Table showing results for December 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8R3T	18874	2023-12-07	2023-11-10	3.1	3.18	2.95	3.4	0.011	2.12	6.0	0.11	14.98	0.01	2.582	0.55	5.45	2.0	96.2	1.8	-1.86	0.37	0.73	5.38	3.4	0.003	0.65	0.0	0.05	13.54	0.00	2.169	4.79	0.00	5.6	94.2	0.3	-2.63	1.74	0.40	0.76	4.71	5438	354	6	0	0	0	2804	logfile
✔	8UXG	42763	2023-12-15	2023-11-09	3.08	3.56	—	2.1	0.003	0.74	0.0	0.04	15.50	0.01	2.011	10.23	1.27	2.3	97.7	0.0	1.03	0.84	0.82	2.79	1.9	0.005	0.65	0.0	0.04	15.57	0.00	2.149	9.04	0.06	2.9	97.1	0.0	1.44	0.40	0.86	0.87	3.04	138712	17324	12	0	16	0	0	logfile
✔	8UXH	42764	2023-12-12	2023-11-09	3.52	3.85	—	2.1	0.004	0.85	0.0	0.04	14.90	0.01	2.090	13.17	1.58	2.9	97.0	0.1	0.29	0.87	0.80	1.88	2.1	0.003	0.66	1.0	0.04	15.17	0.00	2.132	11.18	0.08	3.1	96.8	0.1	1.16	0.45	0.88	0.82	2.27	131656	16444	12	0	16	0	0	logfile
✔	8UXC	42759	2023-12-14	2023-11-09	2.86	3.52	—	1.8	0.003	0.67	0.0	0.04	14.10	0.01	2.139	9.47	0.03	2.5	97.4	0.1	1.09	0.87	0.84	3.07	1.8	0.005	0.70	0.0	0.04	15.03	0.00	2.109	10.03	0.26	2.9	97.0	0.0	1.31	0.35	0.88	0.88	3.31	138600	17324	12	0	12	0	0	logfile
✔	8UXi	42765	2023-12-12	2023-11-09	3.29	3.79	—	2.0	0.003	0.82	4.0	0.04	14.98	0.01	2.050	12.81	1.28	3.2	96.8	0.1	0.82	0.88	0.82	2.19	2.0	0.003	0.66	0.0	0.04	15.31	0.00	2.112	10.80	0.12	3.0	97.0	0.0	1.39	0.91	0.89	0.87	2.33	131656	16444	12	0	16	0	0	logfile
✔	8UXF	42762	2023-12-15	2023-11-09	3.13	3.54	—	1.9	0.004	0.70	0.0	0.04	14.67	0.01	2.129	10.59	0.58	2.3	97.6	0.0	0.86	0.89	0.85	3.04	1.9	0.005	0.65	0.0	0.04	15.10	0.00	2.028	9.41	0.11	2.9	97.0	0.0	1.41	0.89	0.90	0.88	3.14	138620	17324	12	0	12	0	0	logfile
✔	8UX1	42685	2023-12-11	2023-11-08	2.5	2.29	—	2.8	0.006	0.64	0.0	0.04	25.88	0.00	2.132	5.20	1.27	2.2	97.6	0.2	1.25	0.86	0.86	4.03	2.8	0.004	0.58	0.0	0.04	26.25	0.00	2.172	5.99	1.18	2.2	97.8	0.0	1.57	1.07	0.86	0.86	3.70	16395	1332	12	291	0	0	0	logfile
✔	8UUM	42590	2023-12-13	2023-11-01	3.9	4.70	4.04	4.0	0.008	1.04	0.0	0.06	14.40	0.01	2.241	5.42	0.14	5.4	94.6	0.0	-1.71	0.88	0.86	1.69	4.0	0.003	0.57	0.0	0.04	14.53	0.00	2.161	9.51	0.18	4.0	96.0	0.0	-0.25	0.97	0.88	0.85	1.45	25786	3247	10	0	30	0	0	logfile
✔	8R1G	18810	2023-12-16	2023-11-01	3.99	4.21	4.01	4.0	0.006	0.92	0.0	0.06	11.49	0.01	1.603	1.35	0.27	2.2	97.8	0.0	-0.72	0.69	0.55	0.61	4.1	0.003	0.61	0.0	0.04	15.24	0.00	1.932	10.92	0.21	4.2	95.8	0.0	0.85	1.41	0.75	0.66	0.75	33258	2050	10	0	6	0	16526	logfile
✔	8UUL	42589	2023-12-13	2023-11-01	3.2	4.04	3.32	3.7	0.009	1.04	0.0	0.07	14.63	0.01	2.247	3.74	0.04	5.0	95.0	0.0	-1.96	0.86	0.85	2.90	3.7	0.003	0.57	0.0	0.04	14.03	0.00	2.153	6.36	0.04	4.3	95.7	0.0	-0.30	0.37	0.85	0.84	2.24	25891	3254	13	0	33	0	0	logfile
