Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JJP	36364	2024-11-15	2023-05-31	2.9	3.15	3.04	3.1	0.003	0.60	0.0	0.04	16.87	0.01	2.202	6.48	3.84	3.6	96.4	0.0	0.22	0.64	0.86	2.55	3.1	0.003	0.56	0.0	0.04	16.49	0.00	2.569	5.55	3.74	3.8	96.2	0.0	0.66	1.22	0.64	0.86	2.86	9165	1161	7	0	1	0	0	logfile
✔	8P70	17513	2024-11-14	2023-05-30	2.0	1.98	2.01	2.0	0.006	0.62	0.0	0.04	16.72	0.00	2.202	7.34	0.90	1.3	98.5	0.2	1.67	0.67	0.79	5.37	2.0	0.003	0.60	0.0	0.04	16.59	0.01	2.486	6.56	1.08	1.5	98.4	0.2	1.82	0.19	0.67	0.80	5.01	5282	630	7	0	2	154	0	logfile
✔	8P77	17520	2024-11-14	2023-05-30	1.8	1.83	1.92	1.9	0.006	0.58	0.0	0.04	16.68	0.00	2.228	5.35	1.08	1.3	98.5	0.2	2.01	0.68	0.79	5.73	1.9	0.004	0.65	0.0	0.04	16.94	0.01	2.424	6.03	1.26	1.3	98.5	0.2	1.82	0.74	0.68	0.80	5.44	5271	630	7	0	2	137	0	logfile
✔	8P79	17522	2024-11-14	2023-05-30	1.7	1.76	1.73	1.8	0.014	1.73	0.0	0.08	14.30	0.01	2.251	3.34	0.90	2.1	97.7	0.2	-1.48	0.63	0.75	6.80	1.8	0.003	0.62	0.0	0.04	15.87	0.00	2.581	4.72	0.36	1.3	98.5	0.2	1.92	1.15	0.68	0.77	6.37	5256	630	6	0	1	180	0	logfile
✔	8JJE	36345	2024-11-14	2023-05-30	3.4	3.75	3.47	3.7	0.011	1.51	1.0	0.09	16.24	0.01	1.829	0.77	1.86	2.5	97.5	0.0	-2.00	0.70	0.83	3.16	3.7	0.004	0.64	0.0	0.04	15.58	0.00	2.250	3.85	3.01	2.8	97.2	0.0	0.27	1.35	0.72	0.82	2.58	6670	794	8	0	20	1	0	logfile
✔	8P6V	17508	2024-11-14	2023-05-30	1.9	1.76	1.97	1.9	0.005	0.62	0.0	0.04	16.30	0.00	2.221	5.67	1.26	1.8	98.1	0.2	1.53	0.64	0.77	5.52	1.9	0.005	0.69	0.0	0.05	16.84	0.01	2.544	6.75	2.35	1.6	98.2	0.2	1.00	0.77	0.65	0.78	5.32	5243	630	7	0	2	138	0	logfile
✔	8P6Y	17511	2024-11-14	2023-05-30	1.9	1.73	1.95	1.9	0.005	0.60	0.0	0.04	17.03	0.00	2.148	3.62	0.36	1.0	98.9	0.2	1.99	0.68	0.84	6.33	1.9	0.004	0.68	0.0	0.04	17.01	0.01	2.160	4.01	1.08	1.3	98.5	0.2	1.72	0.75	0.68	0.85	6.30	5266	630	7	0	3	158	0	logfile
✔	8P76	17519	2024-11-14	2023-05-30	2.0	1.89	2.02	2.0	0.005	0.61	0.0	0.04	16.64	0.00	2.258	6.57	0.90	1.3	98.5	0.2	1.97	0.66	0.79	5.30	2.0	0.003	0.64	0.0	0.04	16.72	0.00	2.397	5.98	1.08	2.1	97.7	0.2	1.80	0.26	0.66	0.79	5.31	5261	630	7	0	2	151	0	logfile
✔	8SZL	40920	2024-11-18	2023-05-30	3.12	3.99	3.18	3.6	0.004	0.65	0.0	0.04	13.64	0.00	2.040	5.54	0.00	4.2	95.8	0.0	-0.97	0.73	0.57	2.14	3.6	0.003	0.74	0.0	0.04	15.64	0.00	2.553	8.74	0.86	4.2	95.8	0.0	0.09	2.19	0.86	0.79	1.45	15081	1960	4	0	0	0	0	logfile
✔	8SZK	40919	2024-11-14	2023-05-30	3.58	2.67	3.72	2.8	0.008	1.05	0.0	0.05	17.88	0.01	2.168	18.01	0.87	8.0	91.1	0.9	-0.59	0.75	0.71	1.48	2.8	0.008	1.18	1.0	0.05	18.57	0.01	2.040	16.92	3.97	8.0	91.9	0.1	-0.43	1.39	0.74	0.74	1.45	7392	904	5	0	0	0	0	logfile
