Table showing results for December 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8U84	42008	2023-12-17	2023-09-15	3.88	4.89	3.87	2.9	0.004	0.84	0.0	0.05	16.82	0.01	2.125	14.34	0.62	5.2	94.5	0.3	-0.92	0.90	0.75	0.16	2.8	0.004	0.77	0.0	0.04	17.34	0.00	2.077	24.45	0.36	6.3	93.7	0.1	-0.72	1.21	0.90	0.77	0.08	37885	4770	20	0	0	0	0	logfile
✔	8QKK	18464	2023-12-07	2023-09-15	3.23	3.44	3.28	3.6	0.002	0.49	0.0	0.04	14.14	0.00	2.132	9.00	0.00	2.9	97.1	0.0	2.28	0.62	0.79	1.22	3.6	0.004	0.66	0.0	0.04	15.84	0.00	2.254	10.33	0.00	2.3	97.7	0.0	1.79	0.79	0.65	0.81	1.05	5581	730	1	0	0	0	0	logfile
✔	8QK3	18455	2023-12-08	2023-09-14	3.2	4.00	3.10	3.4	0.003	0.60	0.0	0.04	12.49	0.00	1.913	6.28	0.12	3.1	96.9	0.0	-0.49	0.87	0.81	3.51	3.4	0.004	0.75	0.0	0.04	14.54	0.00	2.010	14.86	0.12	4.1	95.9	0.0	-0.50	0.95	0.87	0.86	2.97	7535	955	5	0	0	0	0	logfile
✔	8WD6	37455	2023-12-08	2023-09-14	2.87	3.11	2.89	3.2	0.003	0.56	1.0	0.04	16.49	0.00	2.431	5.56	0.12	2.7	97.3	0.0	1.60	0.57	0.77	1.54	3.2	0.004	0.61	0.0	0.04	17.64	0.00	2.122	6.80	3.82	3.5	96.5	0.0	1.43	1.21	0.57	0.78	1.44	7973	1025	2	0	0	0	0	logfile
✔	8QJY	18454	2023-12-08	2023-09-14	3.5	4.18	3.43	3.7	0.003	0.61	0.0	0.05	13.67	0.00	1.682	8.80	0.14	2.7	97.3	0.0	-0.59	0.85	0.80	3.37	3.9	0.003	0.71	0.0	0.04	15.53	0.00	2.131	14.04	0.56	2.8	97.2	0.0	-0.11	1.62	0.86	0.83	2.71	6287	798	4	0	0	0	0	logfile
✔	8QJX	18453	2023-12-08	2023-09-14	3.3	3.68	3.02	3.3	0.005	0.59	0.0	0.05	13.62	0.00	1.871	5.41	0.00	3.7	96.3	0.0	-0.83	0.88	0.87	4.13	3.3	0.006	0.64	0.0	0.05	15.01	0.00	2.028	10.06	0.22	4.5	95.5	0.0	-0.49	0.79	0.88	0.88	3.43	7868	997	5	0	0	0	0	logfile
✔	8U5Y	41939	2023-12-16	2023-09-13	3.01	3.34	—	3.2	0.003	0.57	0.0	0.04	14.42	0.00	2.027	5.30	0.57	4.0	96.0	0.0	-1.43	0.86	0.83	3.28	3.2	0.003	0.54	0.0	0.04	14.82	0.00	1.981	6.64	0.05	5.0	95.0	0.0	-1.18	0.50	0.86	0.83	3.42	34491	2089	4	16	0	0	17152	logfile
✔	8QJJ	18448	2023-12-08	2023-09-13	3.35	3.35	3.18	3.3	0.012	1.98	0.0	0.10	12.60	0.01	2.538	0.43	0.00	2.3	97.7	0.0	-2.06	0.33	0.77	5.23	3.4	0.002	0.57	0.0	0.05	16.11	0.00	2.152	5.98	0.25	2.7	97.3	0.0	-1.79	2.44	0.33	0.78	3.82	7032	450	6	0	0	0	3588	logfile
✔	8U66	41946	2023-12-14	2023-09-13	2.21	2.31	2.31	2.3	0.004	0.56	0.0	0.09	16.75	0.00	1.869	2.66	0.28	3.4	96.6	0.0	2.01	0.71	0.83	4.97	2.3	0.002	0.54	0.0	0.04	17.19	0.00	1.882	6.08	1.77	3.2	96.8	0.0	1.38	0.27	0.77	0.87	4.96	29365	3584	24	0	16	981	0	logfile
✔	8U4V	41899	2023-12-08	2023-09-11	2.99	3.26	2.62	3.1	0.006	1.12	2.0	0.06	16.56	0.00	2.063	13.44	0.83	3.4	96.6	0.0	0.66	0.71	0.79	3.57	3.1	0.003	0.90	0.0	0.04	16.09	0.00	2.188	7.82	1.80	2.6	97.4	0.0	1.37	1.59	0.83	0.90	3.46	6637	862	8	0	1	3	0	logfile