✔	8R1F	18809	2023-12-11	2023-11-01	3.67	3.92	3.69	3.9	0.008	0.98	0.0	0.07	11.49	0.02	2.496	0.36	0.21	2.3	97.7	0.0	-0.70	0.58	0.53	1.69	3.9	0.003	0.57	0.0	0.04	15.01	0.00	1.865	9.02	0.32	3.0	97.0	0.0	1.20	1.66	0.70	0.68	1.27	16629	1025	5	0	3	0	8263	logfile
✔	8UUN	42591	2023-12-13	2023-11-01	3.8	4.47	3.85	3.9	0.009	1.07	0.0	0.06	14.54	0.01	2.262	4.45	0.00	4.9	95.1	0.0	-1.78	0.87	0.86	2.02	3.9	0.002	0.56	0.0	0.04	14.48	0.00	2.235	7.27	0.07	3.9	96.1	0.0	-0.42	0.97	0.87	0.85	1.59	25829	3254	11	0	29	0	0	logfile
✔	8WX2	37898	2023-12-08	2023-10-27	3.44	3.85	3.44	3.7	0.002	0.65	0.0	0.04	14.51	0.01	2.171	8.01	1.99	6.5	93.0	0.5	-2.25	0.56	0.68	0.73	3.7	0.004	0.86	0.0	0.05	16.60	0.01	2.202	14.50	0.28	7.9	92.1	0.0	0.62	0.67	0.59	0.74	0.81	6800	880	2	0	0	0	0	logfile
✔	8WX3	37899	2023-12-08	2023-10-27	2.83	2.64	2.76	2.9	0.003	0.70	0.0	0.04	12.63	0.00	2.206	5.93	0.00	3.3	96.5	0.2	0.51	0.41	0.73	2.66	2.8	0.003	0.61	0.0	0.04	15.36	0.00	2.237	7.64	2.17	3.1	96.7	0.2	1.45	1.34	0.55	0.84	2.58	7498	974	2	0	0	0	0	logfile
✔	8QZC	18774	2023-12-09	2023-10-26	3.29	3.49	3.36	3.5	0.004	0.81	0.0	0.05	13.36	0.01	2.246	3.27	0.00	4.4	95.6	0.0	-1.37	0.72	0.78	2.47	3.5	0.003	0.62	0.0	0.04	15.21	0.00	2.113	7.55	0.24	4.6	95.4	0.0	0.38	0.76	0.74	0.82	1.87	11468	1402	4	0	4	0	0	logfile
✔	8URB	42488	2023-12-12	2023-10-25	3.4	3.75	3.45	3.8	0.002	0.52	0.0	0.04	14.55	0.00	2.269	2.86	0.17	2.2	97.8	0.0	-0.61	0.73	0.82	3.32	3.8	0.003	0.52	0.0	0.04	15.26	0.00	2.158	3.83	0.17	3.6	96.4	0.0	0.29	1.13	0.72	0.82	2.41	22714	1359	7	41	2	0	11060	logfile
✔	8UQ5	42461	2023-12-13	2023-10-23	3.96	3.98	—	2.1	0.003	0.72	4.0	0.04	14.11	0.01	2.128	12.20	0.30	2.6	97.3	0.1	0.53	0.90	0.82	2.38	2.1	0.004	0.69	1.0	0.04	15.01	0.00	2.091	12.22	0.09	3.2	96.7	0.1	1.07	0.38	0.90	0.83	2.32	135336	16896	8	0	12	0	0	logfile
✔	8UQ2	42458	2023-12-14	2023-10-23	2.98	3.53	—	1.8	0.003	0.75	0.0	0.04	14.08	0.01	2.072	11.43	0.50	2.8	97.2	0.1	0.81	0.91	0.85	3.00	1.9	0.004	0.83	4.0	0.04	14.94	0.00	2.125	11.83	0.32	3.1	96.8	0.1	1.12	0.43	0.92	0.89	3.13	138608	17324	12	0	12	0	0	logfile
✔	8UQ3	42459	2023-12-15	2023-10-23	3.18	3.70	—	1.9	0.003	0.74	0.0	0.04	14.12	0.01	2.054	12.49	0.18	2.9	97.0	0.0	0.73	0.91	0.85	2.92	1.9	0.006	0.75	0.0	0.04	14.89	0.00	1.990	12.34	0.18	3.4	96.6	0.1	1.06	0.42	0.92	0.88	2.92	138700	17324	12	0	16	0	0	logfile
✔	8UMP	42381	2023-12-12	2023-10-18	2.92	3.27	3.11	3.3	0.007	0.74	0.0	0.04	19.06	0.01	2.226	7.20	0.69	0.4	99.6	0.0	1.18	0.67	0.87	4.31	3.3	0.002	0.49	0.0	0.04	18.86	0.00	2.249	8.38	1.65	1.1	98.9	0.0	3.55	1.21	0.69	0.88	3.69	21432	2724	24	0	0	0	0	logfile

• Page 1 of 480
• next →