✔	8SZZ	40926	2024-11-18	2023-05-30	2.9	3.06	2.89	3.0	0.005	0.71	0.0	0.05	14.17	0.01	2.197	3.30	0.43	1.5	98.5	0.0	-1.08	0.72	0.85	3.42	3.0	0.002	0.50	0.0	0.04	17.37	0.00	2.325	3.82	1.31	1.8	98.2	0.0	2.51	0.49	0.74	0.87	2.98	48815	6504	72	0	24	0	0	logfile
✔	8SZF	40914	2024-11-17	2023-05-29	2.8	2.08	—	1.7	0.005	0.70	1.0	0.05	13.19	0.01	2.268	4.64	0.00	3.1	96.9	0.0	0.03	0.79	0.83	3.52	1.7	0.002	0.52	0.0	0.04	15.00	0.00	2.311	2.93	0.96	2.8	97.2	0.0	0.70	0.34	0.79	0.83	2.60	12813	1602	9	0	20	0	0	logfile
✔	8SZA	40905	2024-11-14	2023-05-29	2.75	3.32	2.81	3.4	0.003	0.65	0.0	0.03	15.14	0.00	2.185	8.19	0.98	0.3	99.7	0.0	2.12	0.50	0.78	1.28	3.4	0.003	0.66	0.0	0.04	15.62	0.00	2.586	9.89	1.18	0.8	99.2	0.0	3.24	0.47	0.49	0.78	1.71	4800	606	11	0	6	0	0	logfile
✔	8SZH	40916	2024-11-19	2023-05-29	3.1	2.21	—	1.8	0.006	0.78	2.0	0.11	14.62	0.01	2.196	4.04	0.00	3.8	96.2	0.0	-0.33	0.82	0.82	2.95	1.8	0.003	0.53	0.0	0.04	15.75	0.00	2.452	2.75	1.66	3.7	96.3	0.0	0.03	0.35	0.83	0.84	2.47	18062	2267	10	0	24	1	0	logfile
✔	8SZB	40907	2024-11-14	2023-05-29	3.07	3.36	3.01	3.5	0.003	0.51	0.0	0.03	16.77	0.00	2.154	9.22	0.37	1.5	98.5	0.0	2.06	0.49	0.73	0.50	3.5	0.003	0.57	0.0	0.04	16.70	0.00	2.500	7.47	4.07	1.3	98.7	0.0	4.41	0.95	0.51	0.79	1.41	4962	612	12	0	6	0	0	logfile
✔	8SZG	40915	2024-11-18	2023-05-29	3.6	2.47	—	1.9	0.006	0.85	10.0	0.11	14.08	0.01	2.281	5.68	0.11	4.8	95.2	0.0	-0.56	0.78	0.78	2.75	1.9	0.003	0.55	0.0	0.04	14.83	0.00	2.533	4.03	1.62	3.8	96.2	0.0	0.20	0.42	0.78	0.77	2.25	17571	2237	10	0	22	1	0	logfile
✔	8JJ8	36342	2024-11-14	2023-05-29	3.2	3.51	3.45	3.5	0.005	0.90	0.0	0.05	15.21	0.00	2.107	14.28	1.86	6.7	93.3	0.0	0.54	0.51	0.75	2.04	3.5	0.006	1.33	1.0	0.06	16.90	0.00	2.209	10.18	1.86	4.3	95.4	0.3	1.56	1.18	0.44	0.74	1.79	3023	375	2	0	1	0	0	logfile
✔	8SZi	40917	2024-11-18	2023-05-29	3.5	2.34	—	1.9	0.008	0.97	2.0	0.12	13.69	0.01	1.971	4.45	0.05	2.7	97.3	0.0	0.27	0.78	0.78	2.50	1.8	0.002	0.54	0.0	0.04	14.99	0.00	2.319	3.54	1.07	2.8	97.2	0.0	0.87	0.57	0.79	0.78	2.16	17868	2249	10	0	18	0	0	logfile
✔	8JJ5	36340	2024-11-17	2023-05-29	3.5	3.74	3.51	3.7	0.021	2.18	39.0	0.19	17.07	0.02	2.397	1.75	1.22	8.9	91.0	0.1	-2.93	0.38	0.61	1.08	3.7	0.004	0.72	0.0	0.04	16.13	0.00	2.171	13.96	1.49	5.4	94.6	0.0	-0.36	1.07	0.40	0.64	0.81	13594	866	10	0	14	0	6679	logfile
✔	8JiT	36327	2024-11-15	2023-05-27	2.91	3.75	2.95	3.5	0.005	0.79	1.0	0.05	14.72	0.00	2.204	30.83	4.69	5.5	94.0	0.5	-0.47	0.69	0.80	2.15	3.5	0.005	0.79	0.0	0.04	15.87	0.00	2.483	8.18	3.13	3.9	95.9	0.2	0.55	0.61	0.70	0.83	2.08	9193	1176	7	0	1	0	0	logfile

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