Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BDD	44449	2024-12-30	2024-04-11	2.86	2.19	2.86	2.2	0.004	0.70	0.0	0.06	17.26	0.01	2.249	5.54	0.26	1.8	98.2	0.0	0.22	0.61	0.60	3.11	2.0	0.003	0.58	0.0	0.04	19.01	0.00	2.457	6.04	2.81	2.0	98.0	0.0	1.47	1.02	0.78	0.79	2.58	12313	1397	7	61	1	0	0	logfile
✔	8Z1F	39726	2024-12-30	2024-04-11	4.3	4.91	4.67	4.5	0.002	0.52	0.0	0.04	18.29	0.00	1.966	6.76	0.00	5.3	94.1	0.6	0.23	0.74	0.55	—	4.5	0.002	0.62	0.0	0.05	19.18	0.00	1.795	9.23	0.00	9.0	90.4	0.6	-1.55	1.37	0.77	0.63	—	12569	668	3	66	3	0	5934	logfile
✔	9BDC	44448	2024-12-30	2024-04-11	2.54	2.10	2.55	2.0	0.003	0.67	0.0	0.05	17.86	0.01	2.280	4.90	0.18	2.5	97.5	0.0	0.28	0.59	0.52	3.09	2.0	0.002	0.54	0.0	0.04	19.29	0.00	2.523	6.19	0.72	2.6	97.4	0.0	1.42	0.50	0.79	0.80	2.63	12026	1392	6	61	0	0	0	logfile
✔	8Z0T	39033	2024-12-27	2024-04-10	3.58	3.81	3.61	3.8	0.005	0.98	1.0	0.06	19.03	0.01	2.259	6.37	0.98	6.4	93.6	0.0	-1.26	0.72	0.79	1.79	3.7	0.003	0.65	0.0	0.05	16.79	0.00	2.447	8.62	5.45	7.2	92.8	0.0	-0.52	0.32	0.72	0.79	1.82	6556	802	9	0	17	0	0	logfile
✔	8Z0P	39710	2024-12-28	2024-04-10	3.1	3.23	3.22	3.3	0.003	0.68	0.0	0.04	15.66	0.00	1.926	7.25	1.17	7.5	91.8	0.7	-1.15	0.58	0.73	2.06	3.2	0.003	0.64	0.0	0.04	16.35	0.00	1.967	5.30	2.34	8.6	90.6	0.9	-1.36	1.05	0.59	0.76	1.79	9246	586	2	0	3	0	4627	logfile
✔	8Z0o	39709	2024-12-30	2024-04-10	3.2	3.80	3.28	3.7	0.015	0.81	0.0	0.04	14.91	0.01	2.152	12.49	2.30	5.1	94.8	0.1	1.29	0.51	0.74	2.01	3.7	0.003	0.56	0.0	0.04	15.62	0.00	2.144	8.40	2.76	5.7	94.3	0.0	1.66	1.38	0.57	0.80	2.08	12296	1522	6	2	2	0	0	logfile
✔	9EYi	50054	2024-12-29	2024-04-09	2.75	3.13	2.83	3.0	0.005	0.63	0.0	0.04	15.67	0.00	2.211	10.26	2.15	3.3	96.7	0.0	0.12	0.82	0.81	3.48	3.0	0.003	0.58	0.0	0.04	15.57	0.00	2.455	9.65	1.31	3.4	96.6	0.0	0.48	0.31	0.82	0.81	3.29	9453	1248	5	8	0	0	0	logfile
✔	9BCV	44440	2024-12-28	2024-04-09	3.2	3.43	3.23	3.4	0.003	0.86	0.0	0.04	15.57	0.00	1.994	2.45	0.64	1.9	98.1	0.0	-0.32	0.64	0.79	2.82	3.4	0.002	0.55	0.0	0.03	14.74	0.00	2.014	1.94	4.82	1.7	98.3	0.0	-0.01	0.26	0.65	0.78	3.09	7729	422	12	0	907	0	0	logfile
✔	9BCo	44432	2024-12-27	2024-04-09	4.4	4.70	4.38	4.6	0.005	0.88	1.0	0.05	12.78	0.01	2.105	8.36	0.00	7.3	92.7	0.0	-1.99	0.75	0.73	—	4.6	0.003	0.63	0.0	0.04	11.48	0.00	2.387	2.85	0.00	4.4	95.6	0.0	0.34	0.71	0.76	0.75	—	6164	1038	4	0	2	0	0	logfile
✔	9EY1	50051	2024-12-31	2024-04-09	2.9	2.07	—	2.1	0.004	0.81	0.0	0.05	18.77	0.00	2.066	8.35	1.66	3.3	96.7	0.1	0.31	0.70	0.70	2.33	2.0	0.004	0.71	0.0	0.04	19.12	0.01	2.005	9.29	3.13	3.8	96.2	0.0	0.13	0.57	0.76	0.74	2.55	16769	2010	10	69	2	0	0	logfile
