Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HND	34911	2024-12-27	2022-12-07	3.19	3.62	3.32	3.6	0.008	1.22	4.0	0.07	14.37	0.02	2.231	14.77	0.65	4.5	95.5	0.0	-2.74	0.50	0.73	2.07	3.6	0.003	0.60	0.0	0.04	15.32	0.00	2.568	7.56	3.45	2.9	97.1	0.0	1.39	1.93	0.41	0.66	2.27	4370	560	3	0	4	0	0	logfile
✔	8FEH	29027	2024-12-27	2022-12-06	3.28	4.31	3.36	3.4	0.008	1.02	0.0	0.07	14.17	0.01	2.317	7.23	1.83	7.1	92.9	0.0	-3.45	0.45	0.76	1.53	3.5	0.003	0.64	0.0	0.04	15.12	0.00	2.545	9.73	1.38	4.5	95.5	0.0	-1.57	2.58	0.47	0.88	2.31	1993	268	1	0	0	0	0	logfile
✔	8BW0	16279	2024-12-27	2022-12-06	3.11	3.43	3.06	3.4	0.005	0.76	0.0	0.05	19.99	0.01	2.189	10.70	0.00	5.1	94.9	0.0	0.61	0.75	0.72	1.84	3.4	0.006	0.88	0.0	0.05	14.92	0.01	2.333	13.09	3.24	6.9	93.1	0.0	0.01	0.53	0.78	0.78	2.64	3201	398	7	0	13	0	0	logfile
✔	8HN1	34906	2024-12-27	2022-12-06	2.9	3.16	2.84	3.1	0.003	0.58	0.0	0.04	12.06	0.00	1.991	8.56	0.00	4.0	96.0	0.0	-0.68	0.61	0.79	2.24	3.1	0.004	0.63	0.0	0.04	15.03	0.00	2.500	6.31	2.59	4.7	95.3	0.0	0.61	0.42	0.57	0.79	2.45	3560	456	3	0	0	0	0	logfile
✔	8FEX	29033	2024-12-28	2022-12-06	3.07	3.30	3.12	3.4	0.003	0.46	0.0	0.04	13.44	0.00	1.911	7.41	0.00	5.8	94.2	0.0	-0.93	0.60	0.73	2.45	3.4	0.003	0.53	0.0	0.04	15.69	0.00	2.483	6.72	2.13	5.6	94.2	0.1	-0.51	0.35	0.59	0.73	1.75	7302	891	2	0	0	0	0	logfile
✔	8BVT	16271	2024-12-27	2022-12-06	3.94	4.42	4.04	4.3	0.009	1.22	0.0	0.05	17.64	0.01	2.157	14.86	0.23	4.2	95.8	0.0	0.33	0.60	0.78	0.48	4.3	0.003	0.84	0.0	0.04	17.62	0.00	2.579	10.44	5.59	4.6	95.4	0.0	0.62	0.31	0.60	0.78	0.48	4517	623	3	0	1	0	0	logfile
✔	8FEi	29028	2024-12-27	2022-12-06	3.0	4.02	3.08	3.6	0.007	0.91	0.0	0.05	14.00	0.00	1.541	5.78	0.18	5.1	94.9	0.0	-3.98	0.90	0.84	3.15	3.6	0.003	0.58	0.0	0.04	14.65	0.00	2.009	6.46	1.07	2.8	97.2	0.0	0.00	0.47	0.91	0.85	2.68	5189	674	2	0	2	0	0	logfile
✔	8HMY	34904	2024-12-30	2022-12-06	2.94	3.24	3.07	3.2	0.005	0.85	3.0	0.05	19.41	0.01	2.137	7.76	7.49	5.5	94.3	0.2	-2.35	0.65	0.74	2.32	3.2	0.003	0.61	0.0	0.04	19.75	0.00	2.191	6.59	5.50	3.7	96.2	0.1	0.41	1.19	0.68	0.80	2.11	11675	1368	7	90	6	0	0	logfile
✔	8FEJ	29029	2024-12-29	2022-12-06	4.64	5.33	4.68	4.6	0.001	0.37	0.0	0.04	13.97	0.00	2.030	6.27	4.30	2.9	96.9	0.2	0.48	0.88	0.69	—	4.6	0.002	0.56	0.0	0.04	12.58	0.00	2.425	7.92	0.00	6.2	93.6	0.2	-0.58	1.70	0.91	0.74	—	10464	1368	3	0	0	0	0	logfile
✔	8BW7	16280	2024-12-27	2022-12-06	3.53	4.04	3.62	4.0	0.003	0.62	0.0	0.04	17.61	0.00	2.164	11.00	0.00	3.3	96.7	0.0	0.80	0.55	0.72	1.22	4.0	0.003	0.61	0.0	0.04	18.06	0.00	2.534	9.11	4.52	3.1	96.9	0.0	0.94	0.27	0.57	0.72	1.45	4748	612	3	0	2	0	0	logfile
