Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TYC	41713	2024-11-16	2023-08-24	3.3	3.96	3.46	3.7	0.021	1.75	0.0	0.15	16.24	0.02	2.365	2.90	0.00	3.1	96.9	0.0	0.44	0.75	0.78	2.83	3.7	0.003	0.91	0.0	0.05	13.98	0.00	2.194	8.01	2.00	3.5	96.5	0.0	0.61	1.68	0.74	0.81	2.77	10628	1058	39	0	295	0	0	logfile
✔	8TXU	41705	2024-11-18	2023-08-24	3.22	3.61	3.48	3.6	0.005	0.94	0.0	0.06	17.72	0.01	1.731	8.16	0.37	8.1	91.9	0.0	-2.05	0.63	0.63	1.45	3.6	0.006	0.88	0.0	0.05	16.50	0.00	2.301	19.52	3.89	10.2	89.7	0.0	-2.54	1.25	0.67	0.73	1.46	17503	2163	23	0	44	0	0	logfile
✔	8Ki8	37254	2024-11-17	2023-08-23	3.2	3.44	3.24	3.5	0.004	0.84	0.0	0.05	17.21	0.01	2.271	4.53	2.35	6.9	93.0	0.1	-1.88	0.73	0.76	1.74	3.4	0.002	0.60	0.0	0.04	17.42	0.00	2.409	7.39	3.55	6.2	93.7	0.1	0.20	0.32	0.72	0.78	1.77	13264	1621	2	10	0	0	0	logfile
✔	8KiA	37256	2024-11-17	2023-08-23	4.0	4.04	3.87	3.9	0.006	1.34	0.0	0.06	16.76	0.01	2.171	8.15	2.34	7.6	92.1	0.3	-2.64	0.73	0.71	—	3.9	0.003	0.84	0.0	0.05	17.18	0.00	2.224	16.53	3.65	7.7	92.1	0.2	-0.87	1.17	0.74	0.73	—	12717	1580	1	0	0	0	0	logfile
✔	8Ki7	37253	2024-11-18	2023-08-23	3.7	4.02	3.86	3.9	0.005	1.07	0.0	0.06	18.16	0.01	2.221	8.15	3.86	7.3	92.5	0.2	-2.08	0.75	0.70	0.86	3.9	0.004	0.84	0.0	0.05	18.46	0.00	2.393	18.66	3.65	8.1	91.8	0.2	-0.68	0.87	0.78	0.79	0.99	16784	2003	4	32	0	0	0	logfile
✔	8Ki6	37252	2024-11-17	2023-08-23	3.4	3.70	3.46	3.7	0.005	1.09	2.0	0.06	16.71	0.01	2.238	5.31	2.06	7.1	92.5	0.3	-1.93	0.71	0.72	0.99	3.7	0.004	0.69	0.0	0.04	17.17	0.00	2.443	8.56	3.65	6.9	92.9	0.2	-0.09	0.47	0.70	0.76	0.71	12751	1580	2	0	2	0	0	logfile
✔	8W4A	37264	2024-11-15	2023-08-23	2.69	2.93	2.74	3.0	0.006	0.57	0.0	0.04	14.93	0.00	2.212	5.31	0.00	1.3	98.7	0.0	1.30	0.64	0.87	4.21	3.0	0.003	0.51	0.0	0.04	15.42	0.00	2.544	4.32	0.87	1.1	98.9	0.0	2.20	0.24	0.68	0.88	3.67	9588	1066	8	0	86	0	0	logfile
✔	8QAT	18302	2024-11-14	2023-08-23	3.2	2.97	3.18	3.4	0.005	1.03	0.0	0.05	16.20	0.01	2.192	3.47	0.35	1.9	98.0	0.1	-1.94	0.68	0.77	2.23	3.3	0.003	0.65	0.0	0.04	17.18	0.00	2.354	7.52	2.12	1.9	98.0	0.1	1.97	2.41	0.68	0.77	1.42	7758	970	4	0	0	0	0	logfile
✔	8KiC	37257	2024-11-15	2023-08-23	2.5	3.35	2.69	3.1	0.005	0.82	0.0	0.05	17.67	0.01	2.171	5.51	3.54	2.3	97.3	0.4	-0.24	0.77	0.75	2.14	3.1	0.004	0.65	0.0	0.05	17.15	0.00	2.570	4.76	2.99	2.6	97.1	0.3	0.59	1.08	0.72	0.82	1.81	8589	1168	9	0	20	0	0	logfile
✔	8QAU	18304	2024-11-16	2023-08-23	3.54	4.46	3.61	4.1	0.004	0.69	0.0	0.04	17.84	0.00	1.980	12.57	0.00	3.5	96.5	0.1	0.50	0.56	0.64	1.74	4.1	0.003	0.76	0.0	0.05	17.07	0.00	1.919	10.65	1.95	3.2	96.8	0.1	1.29	0.77	0.61	0.76	1.44	10137	1347	8	1	3	0	0	logfile
