Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9C4E	45183	2024-12-31	2024-06-04	2.73	3.23	2.73	3.1	0.003	0.53	0.0	0.04	16.12	0.00	2.218	6.74	0.82	2.0	98.0	0.0	0.56	0.61	0.76	3.24	3.1	0.004	0.56	0.0	0.04	16.39	0.00	2.482	5.75	1.33	2.1	97.9	0.0	0.46	1.06	0.68	0.83	3.57	14760	1932	4	0	0	0	0	logfile
✔	8ZQo	60386	2024-12-27	2024-06-03	2.8	2.96	2.77	3.0	0.004	0.76	0.0	0.05	17.77	0.01	2.155	4.33	1.20	1.8	98.2	0.0	1.88	0.66	0.88	2.87	3.0	0.003	0.55	0.0	0.04	15.38	0.00	2.194	2.22	0.96	1.8	98.2	0.0	2.45	0.88	0.62	0.87	2.60	4032	515	3	0	7	1	0	logfile
✔	8ZQQ	60388	2024-12-27	2024-06-03	2.5	2.79	2.52	2.8	0.003	0.65	0.0	0.04	16.30	0.00	2.211	2.21	0.25	2.5	97.5	0.0	1.76	0.64	0.87	3.26	2.8	0.003	0.60	0.0	0.04	14.72	0.00	2.196	2.21	1.76	2.1	97.9	0.0	2.02	0.87	0.63	0.87	2.75	3836	492	3	0	6	0	0	logfile
✔	8ZQR	60389	2024-12-27	2024-06-03	3.6	3.82	3.65	3.9	0.005	0.92	2.0	0.06	18.43	0.01	2.229	8.96	0.76	5.8	94.2	0.0	-0.86	0.60	0.80	1.77	3.9	0.003	0.69	0.0	0.04	16.91	0.00	2.577	5.67	2.80	4.0	96.0	0.0	1.06	1.01	0.54	0.80	0.84	3778	486	2	0	3	0	0	logfile
✔	9C45	45175	2024-12-27	2024-06-03	3.2	3.43	3.23	3.5	0.011	1.26	0.0	0.08	11.88	0.01	2.507	0.81	0.00	2.5	97.5	0.0	1.45	0.70	0.85	5.90	3.4	0.004	0.60	0.0	0.05	12.14	0.00	2.484	2.15	1.40	1.7	98.3	0.0	0.62	0.96	0.68	0.90	5.68	3900	496	6	0	9	0	0	logfile
✔	9C4B	45180	2024-12-27	2024-06-03	3.4	3.78	3.57	3.7	0.004	0.73	1.0	0.05	16.50	0.00	1.827	10.64	0.89	5.9	93.3	0.8	-0.46	0.62	0.72	1.52	3.7	0.003	0.55	0.0	0.04	16.89	0.00	2.314	7.04	2.07	7.0	92.8	0.3	-0.53	0.54	0.62	0.72	1.61	6110	393	1	0	0	0	3030	logfile
✔	8ZQE	60384	2024-12-28	2024-06-02	2.9	2.31	3.03	2.1	0.004	0.71	0.0	0.05	13.70	0.00	2.169	12.51	0.21	4.5	95.5	0.0	-0.15	0.74	0.75	2.45	2.2	0.003	0.69	0.0	0.04	17.17	0.00	2.407	10.84	2.64	3.9	96.1	0.0	0.08	1.34	0.77	0.80	2.25	8767	1131	6	0	0	0	0	logfile
✔	9FJo	50507	2024-12-29	2024-05-31	3.05	3.39	3.10	3.4	0.002	0.52	0.0	0.04	15.85	0.00	2.165	5.36	0.24	2.1	97.9	0.0	-0.37	0.68	0.84	2.73	3.4	0.003	0.59	0.0	0.04	16.66	0.00	2.444	5.62	2.37	2.9	97.1	0.0	0.50	0.29	0.68	0.84	2.35	11466	1452	8	0	8	0	0	logfile
✔	8ZPV	60355	2024-12-30	2024-05-31	2.9	3.96	3.05	3.6	0.007	0.83	4.0	0.05	17.50	0.00	2.026	14.13	10.22	8.2	91.7	0.1	-2.61	0.81	0.73	0.57	3.6	0.004	0.91	0.0	0.05	17.58	0.00	2.276	11.37	2.93	6.8	93.1	0.1	0.20	1.78	0.86	0.85	1.62	12440	1552	6	0	2	0	0	logfile
✔	9FJM	50506	2024-12-30	2024-05-31	3.65	3.91	3.68	3.9	0.002	0.57	0.0	0.04	16.75	0.00	1.766	8.19	0.24	1.5	98.5	0.0	-0.30	0.74	0.82	2.24	3.9	0.005	0.70	0.0	0.05	17.27	0.00	1.975	8.53	4.11	3.1	96.9	0.0	0.01	0.95	0.75	0.83	2.02	11772	1487	16	0	16	0	0	logfile
