0.2	-0.13	1.41	0.76	0.75	1.64	9291	882	8	102	0	0	0	logfile
✔	8WH0	37524	2024-11-19	2023-09-22	2.51	2.75	2.61	2.8	0.004	0.54	0.0	0.04	18.91	0.00	1.989	11.99	0.15	4.2	95.6	0.1	0.26	0.72	0.79	3.71	2.8	0.003	0.57	0.0	0.04	17.90	0.00	2.050	3.64	2.07	2.6	97.3	0.1	0.44	0.28	0.68	0.86	3.69	20548	2733	12	5	9	0	0	logfile
✔	8UBC	42082	2024-11-15	2023-09-22	3.29	3.39	3.14	3.3	0.007	1.06	0.0	0.05	25.64	0.01	2.145	37.84	25.31	10.5	84.9	4.6	-5.01	0.69	0.73	2.33	3.3	0.004	0.80	0.0	0.04	22.61	0.01	2.307	22.97	5.17	8.0	91.7	0.3	-0.94	1.35	0.74	0.75	1.21	9092	880	8	93	0	0	0	logfile
✔	8UB9	42079	2024-11-16	2023-09-22	3.07	3.37	3.15	3.3	0.011	1.29	1.0	0.10	24.95	0.01	2.190	21.06	18.47	9.3	87.7	3.0	-3.63	0.69	0.76	2.93	3.3	0.004	0.71	0.0	0.04	22.50	0.01	2.173	14.73	2.28	6.0	93.5	0.5	-0.05	0.82	0.71	0.77	2.07	10370	893	9	148	0	0	0	logfile
✔	8UB8	42078	2024-11-16	2023-09-22	3.28	3.44	3.22	3.4	0.011	1.43	0.0	0.11	23.56	0.01	1.887	27.19	6.27	8.7	89.0	2.3	-4.02	0.65	0.72	3.22	3.4	0.003	0.62	0.0	0.03	21.98	0.00	2.359	11.65	2.67	5.8	93.8	0.5	0.52	1.19	0.74	0.80	3.22	10299	897	9	143	0	0	0	logfile
✔	8UBD	42083	2024-11-16	2023-09-22	3.05	3.26	3.05	3.2	0.012	1.62	2.0	0.12	25.59	0.01	2.132	43.56	20.43	10.2	86.1	3.8	-3.87	0.58	0.63	2.55	3.2	0.003	0.70	0.0	0.04	22.77	0.00	2.144	18.30	3.49	6.5	93.3	0.2	-0.09	1.70	0.69	0.72	2.16	10368	890	9	149	0	0	0	logfile
✔	8WGX	37520	2024-11-15	2023-09-22	3.47	3.84	3.53	3.8	0.003	0.54	0.0	0.04	16.22	0.00	2.283	4.10	0.22	3.3	96.7	0.0	1.83	0.56	0.74	1.75	3.8	0.003	0.52	0.0	0.04	16.33	0.00	2.167	3.76	2.17	3.1	96.9	0.0	1.64	0.44	0.56	0.77	2.08	8760	547	2	0	2	0	4363	logfile
✔	8WH8	37533	2024-11-17	2023-09-22	3.6	3.66	3.57	3.5	0.013	1.40	1.0	0.07	25.12	0.01	2.300	14.01	0.72	7.4	91.7	0.9	-3.35	0.82	0.81	1.31	3.5	0.003	0.64	0.0	0.03	25.58	0.00	2.343	9.10	1.64	4.4	95.5	0.1	1.61	0.97	0.84	0.83	0.79	14304	1149	12	250	1	0	0	logfile
✔	8WH5	37529	2024-11-17	2023-09-22	3.58	3.82	3.52	3.5	0.012	1.35	0.0	0.07	25.45	0.01	2.219	14.70	0.91	7.4	91.8	0.8	-3.46	0.85	0.80	1.13	3.5	0.004	0.64	0.0	0.03	25.85	0.00	2.506	7.99	2.24	4.4	95.3	0.3	1.27	1.01	0.88	0.85	1.05	14663	1156	11	266	0	0	0	logfile
