Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JHi	36266	2024-11-15	2023-05-23	3.2	3.84	3.46	3.8	0.004	0.71	0.0	0.05	14.30	0.01	2.158	7.15	0.00	5.4	94.6	0.0	-0.87	0.65	0.79	1.91	3.8	0.003	0.71	0.0	0.04	16.02	0.00	2.360	10.03	2.91	5.6	94.4	0.0	-0.21	0.96	0.63	0.81	1.87	8562	1077	5	0	0	0	0	logfile
✔	8P51	17436	2024-11-17	2023-05-23	3.55	4.39	3.63	4.0	0.006	0.83	0.0	0.05	13.50	0.01	2.113	4.21	0.00	4.4	95.6	0.0	-1.93	0.82	0.71	2.07	4.0	0.003	0.69	0.0	0.04	14.93	0.00	2.526	6.09	0.98	2.7	97.2	0.1	1.16	1.70	0.88	0.85	1.44	12389	1574	1	0	0	0	0	logfile
✔	8P50	17435	2024-11-17	2023-05-23	4.04	5.40	4.05	3.9	0.004	0.88	0.0	0.05	14.21	0.01	1.901	6.41	0.00	4.7	95.3	0.0	-1.98	0.62	0.03	—	3.9	0.003	0.69	0.0	0.04	14.14	0.00	1.988	6.06	0.14	3.9	96.0	0.1	0.62	1.30	0.61	0.02	—	13714	1735	3	0	2	0	0	logfile
✔	8JHK	36271	2024-11-20	2023-05-23	4.76	3.55	4.44	3.3	0.006	0.94	0.0	0.05	14.92	0.01	2.041	36.60	0.00	11.8	88.2	0.0	-3.03	0.76	0.76	—	3.4	0.003	0.78	0.0	0.05	15.06	0.01	2.372	18.55	0.00	7.4	92.6	0.0	-1.43	1.45	0.76	0.75	—	20512	2509	3	0	0	0	0	logfile
✔	8JHG	36265	2024-11-18	2023-05-23	3.58	3.41	3.62	3.4	0.004	0.59	0.0	0.03	26.86	0.00	2.152	8.47	0.92	5.4	94.6	0.0	0.29	0.81	0.83	1.74	3.4	0.004	0.60	0.0	0.03	26.74	0.00	2.471	7.69	0.92	5.8	94.2	0.0	0.87	1.34	0.81	0.84	1.08	14829	1040	12	320	2	0	0	logfile
✔	8P53	17445	2024-11-18	2023-05-23	2.7	2.29	2.79	2.0	0.004	0.65	0.0	0.04	13.22	0.00	1.943	8.14	0.11	3.2	96.8	0.0	-0.24	0.79	0.81	3.54	2.0	0.003	0.80	0.0	0.04	16.66	0.00	1.699	7.87	2.17	3.5	96.5	0.0	0.56	0.45	0.80	0.82	2.95	16299	2071	8	0	4	0	0	logfile
✔	8JHF	36264	2024-11-18	2023-05-23	3.68	3.48	3.63	3.5	0.004	0.61	0.0	0.03	27.23	0.00	2.111	8.03	0.70	4.8	95.2	0.0	0.59	0.80	0.82	1.35	3.5	0.004	0.59	0.0	0.03	27.72	0.00	2.477	7.20	2.11	4.7	95.3	0.0	1.01	0.39	0.80	0.83	0.98	14703	1029	12	320	2	0	0	logfile
✔	8SXJ	40854	2024-11-19	2023-05-22	4.0	4.15	4.01	4.2	0.019	1.76	7.0	0.09	13.38	0.02	2.555	0.19	1.10	7.0	92.3	0.7	-1.09	0.63	0.78	—	4.2	0.005	0.76	0.0	0.05	16.06	0.00	2.459	9.06	2.71	5.6	94.3	0.0	-0.50	0.78	0.66	0.80	—	19050	2415	12	0	0	0	0	logfile
✔	8JH7	36258	2024-11-14	2023-05-22	3.2	2.35	3.28	2.1	0.003	0.77	0.0	0.05	13.57	0.01	2.240	6.25	0.00	5.0	95.0	0.0	-1.48	0.74	0.73	2.56	2.1	0.004	0.72	0.0	0.04	15.95	0.00	2.390	9.15	2.05	5.2	94.7	0.1	0.05	0.57	0.75	0.76	2.07	7663	988	4	0	0	0	0	logfile
✔	8JH5	36254	2024-11-14	2023-05-22	3.7	3.92	3.73	3.9	0.006	0.96	0.0	0.05	9.93	0.01	2.031	3.06	0.00	5.9	94.1	0.0	-5.76	0.61	0.83	2.59	3.9	0.003	0.70	0.0	0.04	14.34	0.00	2.454	5.36	3.14	2.7	97.3	0.0	-0.33	0.73	0.60	0.82	1.19	7734	988	6	0	2	0	0	logfile