✔	8W41	37260	2024-11-16	2023-08-23	3.54	2.42	3.62	2.0	0.008	0.91	2.0	0.06	15.40	0.01	1.918	17.98	1.63	5.0	94.9	0.1	-1.05	0.72	0.71	2.32	2.1	0.003	0.70	0.0	0.04	16.95	0.00	2.014	11.09	2.33	2.8	97.1	0.1	0.66	0.54	0.71	0.70	1.89	11859	1455	5	0	7	0	0	logfile
✔	8QA5	18299	2024-11-16	2023-08-22	3.14	3.29	3.20	3.3	0.016	1.94	17.0	0.17	15.49	0.01	2.267	2.48	1.48	4.7	95.1	0.1	-0.88	0.61	0.65	2.67	3.3	0.005	0.70	0.0	0.04	15.96	0.00	2.260	8.94	1.27	6.5	93.5	0.0	0.70	1.15	0.64	0.70	1.58	10376	814	4	0	1	0	4809	logfile
✔	8TX1	41674	2024-11-17	2023-08-22	3.62	4.05	3.79	3.4	0.006	0.92	0.0	0.04	15.94	0.01	2.136	12.74	0.20	6.6	93.2	0.2	0.18	0.34	0.51	0.26	3.3	0.004	0.77	0.0	0.04	16.17	0.01	2.257	13.41	3.16	8.9	90.8	0.3	-1.16	1.48	0.35	0.56	0.75	13687	1894	1	0	0	0	0	logfile
✔	8QA4	18298	2024-11-14	2023-08-22	2.8	2.99	2.83	3.0	0.023	2.29	24.0	0.20	15.90	0.01	2.296	3.62	1.45	3.5	96.5	0.0	-2.38	0.63	0.78	3.60	3.0	0.003	0.65	0.0	0.04	18.13	0.01	2.427	6.84	1.69	3.3	96.7	0.0	0.01	1.57	0.60	0.80	2.79	7544	462	6	0	0	28	3724	logfile
✔	8QA6	18300	2024-11-19	2023-08-22	2.91	3.22	3.02	3.2	0.010	1.08	0.0	0.10	17.51	0.01	2.072	6.69	0.52	3.4	96.6	0.0	-0.54	0.60	0.80	3.35	3.2	0.003	0.58	0.0	0.04	17.62	0.00	2.359	5.57	1.25	2.3	97.7	0.0	1.76	0.92	0.61	0.81	2.97	17808	1106	4	0	6	0	8720	logfile
✔	8KHP	37247	2024-11-18	2023-08-22	3.67	4.90	3.71	3.6	0.002	0.62	0.0	0.04	11.29	0.00	2.213	5.29	0.00	3.2	96.3	0.4	1.44	0.86	0.80	1.59	3.6	0.002	0.53	0.0	0.04	12.67	0.00	2.485	3.96	0.65	3.8	96.1	0.1	1.62	1.27	0.90	0.87	1.29	16023	2702	6	0	0	0	0	logfile
✔	8TX3	41676	2024-11-18	2023-08-22	2.99	3.24	3.08	3.3	0.005	0.87	2.0	0.06	18.84	0.01	2.121	5.69	0.26	5.4	94.6	0.0	-1.17	0.65	0.83	3.50	3.2	0.004	0.65	0.0	0.05	15.28	0.00	2.451	6.52	2.00	5.7	94.3	0.0	-0.72	0.42	0.68	0.87	3.62	17923	2172	29	0	68	0	0	logfile
✔	8KHR	37249	2024-11-17	2023-08-22	3.25	3.87	3.24	3.7	0.003	0.63	0.0	0.04	16.93	0.00	2.125	8.14	0.62	7.9	92.1	0.0	-1.23	0.81	0.78	2.40	3.7	0.007	0.73	0.0	0.04	17.06	0.00	2.542	8.70	3.71	12.1	87.9	0.0	-1.76	0.41	0.83	0.83	2.25	8320	1138	5	0	0	0	0	logfile
✔	8TWE	41667	2024-11-17	2023-08-21	2.55	3.04	2.52	2.9	0.003	0.48	0.0	0.04	10.13	0.00	1.425	1.05	0.13	0.5	99.5	0.0	1.05	0.76	0.87	5.13	2.9	0.002	0.51	0.0	0.04	13.36	0.00	2.398	1.88	0.27	1.5	98.5	0.0	1.13	0.82	0.76	0.89	4.56	13319	833	4	0	0	0	6636	logfile
✔	8Q9T	18288	2024-11-20	2023-08-21	2.84	3.06	2.88	3.0	0.003	0.47	0.0	0.04	13.30	0.00	2.200	3.21	0.00	2.4	97.6	0.0	1.09	0.66	0.82	3.48	3.0	0.003	0.51	0.0	0.04	15.06	0.00	2.560	2.42	0.80	2.2	97.8	0.0	1.48	0.25	0.76	0.89	3.09	20927	2809	5	4	0	0	0	logfile

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