Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8KGL	37225	2024-11-15	2023-08-19	4.3	4.47	4.30	4.3	0.007	1.06	0.0	0.05	9.44	0.01	2.276	8.04	0.00	7.9	92.1	0.0	-3.21	0.81	0.76	—	4.3	0.002	0.60	0.0	0.04	11.12	0.00	2.474	8.97	0.00	5.1	94.9	0.0	0.24	0.91	0.81	0.75	—	8084	984	2	0	0	0	0	logfile
✔	8KGV	37233	2024-11-14	2023-08-19	3.2	3.67	3.27	3.6	0.005	0.80	0.0	0.05	13.39	0.01	2.297	10.33	0.23	1.5	98.3	0.2	0.35	0.52	0.76	2.25	3.6	0.003	0.67	0.0	0.04	15.29	0.00	2.560	10.45	2.53	2.7	97.3	0.0	1.68	1.03	0.51	0.76	1.75	4056	533	2	0	1	0	0	logfile
✔	8Q8W	18263	2024-11-14	2023-08-19	2.85	2.92	2.74	2.9	0.011	1.75	0.0	0.09	11.10	0.01	2.483	0.00	0.00	2.9	97.1	0.0	-1.38	0.29	0.78	6.35	2.9	0.002	0.49	0.0	0.05	15.80	0.00	2.527	0.45	1.08	0.7	99.3	0.0	-0.68	1.98	0.39	0.89	6.48	6618	429	6	0	0	0	3372	logfile
✔	8KGi	37222	2024-11-14	2023-08-19	3.2	3.65	3.28	3.6	0.003	0.67	0.0	0.04	13.82	0.00	2.303	10.16	0.00	2.1	97.9	0.0	2.76	0.52	0.73	2.71	3.6	0.004	0.74	0.0	0.05	15.76	0.00	2.478	12.33	1.88	3.3	96.7	0.0	2.94	0.43	0.52	0.75	2.31	5766	782	2	0	0	0	0	logfile
✔	8Q96	18269	2024-11-13	2023-08-19	3.09	3.01	2.64	3.2	0.009	1.24	0.0	0.07	10.14	0.01	2.529	1.50	0.00	5.6	94.4	0.0	-3.54	0.47	0.86	5.83	3.1	0.009	0.85	0.0	0.05	14.67	0.00	2.579	3.49	3.50	6.5	93.5	0.0	-3.61	1.99	0.46	0.85	4.83	2100	224	12	0	88	0	0	logfile
✔	8Q92	18268	2024-11-13	2023-08-19	3.05	2.89	2.63	3.1	0.008	1.37	0.0	0.09	13.95	0.01	2.531	0.94	1.23	8.7	91.3	0.0	-3.17	0.37	0.86	4.77	3.1	0.004	0.73	0.0	0.05	15.65	0.00	2.616	4.21	2.06	5.8	94.2	0.0	-2.76	0.26	0.32	0.83	3.35	2091	282	3	0	0	0	0	logfile
✔	8Q8C	18250	2024-11-14	2023-08-18	1.92	1.98	1.90	2.0	0.011	1.66	0.0	0.08	10.69	0.01	2.505	0.00	0.27	1.2	98.8	0.0	-1.44	0.21	0.65	7.52	1.9	0.002	0.52	0.0	0.05	15.47	0.00	2.540	0.60	0.54	1.7	98.3	0.0	-0.98	1.22	0.39	0.89	7.72	6618	429	6	0	0	0	3372	logfile
✔	8Q88	18249	2024-11-14	2023-08-18	2.95	2.99	2.96	3.1	0.011	1.82	1.0	0.09	9.88	0.01	2.489	0.85	0.25	4.3	95.7	0.0	-1.51	0.41	0.83	6.19	3.1	0.004	0.73	0.0	0.05	13.95	0.00	2.617	5.52	2.02	1.6	98.4	0.0	-2.34	1.32	0.40	0.87	4.83	3468	456	6	0	0	0	0	logfile
✔	8Q8V	18262	2024-11-14	2023-08-18	3.8	3.56	3.64	3.9	0.012	2.00	2.0	0.09	12.46	0.01	2.510	1.71	0.00	6.4	93.6	0.0	-2.75	0.30	0.69	4.41	4.0	0.003	0.65	0.0	0.05	14.41	0.00	2.496	9.82	0.51	5.5	94.5	0.0	-3.15	2.98	0.32	0.78	4.63	7032	450	6	0	0	0	3588	logfile
✔	8Q8U	18261	2024-11-14	2023-08-18	3.3	3.53	3.24	3.8	0.011	1.97	3.0	0.11	12.59	0.01	2.505	0.00	0.00	6.3	93.7	0.0	-3.01	0.42	0.76	3.25	3.8	0.002	0.58	0.0	0.05	13.40	0.00	2.632	3.02	0.27	1.4	98.6	0.0	-2.29	1.34	0.45	0.77	2.76	6642	426	6	0	0	0	3396	logfile