✔	8SXF	40850	2024-11-16	2023-05-22	3.92	4.19	3.95	4.0	0.002	0.48	0.0	0.04	15.08	0.00	2.063	9.57	0.00	3.7	96.3	0.0	1.25	0.79	0.72	0.88	4.0	0.003	0.60	0.0	0.04	16.70	0.00	2.476	9.21	2.26	2.9	97.1	0.0	1.12	0.57	0.80	0.73	0.65	11321	1471	5	0	6	0	0	logfile
✔	8SXH	40852	2024-11-19	2023-05-22	3.94	4.17	3.93	4.1	0.003	0.46	0.0	0.04	13.70	0.00	1.996	7.04	0.00	4.2	95.8	0.0	1.11	0.80	0.77	1.36	4.1	0.003	0.65	0.0	0.04	15.65	0.00	2.465	7.75	1.38	3.4	96.6	0.0	0.86	0.51	0.80	0.77	1.16	19719	2604	12	0	21	0	0	logfile
✔	8SXE	40849	2024-11-15	2023-05-22	3.55	3.79	3.56	3.8	0.002	0.47	0.0	0.04	14.58	0.00	2.089	6.48	0.00	3.6	96.4	0.0	0.44	0.75	0.76	1.64	3.8	0.004	0.62	0.0	0.04	16.61	0.00	2.483	6.90	2.50	4.5	95.5	0.0	0.51	0.51	0.76	0.77	1.21	8285	1094	6	0	7	0	0	logfile
✔	8SXN	40855	2024-11-18	2023-05-22	4.04	4.34	4.06	4.1	0.012	1.26	0.0	0.06	12.20	0.01	2.369	2.31	0.05	3.0	95.8	1.1	-0.38	0.87	0.82	—	4.1	0.003	0.65	0.0	0.04	14.12	0.00	2.413	8.49	0.00	5.5	94.1	0.4	0.21	1.87	0.87	0.82	—	17708	2200	6	0	4	0	0	logfile
✔	8SXG	40851	2024-11-16	2023-05-22	4.14	4.41	4.12	4.2	0.002	0.50	0.0	0.04	14.01	0.00	1.889	8.99	0.00	3.3	96.7	0.0	0.78	0.83	0.74	—	4.2	0.007	0.78	0.0	0.05	14.72	0.01	2.406	15.62	0.00	5.3	94.7	0.0	0.10	0.49	0.83	0.77	—	11372	1477	5	0	6	0	0	logfile
✔	8JGL	36238	2024-11-20	2023-05-21	3.14	3.24	3.07	3.3	0.004	0.62	0.0	0.04	14.10	0.01	2.078	8.85	0.00	1.2	98.8	0.0	0.40	0.55	0.71	2.50	3.3	0.003	0.53	0.0	0.04	15.16	0.00	2.279	4.98	0.79	2.3	97.7	0.0	1.79	1.07	0.56	0.75	2.24	21662	1368	6	0	2	2	10868	logfile
✔	8JGB	36229	2024-11-14	2023-05-20	2.84	2.28	2.92	2.0	0.010	1.22	2.0	0.07	15.63	0.01	2.230	7.27	2.89	6.4	93.6	0.0	-2.42	0.83	0.82	3.66	2.0	0.004	0.69	0.0	0.04	16.63	0.00	2.544	4.23	3.67	3.8	96.2	0.0	-0.19	0.53	0.83	0.83	3.65	7796	1062	6	0	0	0	0	logfile
✔	8SX8	40827	2024-11-19	2023-05-20	3.5	3.82	3.45	3.7	0.005	0.84	0.0	0.06	12.22	0.01	2.132	0.95	0.10	2.0	98.0	0.0	-1.93	0.62	0.79	2.30	3.7	0.004	0.58	0.0	0.04	14.37	0.00	2.338	5.04	0.98	1.7	98.3	0.0	1.50	1.17	0.63	0.79	1.24	19025	1175	2	0	1	1	9610	logfile
✔	8SX7	40826	2024-11-19	2023-05-20	2.7	3.18	2.98	3.2	0.005	0.70	0.0	0.06	12.40	0.01	2.180	2.39	0.39	2.5	97.5	0.0	-1.48	0.54	0.65	1.29	3.2	0.004	0.60	0.0	0.04	15.61	0.00	2.251	4.58	1.55	2.0	98.0	0.0	1.60	1.38	0.55	0.77	1.94	19237	1188	2	0	1	3	9719	logfile
✔	8JGC	36230	2024-11-13	2023-05-20	3.44	3.77	3.05	3.8	0.008	1.05	0.0	0.07	15.17	0.01	2.251	23.58	4.35	9.0	90.0	1.0	-3.45	0.55	0.78	2.82	3.8	0.003	0.61	0.0	0.05	15.99	0.00	2.609	5.17	2.48	4.5	95.5	0.0	-0.08	1.31	0.54	0.79	2.63	1516	202	1	0	0	0	0	logfile

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