✔	8FEL	29032	2024-12-28	2022-12-06	4.64	5.02	4.40	4.5	0.001	0.35	0.0	0.04	14.88	0.00	2.030	6.97	1.98	3.8	96.2	0.0	-0.24	0.70	0.37	—	4.5	0.002	0.58	0.0	0.04	12.97	0.00	2.425	9.82	0.00	6.1	93.9	0.0	-0.77	2.75	0.75	0.46	—	9201	1191	3	0	0	0	0	logfile
✔	8BVR	16269	2024-12-27	2022-12-05	3.52	4.00	3.61	3.9	0.005	0.72	0.0	0.04	17.01	0.01	2.178	12.22	0.19	4.6	95.4	0.0	0.64	0.62	0.78	1.14	3.9	0.003	0.69	0.0	0.04	17.21	0.00	2.520	10.97	6.02	3.9	96.1	0.0	1.17	0.30	0.59	0.78	1.18	4806	617	3	0	3	0	0	logfile
✔	8HMV	34903	2024-12-28	2022-12-05	2.91	3.27	3.06	3.2	0.005	0.63	0.0	0.04	13.38	0.00	2.150	4.96	0.00	3.3	96.7	0.0	-0.72	0.67	0.86	4.20	3.2	0.003	0.51	0.0	0.04	15.55	0.00	2.548	3.28	1.35	2.4	97.6	0.0	0.81	0.38	0.65	0.87	3.55	8127	1022	5	0	0	0	0	logfile
✔	8HMP	34902	2024-12-28	2022-12-05	2.77	2.61	2.82	2.8	0.005	0.92	0.0	0.06	14.08	0.01	2.228	5.94	0.00	3.4	96.6	0.0	-0.73	0.63	0.79	3.64	2.7	0.003	0.69	0.0	0.04	16.83	0.00	2.424	8.92	2.76	4.0	96.0	0.0	0.41	0.43	0.62	0.82	3.42	8319	1045	6	0	1	0	0	logfile
✔	8FE1	29019	2024-12-31	2022-12-05	3.0	3.54	2.92	3.3	0.016	1.03	0.0	0.09	17.02	0.01	2.217	4.85	0.06	1.4	98.6	0.0	0.44	0.73	0.85	3.73	3.3	0.003	0.65	0.0	0.04	14.44	0.00	2.489	5.78	1.82	1.4	98.6	0.0	1.38	1.27	0.73	0.87	3.65	15445	1772	12	0	48	0	0	logfile
✔	8FDU	29014	2024-12-30	2022-12-04	3.3	3.75	3.30	3.6	0.005	0.83	0.0	0.05	13.46	0.00	2.212	12.19	0.21	4.1	95.9	0.1	-0.29	0.66	0.78	1.76	3.6	0.005	0.69	0.0	0.05	15.56	0.00	2.462	9.24	1.98	4.2	95.8	0.0	0.31	1.22	0.67	0.80	1.83	13193	1633	4	0	2	0	0	logfile
✔	8FDG	29011	2024-12-30	2022-12-03	3.2	3.62	—	3.5	0.003	0.68	0.0	0.05	14.00	0.01	2.166	10.24	0.00	11.9	88.1	0.0	-2.81	0.72	0.77	2.13	3.5	0.003	0.68	0.0	0.05	16.19	0.00	2.494	7.23	2.60	11.2	88.8	0.1	-2.71	0.45	0.72	0.78	1.81	12163	1505	1	0	0	0	0	logfile
✔	8HM0	34887	2024-12-29	2022-12-02	3.1	3.43	3.01	3.4	0.005	0.72	0.0	0.04	17.21	0.00	2.162	12.48	9.92	9.8	90.1	0.1	-4.58	0.76	0.80	2.15	3.4	0.003	0.66	0.0	0.04	17.05	0.00	2.516	8.39	5.39	6.8	93.2	0.0	-1.49	0.46	0.76	0.81	2.12	11331	1474	3	0	0	0	0	logfile
✔	8FCX	28998	2024-12-30	2022-12-01	3.04	4.27	3.25	3.6	0.003	0.60	0.0	0.04	17.79	0.00	1.984	13.10	0.61	3.9	95.4	0.7	0.34	0.85	0.79	0.79	3.6	0.003	0.62	0.0	0.04	17.62	0.00	1.838	10.41	1.28	3.6	96.1	0.4	1.52	2.52	0.87	0.83	0.99	13940	1715	10	0	10	0	0	logfile
✔	8FCW	28997	2024-12-31	2022-12-01	2.87	4.14	3.11	3.6	0.010	0.90	0.0	0.06	20.73	0.01	1.989	13.44	2.09	3.6	96.0	0.4	-0.40	0.85	0.80	1.84	3.6	0.003	0.67	0.0	0.04	19.94	0.00	1.871	9.94	2.03	2.6	97.0	0.4	1.28	1.33	0.87	0.85	1.70	15170	1715	12	60	10	0	0	logfile

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