✔	8KGF	37219	2024-11-16	2023-08-18	2.9	3.60	2.93	3.3	0.011	1.47	0.0	0.08	13.54	0.01	1.960	8.69	0.44	5.0	95.0	0.0	-1.55	0.83	0.78	3.93	3.3	0.004	0.57	0.0	0.04	15.18	0.00	2.265	4.30	0.80	2.6	97.4	0.0	0.89	0.95	0.84	0.81	3.02	10872	1261	4	29	2	0	0	logfile
✔	8Q8M	18255	2024-11-14	2023-08-18	2.95	3.13	2.89	3.1	0.011	1.96	7.0	0.12	11.82	0.01	2.510	0.00	0.00	7.4	92.6	0.0	-1.64	0.40	0.85	5.71	3.1	0.004	1.22	0.0	0.05	15.14	0.00	1.807	3.68	1.01	3.6	96.4	0.0	-1.68	1.08	0.41	0.87	5.80	7074	456	6	0	0	0	3606	logfile
✔	8Q8F	18253	2024-11-14	2023-08-18	2.93	2.97	2.77	3.0	0.011	1.82	0.0	0.08	12.08	0.01	2.504	0.00	0.76	5.4	94.6	0.0	-1.60	0.37	0.78	6.53	3.0	0.002	0.64	0.0	0.05	16.56	0.00	2.527	3.40	1.52	2.9	97.1	0.0	-1.75	3.51	0.42	0.89	4.01	3468	456	6	0	0	0	0	logfile
✔	8KGE	37218	2024-11-14	2023-08-18	3.8	3.74	3.72	3.7	0.004	0.87	0.0	0.05	17.21	0.01	2.103	13.80	10.88	9.3	90.5	0.2	-2.27	0.45	0.79	3.10	3.7	0.003	0.72	0.0	0.05	16.87	0.00	2.598	8.31	8.29	8.7	91.3	0.0	-2.06	0.38	0.48	0.81	2.59	3584	486	2	0	0	0	0	logfile
✔	8TVi	41643	2024-11-18	2023-08-18	3.2	3.45	3.22	3.5	0.012	1.27	0.0	0.06	10.01	0.01	1.868	1.14	0.00	2.4	97.6	0.0	0.52	0.76	0.87	4.57	3.5	0.003	0.55	0.0	0.04	12.94	0.00	2.086	2.01	0.65	1.7	98.3	0.0	0.75	0.43	0.72	0.89	4.62	15324	2052	8	0	8	0	0	logfile
✔	8Q8R	18258	2024-11-14	2023-08-18	2.1	1.89	2.15	1.9	0.011	1.82	6.0	0.10	11.11	0.01	2.505	0.00	0.00	11.0	89.0	0.0	-1.41	0.39	0.83	5.91	1.9	0.004	0.75	0.0	0.05	16.88	0.00	2.597	4.39	3.28	7.7	92.3	0.0	-1.65	1.06	0.44	0.88	5.86	3468	456	6	0	0	0	0	logfile
✔	8Q8L	18254	2024-11-14	2023-08-18	3.04	3.14	2.87	3.3	0.011	2.07	2.0	0.11	11.49	0.01	2.539	0.29	0.00	5.3	94.5	0.2	-2.17	0.33	0.74	5.41	3.2	0.005	0.80	0.0	0.05	14.85	0.00	2.510	4.03	2.56	3.9	96.1	0.0	-2.40	0.76	0.43	0.82	4.81	3405	447	6	0	0	0	0	logfile
✔	8TVE	41639	2024-11-15	2023-08-18	3.9	4.16	3.79	4.1	0.013	1.52	0.0	0.09	9.81	0.01	2.020	3.65	0.33	2.2	97.8	0.0	0.30	0.76	0.82	3.62	4.1	0.003	0.64	0.0	0.04	14.20	0.00	2.550	4.09	2.66	3.4	96.4	0.2	1.80	0.64	0.79	0.85	2.35	9090	1227	6	0	6	0	0	logfile
✔	8TVG	41641	2024-11-15	2023-08-18	3.3	3.38	3.21	3.5	0.013	1.36	0.0	0.08	8.92	0.01	2.402	1.16	0.75	2.7	96.8	0.5	0.61	0.75	0.80	3.91	3.4	0.004	0.63	0.0	0.05	13.23	0.00	2.534	2.45	1.24	4.7	95.3	0.0	0.93	1.18	0.77	0.86	3.38	8310	1131	6	0	6	0	0	logfile
✔	8TVH	41642	2024-11-14	2023-08-18	3.6	3.64	3.38	3.6	0.012	1.38	0.0	0.08	12.11	0.01	2.491	1.72	0.52	2.3	97.4	0.3	1.54	0.73	0.80	3.73	3.7	0.004	0.65	0.0	0.04	15.83	0.00	2.467	4.23	2.95	3.4	96.6	0.0	2.46	0.61	0.77	0.85	3.20	6744	939	12	0	3	0	0	logfile

• ← previous
• Page 70 of 419
• next →