✔	9BCN	44431	2024-12-27	2024-04-09	2.9	3.16	2.99	3.2	0.006	0.81	2.0	0.06	15.34	0.01	2.156	3.80	0.96	3.7	96.3	0.0	-0.99	0.72	0.85	4.67	3.2	0.004	0.71	0.0	0.05	15.89	0.00	2.489	2.95	1.61	2.8	97.2	0.0	0.57	1.13	0.69	0.85	3.67	6606	850	8	0	16	0	0	logfile
✔	9BCQ	44434	2024-12-30	2024-04-09	3.1	3.30	3.12	3.3	0.006	0.71	1.0	0.07	14.49	0.01	2.199	3.67	0.00	3.7	96.3	0.0	-1.15	0.73	0.85	4.38	3.3	0.003	0.58	0.0	0.06	14.61	0.00	2.418	3.23	0.72	3.2	96.8	0.0	-0.23	0.31	0.70	0.84	3.76	13401	874	9	0	12	0	6466	logfile
✔	9EYJ	50055	2024-12-27	2024-04-09	2.97	3.34	2.92	3.2	0.004	0.59	1.0	0.04	16.13	0.00	1.569	13.32	2.14	4.8	95.2	0.0	-0.70	0.70	0.72	2.62	3.2	0.003	0.58	0.0	0.04	16.45	0.00	2.604	10.38	3.48	4.8	95.2	0.0	-0.56	0.40	0.70	0.72	2.83	4334	576	3	4	0	0	0	logfile
✔	9BCP	44433	2024-12-27	2024-04-09	4.1	4.20	4.12	4.2	0.006	1.10	1.0	0.05	15.68	0.01	2.251	7.55	0.35	8.7	91.3	0.0	-2.81	0.70	0.75	—	4.2	0.003	0.67	0.0	0.04	14.39	0.00	2.497	4.86	0.00	9.3	90.7	0.0	-0.83	0.55	0.70	0.76	—	4162	618	5	0	2	1	0	logfile
✔	9EY0	50050	2024-12-31	2024-04-09	2.78	2.62	—	3.0	0.005	0.56	1.0	0.04	17.62	0.00	1.995	4.46	0.18	2.7	97.3	0.0	1.57	0.91	0.89	3.36	3.0	0.004	0.65	0.0	0.04	18.20	0.00	1.967	6.80	1.84	2.5	97.5	0.0	1.11	0.41	0.90	0.89	3.07	16691	2008	10	65	4	0	0	logfile
✔	9BCL	44429	2024-12-27	2024-04-09	2.9	3.20	3.03	3.2	0.005	0.76	1.0	0.07	14.78	0.00	2.149	3.19	0.31	3.3	96.7	0.0	-1.41	0.67	0.82	4.31	3.2	0.003	0.63	0.0	0.04	14.95	0.00	2.531	4.25	1.08	2.5	97.5	0.0	0.54	0.38	0.69	0.85	3.62	6719	850	8	0	18	0	0	logfile
✔	9BCS	44436	2024-12-27	2024-04-09	4.4	4.63	4.45	4.5	0.002	0.57	0.0	0.04	12.17	0.00	2.221	2.87	0.57	5.3	94.7	0.0	-0.54	0.60	0.78	—	4.5	0.004	0.70	0.0	0.04	10.57	0.01	2.211	3.30	0.00	9.9	90.1	0.0	-0.21	0.53	0.62	0.80	—	5916	1038	4	0	2	0	0	logfile
✔	9BC7	44426	2024-12-31	2024-04-08	3.3	2.73	3.21	3.4	0.015	1.83	0.0	0.10	14.65	0.01	2.210	3.53	0.55	2.2	97.8	0.0	-1.65	0.52	0.66	4.43	3.4	0.003	0.60	0.0	0.04	16.74	0.00	2.514	5.35	1.45	3.6	96.4	0.0	1.88	0.66	0.63	0.77	2.94	15628	2024	8	0	16	0	0	logfile
✔	9EXS	50048	2024-12-31	2024-04-08	3.28	4.23	3.43	3.9	0.012	1.63	0.0	0.09	12.22	0.02	1.879	0.00	0.37	2.1	97.9	0.0	0.19	0.83	0.76	3.45	3.9	0.002	0.55	0.0	0.04	13.48	0.00	2.099	2.93	0.37	1.6	98.4	0.0	2.32	0.75	0.82	0.79	2.77	15691	1004	3	0	1	0	7675	logfile
✔	8YZK	39696	2024-12-27	2024-04-07	3.4	2.39	3.43	1.7	0.003	0.76	0.0	0.04	18.28	0.01	2.181	13.45	1.07	8.9	91.1	0.0	-1.21	0.68	0.59	0.53	1.7	0.003	0.72	0.0	0.04	18.37	0.00	2.465	14.16	5.36	7.6	92.3	0.1	-0.85	0.34	0.69	0.62	0.30	6470	866	4	0	0	0	0	logfile

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