Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9F2A	50143	2024-12-30	2024-04-22	2.91	2.22	—	2.0	0.004	0.55	0.0	0.04	12.98	0.01	2.218	3.12	0.00	2.7	97.3	0.0	0.23	0.82	0.82	3.64	2.0	0.003	0.58	0.0	0.05	16.34	0.01	2.149	3.56	1.03	2.8	97.2	0.0	0.46	0.38	0.82	0.82	3.11	13557	1692	5	0	4	0	0	logfile
✔	8Z90	39852	2024-12-30	2024-04-22	2.87	3.20	2.88	3.1	0.003	0.67	0.0	0.04	14.44	0.01	2.113	10.76	0.00	3.8	96.2	0.0	-0.73	0.81	0.88	3.65	3.1	0.003	0.65	0.0	0.04	16.79	0.00	2.499	9.14	1.13	3.9	96.1	0.0	0.26	1.01	0.80	0.89	3.31	13481	1575	6	35	1	0	0	logfile
✔	9F29	50140	2024-12-30	2024-04-22	2.94	2.21	—	2.0	0.003	0.49	0.0	0.04	13.45	0.00	2.256	3.38	0.00	3.7	96.3	0.0	-0.15	0.81	0.82	3.62	2.0	0.003	0.51	0.0	0.04	16.28	0.00	2.387	3.79	1.58	3.2	96.8	0.0	0.37	1.04	0.82	0.82	2.77	13520	1688	5	0	4	0	0	logfile
✔	9BHW	44555	2024-12-28	2024-04-22	2.72	3.56	2.84	3.3	0.005	0.72	0.0	0.05	14.14	0.00	2.158	6.79	0.31	2.0	98.0	0.0	0.77	0.85	0.86	4.93	3.3	0.004	0.62	0.0	0.04	15.95	0.00	2.467	4.73	1.13	2.1	97.9	0.0	2.06	0.68	0.79	0.85	3.99	8759	1071	8	4	0	0	0	logfile
✔	8Z8X	39850	2024-12-31	2024-04-22	3.06	3.36	3.12	3.3	0.003	0.61	0.0	0.04	14.96	0.01	2.148	12.31	0.00	4.9	95.1	0.0	-0.67	0.80	0.87	2.83	3.3	0.003	0.62	0.0	0.04	16.40	0.00	2.470	8.61	1.41	4.8	95.2	0.0	-0.03	1.34	0.81	0.90	2.80	14768	1730	6	35	1	0	0	logfile
✔	8Z85	39838	2024-12-29	2024-04-21	2.3	2.74	2.30	2.6	0.002	0.48	0.0	0.04	13.26	0.00	2.234	7.19	0.00	2.4	97.6	0.0	0.02	0.79	0.86	4.75	2.6	0.002	0.53	0.0	0.04	15.44	0.00	2.467	6.08	1.07	2.2	97.8	0.0	0.96	1.10	0.79	0.87	4.18	10467	1256	5	18	0	0	0	logfile
✔	8Z7N	39820	2024-12-31	2024-04-20	3.58	3.87	3.60	3.6	0.010	1.35	0.0	0.07	22.40	0.01	1.848	53.22	29.65	22.6	76.7	0.7	-5.94	0.61	0.50	0.67	3.6	0.004	0.96	0.0	0.05	18.54	0.01	2.452	20.66	4.49	14.0	86.0	0.0	-3.47	1.86	0.62	0.52	0.60	16641	2094	15	0	18	0	0	logfile
✔	9BH9	44537	2024-12-30	2024-04-19	3.5	3.53	3.42	3.5	0.003	0.68	0.0	0.05	15.03	0.01	2.362	1.75	0.07	0.6	99.4	0.0	-2.11	0.72	0.76	2.80	3.5	0.003	0.66	0.0	0.04	17.76	0.00	2.524	6.81	1.47	1.9	98.1	0.0	0.87	2.06	0.74	0.76	1.60	13155	1574	4	50	0	0	0	logfile
✔	9BH8	44536	2024-12-30	2024-04-19	3.6	3.61	3.50	3.5	0.003	0.64	0.0	0.04	15.49	0.01	2.310	1.53	0.15	0.7	99.3	0.0	-2.28	0.74	0.75	2.34	3.5	0.003	0.69	0.0	0.04	17.65	0.00	2.439	7.50	1.84	1.9	98.1	0.0	0.55	1.22	0.76	0.76	1.40	13051	1574	4	44	0	0	0	logfile
✔	9BH7	44535	2024-12-30	2024-04-19	3.5	3.43	3.54	3.6	0.003	0.64	0.0	0.04	12.66	0.01	2.370	1.58	0.00	0.7	99.2	0.1	-1.16	0.83	0.78	2.21	3.6	0.003	0.60	0.0	0.04	16.09	0.00	2.534	6.56	2.32	2.0	98.0	0.0	1.96	2.04	0.83	0.79	1.12	12166	1544	2	0	0	0	0	logfile