✔	8Qi7	18436	2023-12-10	2023-09-11	2.9	3.13	2.98	3.2	0.004	0.65	0.0	0.04	9.14	0.00	2.275	2.18	0.79	6.3	93.4	0.2	-3.83	0.69	0.88	5.75	3.2	0.002	0.58	0.0	0.04	13.60	0.00	2.249	2.39	0.59	2.8	97.2	0.0	0.70	0.38	0.70	0.88	3.93	14609	1848	8	0	0	117	0	logfile
✔	8WBX	37426	2023-12-08	2023-09-10	3.23	3.53	3.23	3.5	0.003	0.66	0.0	0.04	16.96	0.00	2.305	10.08	0.38	1.6	98.4	0.0	1.77	0.48	0.63	1.04	3.5	0.003	0.66	0.0	0.04	16.18	0.00	2.219	11.09	0.76	2.6	97.4	0.0	1.55	0.60	0.49	0.66	1.09	7331	934	3	0	1	0	0	logfile
✔	8WBA	37418	2023-12-08	2023-09-09	3.1	3.27	3.07	3.3	0.002	0.54	0.0	0.04	16.65	0.00	2.289	9.38	0.32	1.6	98.4	0.0	1.56	0.62	0.79	2.30	3.3	0.004	0.59	0.0	0.04	16.81	0.00	2.180	10.12	0.53	2.2	97.8	0.0	1.61	0.31	0.61	0.80	2.21	8646	1106	3	0	2	0	0	logfile
✔	8QHP	18415	2023-12-08	2023-09-08	2.8	3.49	2.82	3.3	0.002	0.38	0.0	0.04	11.64	0.00	2.176	6.09	0.00	1.0	99.0	0.0	1.77	0.76	0.86	4.14	3.3	0.003	0.52	0.0	0.04	14.64	0.00	2.158	6.98	0.98	1.2	98.8	0.0	2.46	0.86	0.74	0.85	3.32	6788	820	4	0	2	0	0	logfile
✔	8WAM	37397	2023-12-08	2023-09-07	3.23	3.48	3.24	3.5	0.002	0.45	0.0	0.04	17.90	0.00	2.211	5.64	0.11	1.7	98.3	0.0	1.70	0.60	0.77	1.11	3.5	0.003	0.58	0.0	0.04	17.54	0.00	1.982	6.16	0.32	3.1	96.9	0.0	1.06	0.41	0.59	0.78	1.56	8650	1102	4	0	4	0	0	logfile
✔	8WA5	37391	2023-12-12	2023-09-07	2.51	2.71	2.50	2.7	0.004	1.10	0.0	0.04	16.21	0.01	1.926	4.94	0.85	2.3	97.7	0.0	1.17	0.66	0.84	3.96	2.8	0.003	0.78	0.0	0.04	16.63	0.00	2.028	5.49	1.98	2.3	97.7	0.0	1.07	1.22	0.69	0.88	4.09	9929	1249	5	0	12	6	0	logfile
✔	8QHC	18407	2023-12-10	2023-09-07	3.1	3.05	2.90	2.9	0.006	0.65	0.0	0.04	19.46	0.02	1.929	10.07	0.00	3.2	96.7	0.1	1.43	0.82	0.85	2.76	2.9	0.003	0.73	0.0	0.04	19.39	0.01	1.927	9.34	0.36	3.2	96.8	0.0	1.49	0.87	0.83	0.86	2.90	14829	1764	5	61	2	0	0	logfile
✔	8U2C	41845	2023-12-10	2023-09-05	2.5	2.75	2.49	2.9	0.012	1.88	5.0	0.10	13.83	0.02	2.543	0.27	1.85	4.1	95.6	0.3	-1.26	0.75	0.80	3.98	2.9	0.003	0.74	0.0	0.04	16.42	0.00	2.193	8.51	2.99	3.8	96.1	0.1	0.61	0.71	0.75	0.83	2.58	15042	1948	10	0	0	0	0	logfile
✔	8QFS	18383	2023-12-10	2023-09-04	2.7	2.85	2.64	2.7	0.006	0.65	0.0	0.04	19.93	0.02	1.966	7.90	4.62	3.1	96.8	0.1	1.82	0.85	0.89	3.35	2.7	0.003	0.70	0.0	0.04	19.91	0.01	1.855	7.27	4.46	3.2	96.6	0.1	2.04	0.23	0.85	0.90	3.31	13294	1576	4	61	2	0	0	logfile
✔	8U1o	41819	2023-12-10	2023-09-01	3.4	2.61	3.67	3.4	0.005	1.00	0.0	0.06	16.71	0.01	2.225	12.44	0.92	7.7	92.0	0.4	-2.51	0.56	0.72	1.67	3.4	0.003	0.84	0.0	0.05	17.02	0.00	2.124	23.77	0.74	7.9	91.8	0.3	-2.50	0.49	0.57	0.74	1.58	15096	1989	3	0	0	0	0	logfile

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