✔	8ZPT	60354	2024-12-28	2024-05-31	2.96	2.53	2.83	3.0	0.002	0.45	0.0	0.04	10.05	0.00	1.974	6.41	0.20	2.2	97.8	0.0	1.57	0.57	0.73	2.45	2.9	0.004	0.67	0.0	0.04	15.43	0.00	2.516	6.36	3.13	3.6	96.4	0.0	0.60	1.79	0.60	0.79	2.77	9151	1162	7	0	1	0	0	logfile
✔	9C3F	45167	2024-12-27	2024-05-31	3.78	4.13	3.80	4.2	0.009	1.27	2.0	0.06	21.43	0.03	2.277	7.47	4.47	3.1	96.9	0.0	1.59	0.53	0.74	0.56	4.2	0.002	0.57	0.0	0.04	18.79	0.00	2.599	5.54	4.74	2.9	97.1	0.0	2.16	0.36	0.52	0.73	0.79	3800	485	2	0	2	0	0	logfile
✔	9FJU	50516	2024-12-31	2024-05-31	3.84	4.15	3.89	4.0	0.004	0.61	0.0	0.04	18.81	0.00	1.705	9.90	0.18	2.1	97.9	0.0	0.15	0.82	0.83	1.83	4.0	0.003	0.70	0.0	0.05	17.26	0.00	1.915	9.08	3.23	3.0	97.0	0.0	-0.03	0.43	0.83	0.83	1.61	15968	2010	22	0	24	0	0	logfile
✔	9FJY	50517	2024-12-31	2024-05-31	3.79	4.12	3.87	4.0	0.004	0.60	0.0	0.04	18.47	0.00	1.723	9.49	0.41	1.7	98.3	0.0	0.26	0.82	0.83	2.23	4.0	0.005	0.72	0.0	0.05	16.91	0.00	1.912	10.63	4.64	2.8	97.2	0.0	0.07	0.97	0.83	0.84	1.71	15968	2010	22	0	24	0	0	logfile
✔	8ZPS	60353	2024-12-28	2024-05-31	2.97	2.45	2.77	3.0	0.002	0.54	0.0	0.04	9.77	0.00	1.744	8.01	1.06	2.4	97.6	0.0	1.49	0.49	0.65	1.55	2.9	0.003	0.63	0.0	0.04	14.75	0.00	2.341	7.56	2.45	3.2	96.8	0.0	1.12	1.40	0.62	0.79	2.44	8848	1135	7	0	1	0	0	logfile
✔	9C3E	45166	2024-12-29	2024-05-31	3.5	4.21	3.49	3.9	0.005	0.89	0.0	0.05	15.76	0.01	2.140	16.01	1.92	4.2	95.7	0.2	-0.18	0.74	0.79	2.36	3.9	0.006	0.78	0.0	0.05	16.18	0.00	2.461	12.01	5.12	5.2	94.8	0.1	0.13	0.55	0.75	0.81	2.11	10619	1356	15	0	13	0	0	logfile
✔	9C21	45135	2024-12-31	2024-05-30	3.4	4.07	3.71	4.0	0.005	0.71	6.0	0.05	15.19	0.01	2.183	12.52	1.42	4.3	95.7	0.0	0.80	0.73	0.83	1.64	3.9	0.002	0.58	0.0	0.04	15.17	0.01	2.532	8.79	3.43	2.8	97.2	0.0	1.32	1.47	0.67	0.79	1.66	16704	2226	6	0	0	0	0	logfile
✔	8ZPP	60351	2024-12-27	2024-05-30	3.6	3.76	3.28	3.7	0.008	0.75	0.0	0.05	12.66	0.00	2.241	12.88	0.00	4.1	95.9	0.0	-0.26	0.64	0.77	2.55	3.7	0.004	0.71	0.0	0.05	16.43	0.00	2.484	12.25	2.56	4.4	95.6	0.0	-0.57	1.19	0.66	0.78	1.86	3266	419	3	0	0	0	0	logfile
✔	9C2B	45153	2024-12-28	2024-05-30	2.42	2.65	2.43	2.7	0.007	0.98	0.0	0.06	18.26	0.01	2.161	3.71	0.00	2.1	97.9	0.0	0.27	0.67	0.85	4.42	2.7	0.003	0.55	0.0	0.04	16.77	0.00	1.939	2.89	2.42	1.2	98.8	0.0	1.41	0.34	0.69	0.87	3.66	8208	990	15	0	24	141	0	logfile
✔	9C2A	45152	2024-12-28	2024-05-30	2.74	2.08	2.74	1.9	0.008	0.94	0.0	0.06	12.74	0.01	2.025	6.15	0.00	2.6	97.4	0.0	-1.18	0.75	0.77	4.66	1.9	0.004	0.52	0.0	0.04	14.38	0.00	2.509	4.33	2.78	2.5	97.5	0.0	0.59	0.42	0.78	0.81	4.12	7833	933	12	0	21	102	0	logfile

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