✔	9BHA	44538	2024-12-30	2024-04-19	3.5	3.62	3.42	3.6	0.003	0.65	0.0	0.04	15.47	0.01	2.343	1.70	0.00	0.5	99.4	0.1	-1.83	0.72	0.77	2.78	3.6	0.003	0.63	0.0	0.04	17.85	0.00	2.498	6.57	1.54	1.6	98.4	0.0	1.05	0.81	0.73	0.78	1.90	13264	1586	4	49	0	0	0	logfile
✔	9BGV	44524	2024-12-30	2024-04-19	3.65	2.55	3.64	2.1	0.005	0.69	0.0	0.05	14.63	0.00	1.891	11.07	0.07	6.5	93.5	0.0	-0.54	0.71	0.67	1.15	2.1	0.005	0.80	0.0	0.05	16.84	0.00	2.255	11.39	3.23	5.5	94.5	0.0	-0.67	0.52	0.71	0.68	0.88	12588	1574	4	0	2	0	0	logfile
✔	9BFi	44497	2024-12-27	2024-04-17	2.66	2.90	2.78	2.9	0.003	0.68	0.0	0.04	12.28	0.01	2.274	2.64	0.00	1.5	98.5	0.0	0.42	0.55	0.80	3.23	2.9	0.003	0.54	0.0	0.04	14.65	0.00	2.617	4.36	1.01	2.1	97.7	0.2	2.04	0.33	0.52	0.80	2.88	3766	489	1	0	0	0	0	logfile
✔	9BFJ	44498	2024-12-27	2024-04-17	2.35	2.59	2.47	2.6	0.005	0.65	0.0	0.04	15.09	0.01	2.196	3.24	0.00	1.0	99.0	0.0	0.78	0.61	0.86	4.12	2.6	0.003	0.51	0.0	0.04	15.40	0.00	2.240	5.71	1.25	1.6	98.4	0.0	1.98	0.25	0.60	0.87	3.39	3833	496	2	0	3	0	0	logfile
✔	9F0L	50113	2024-12-27	2024-04-17	2.76	3.53	2.77	3.3	0.002	0.43	0.0	0.03	18.24	0.00	2.271	7.78	0.84	0.4	99.6	0.0	3.17	0.87	0.84	2.02	3.3	0.003	0.48	0.0	0.04	18.20	0.00	2.527	5.75	2.18	0.9	99.1	0.0	4.17	0.33	0.83	0.82	1.75	6119	791	1	0	0	0	0	logfile
✔	9BEi	44479	2024-12-27	2024-04-15	4.16	4.77	4.14	4.2	0.003	0.78	0.0	0.05	14.43	0.01	2.016	21.15	0.00	9.2	90.7	0.1	-1.93	0.85	0.73	—	4.2	0.004	0.77	0.0	0.05	14.62	0.01	2.461	21.84	0.00	9.3	90.6	0.1	-1.64	0.52	0.85	0.74	—	6649	862	5	0	0	0	0	logfile
✔	9BEE	44477	2024-12-27	2024-04-15	3.4	3.98	3.21	3.9	0.013	1.84	1.0	0.10	11.72	0.02	2.467	4.56	0.00	11.9	88.1	0.0	-2.32	0.47	0.59	1.69	3.9	0.002	0.58	0.0	0.05	15.70	0.00	2.275	5.87	3.45	5.4	94.6	0.0	-0.63	1.54	0.50	0.68	2.02	3046	189	2	0	7	0	1501	logfile
✔	8Z27	39743	2024-12-30	2024-04-12	2.86	3.87	2.96	3.2	0.007	1.41	9.0	0.11	24.39	0.02	2.290	7.15	32.69	1.4	98.2	0.4	3.16	0.64	0.48	0.87	3.2	0.004	0.82	0.0	0.05	18.30	0.01	2.499	15.95	3.95	4.6	95.3	0.1	-0.01	1.35	0.78	0.75	0.73	8596	1047	8	0	14	0	0	logfile
✔	9BD8	44446	2024-12-27	2024-04-11	4.8	6.12	4.09	5.1	0.003	0.63	0.0	0.04	13.22	0.00	2.141	25.69	0.00	7.9	92.1	0.0	-2.18	0.86	0.81	—	5.1	0.003	0.63	0.0	0.04	13.11	0.00	2.534	19.03	0.00	7.8	92.2	0.0	-2.44	0.30	0.86	0.82	—	5369	726	3	0	1	0	0	logfile
✔	9BDD	44449	2024-12-30	2024-04-11	2.86	2.19	2.86	2.2	0.004	0.70	0.0	0.06	17.26	0.01	2.249	5.54	0.26	1.8	98.2	0.0	0.22	0.61	0.60	3.11	2.0	0.003	0.58	0.0	0.04	19.01	0.00	2.457	6.04	2.81	2.0	98.0	0.0	1.47	1.02	0.78	0.79	2.58	12313	1397	7	61	1	0	0	logfile

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