✔	8WGW	37517	2024-11-14	2023-09-22	2.9	3.23	3.07	3.2	0.004	0.59	0.0	0.04	19.74	0.00	2.167	9.11	0.14	4.4	95.6	0.0	-0.16	0.66	0.79	3.06	3.2	0.003	0.57	0.0	0.04	16.81	0.00	2.581	6.08	1.87	4.3	95.7	0.0	0.10	0.99	0.62	0.78	2.86	6564	794	5	0	9	0	0	logfile
✔	8WH9	37535	2024-11-17	2023-09-22	3.31	3.58	3.37	3.4	0.009	1.19	0.0	0.07	25.84	0.01	2.216	13.31	1.08	7.4	91.7	0.9	-2.77	0.81	0.72	0.93	3.3	0.003	0.64	0.0	0.04	26.03	0.00	2.497	7.39	1.77	5.5	94.4	0.1	1.39	1.93	0.87	0.86	1.07	15328	1188	12	284	2	0	0	logfile
✔	8WGR	37515	2024-11-15	2023-09-22	2.75	3.15	2.82	3.1	0.004	0.71	0.0	0.04	17.04	0.00	2.026	4.64	2.38	3.1	96.7	0.2	1.68	0.54	0.77	1.91	3.1	0.003	0.57	0.0	0.04	17.08	0.00	2.474	2.94	1.08	3.1	96.9	0.0	1.66	1.22	0.53	0.77	3.18	8830	548	2	0	4	34	4371	logfile
✔	8WHA	37537	2024-11-19	2023-09-22	4.05	3.88	4.03	3.7	0.010	1.29	0.0	0.07	24.53	0.01	2.216	14.72	1.40	8.5	90.6	0.9	-3.09	0.83	0.78	—	3.6	0.003	0.70	0.0	0.04	23.75	0.00	2.333	9.72	0.07	5.7	94.2	0.1	0.43	1.44	0.86	0.82	—	19084	1646	14	284	4	0	0	logfile
✔	8UAH	42064	2024-11-14	2023-09-21	3.3	3.50	3.24	3.5	0.005	1.03	0.0	0.05	20.84	0.01	2.182	11.87	3.90	13.0	86.4	0.7	-4.43	0.72	0.83	1.72	3.5	0.005	1.41	1.0	0.05	20.11	0.00	2.229	9.47	5.85	14.5	85.0	0.4	-3.92	0.88	0.73	0.85	2.03	3534	451	2	0	0	0	0	logfile
✔	8QMA	18496	2024-11-19	2023-09-21	3.5	2.52	—	1.8	0.004	0.69	0.0	0.05	13.65	0.01	1.997	5.82	0.74	4.0	95.7	0.2	-1.28	0.80	0.74	3.41	1.7	0.005	0.64	0.0	0.04	15.15	0.00	1.855	7.55	1.53	3.0	96.9	0.0	0.72	1.19	0.82	0.78	2.90	52064	6421	23	0	4	0	0	logfile
✔	8WGE	37511	2024-11-17	2023-09-21	3.4	3.15	3.27	3.2	0.002	0.44	0.0	0.04	15.64	0.00	2.292	6.70	0.34	1.8	98.2	0.0	0.72	0.68	0.86	2.82	3.2	0.003	0.53	0.0	0.04	16.20	0.00	2.558	6.36	2.09	2.7	97.3	0.0	1.19	0.28	0.67	0.86	2.36	13515	1740	10	0	5	0	0	logfile
✔	8WG3	37501	2024-11-14	2023-09-20	3.4	3.61	3.39	3.6	0.009	1.47	1.0	0.08	16.49	0.01	2.528	0.86	3.30	5.6	94.4	0.0	-2.32	0.50	0.75	2.29	3.6	0.003	0.65	0.0	0.04	16.09	0.00	2.367	6.47	2.68	3.2	96.8	0.0	1.56	1.70	0.55	0.76	0.95	4585	548	2	0	4	0	0	logfile
✔	8WG5	37503	2024-11-17	2023-09-20	3.05	3.73	3.03	3.0	0.003	0.59	0.0	0.04	26.06	0.00	2.099	12.21	0.32	2.6	97.4	0.0	1.36	0.83	0.71	0.29	3.0	0.005	0.70	0.0	0.04	26.95	0.00	2.079	10.80	2.42	2.5	97.5	0.0	1.47	1.58	0.91	0.87	1.21	14965	1135	12	294	0	0	0	logfile

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