Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YCH	33739	2024-12-28	2022-07-01	3.09	4.46	3.30	3.5	0.002	0.48	0.0	0.02	24.19	0.00	1.420	15.91	0.00	0.0	0.0	0.0	—	0.92	0.84	—	3.6	0.007	0.68	0.0	0.04	24.23	0.00	1.795	28.44	0.00	0.0	0.0	0.0	—	1.46	0.94	0.88	—	8661	0	3	404	4	0	0	logfile
✔	8DK3	27482	2024-12-28	2022-07-01	3.28	4.10	3.38	3.6	0.006	0.58	0.0	0.04	16.40	0.00	1.869	3.66	0.85	6.8	93.2	0.0	-0.13	0.85	0.87	2.42	3.7	0.005	0.59	0.0	0.04	17.70	0.00	1.896	2.21	1.22	5.3	94.7	0.0	0.04	0.39	0.86	0.88	2.38	8905	999	7	52	4	0	0	logfile
✔	7YC8	33736	2024-12-28	2022-07-01	4.14	7.25	4.31	4.1	0.002	0.51	0.0	0.02	25.12	0.00	2.079	18.05	0.00	0.0	0.0	0.0	—	0.96	0.87	—	4.1	0.006	0.82	0.0	0.04	27.70	0.01	1.971	60.55	0.00	0.0	0.0	0.0	—	1.25	0.97	0.89	—	8335	0	2	388	1	0	0	logfile
✔	7YCG	33738	2024-12-28	2022-07-01	3.18	4.71	3.37	3.5	0.002	0.50	0.0	0.03	24.46	0.00	1.893	15.83	0.00	0.0	0.0	0.0	—	0.94	0.84	—	3.5	0.007	0.68	0.0	0.04	24.51	0.00	1.848	29.82	0.00	0.0	0.0	0.0	—	0.32	0.95	0.88	—	8661	0	3	404	4	0	0	logfile
✔	8DJB	27459	2024-12-31	2022-06-30	3.18	3.51	3.10	3.3	0.005	0.72	0.0	0.06	12.90	0.00	1.908	12.93	6.96	4.2	95.6	0.2	-0.69	0.82	0.81	1.93	3.3	0.002	0.62	0.0	0.04	15.45	0.00	2.536	6.17	1.36	3.2	96.8	0.0	0.95	1.05	0.87	0.90	2.00	16781	2156	9	0	1	0	0	logfile
✔	8DJK	27460	2024-12-28	2022-06-30	3.33	3.77	3.32	3.7	0.029	1.52	1.0	1.03	32.03	0.01	1.327	7.25	0.82	5.0	95.0	0.0	-1.84	0.48	0.73	2.65	3.7	0.003	1.34	0.0	0.14	20.85	0.00	2.532	4.92	2.04	3.4	96.6	0.0	1.38	0.51	0.60	0.82	2.27	7091	870	7	0	8	0	0	logfile
✔	8AA4	15293	2024-12-30	2022-06-29	3.1	3.54	2.92	3.2	0.001	0.41	0.0	0.04	7.46	0.00	2.240	3.52	0.00	2.7	97.2	0.1	0.39	0.73	0.88	4.17	3.2	0.003	0.54	0.0	0.04	10.29	0.00	2.564	2.25	0.54	4.0	95.8	0.1	-0.02	0.94	0.73	0.89	3.86	13616	1742	2	0	0	0	0	logfile
✔	7YAJ	33714	2024-12-28	2022-06-28	3.16	3.97	3.22	3.6	0.005	0.95	0.0	0.05	18.80	0.01	2.150	9.01	1.66	2.6	97.4	0.0	-1.00	0.60	0.66	0.66	3.7	0.003	0.80	0.0	0.04	18.37	0.00	2.154	12.77	4.03	2.1	97.9	0.0	0.26	0.86	0.61	0.73	0.87	7649	997	3	0	2	0	0	logfile
✔	7YAH	33712	2024-12-28	2022-06-28	3.12	3.28	3.14	3.3	0.006	0.84	0.0	0.05	15.97	0.01	2.229	8.86	0.35	2.6	97.4	0.0	0.05	0.63	0.71	1.63	3.3	0.003	0.58	0.0	0.04	16.34	0.00	2.294	8.34	3.66	2.4	97.6	0.0	1.48	0.39	0.63	0.74	1.37	7666	999	3	0	2	0	0	logfile
✔	7YAM	33717	2024-12-27	2022-06-28	3.3	3.46	3.26	3.4	0.003	0.53	0.0	0.04	14.47	0.00	1.756	6.05	0.13	1.6	98.4	0.0	1.95	0.70	0.80	2.17	3.4	0.004	0.55	0.0	0.04	16.09	0.00	1.900	6.12	1.74	2.0	98.0	0.0	2.09	0.46	0.69	0.82	2.08	6672	871	2	0	2	0	0	logfile
✔	7YAG	33711	2024-12-31	2022-06-28	3.1	3.30	3.18	3.2	0.005	0.81	0.0	0.05	15.72	0.01	2.259	4.52	0.12	2.2	97.8	0.0	0.92	0.63	0.74	1.88	3.2	0.003	0.53	0.0	0.04	15.55	0.00	2.202	6.72	1.54	2.6	97.4	0.0	1.67	0.41	0.62	0.75	1.80	15456	999	3	0	2	0	7790	logfile
✔	8A9A	15274	2024-12-30	2022-06-28	3.3	3.59	3.34	3.6	0.003	0.67	0.0	0.04	18.00	0.00	2.116	12.52	0.14	10.5	89.1	0.4	-1.45	0.63	0.58	1.12	3.6	0.004	0.77	0.0	0.04	18.39	0.00	2.363	13.03	3.79	10.3	89.5	0.2	-2.24	1.00	0.70	0.72	1.00	12772	1618	2	0	0	0	0	logfile
✔	8Di5	27439	2024-12-27	2022-06-28	3.04	3.55	3.03	3.5	0.006	0.95	0.0	0.06	12.40	0.01	2.300	4.17	0.38	3.3	96.7	0.0	-2.40	0.65	0.80	4.29	3.5	0.004	0.65	0.0	0.04	15.31	0.00	2.429	8.55	1.89	3.9	96.1	0.0	-1.38	0.50	0.64	0.81	3.43	2467	311	3	0	1	0	0	logfile
✔	7YAE	33710	2024-12-28	2022-06-28	3.37	3.61	3.35	3.7	0.005	0.74	1.0	0.05	14.62	0.00	2.207	12.85	0.92	5.2	94.8	0.0	-0.26	0.58	0.64	1.18	3.6	0.003	0.65	0.0	0.04	15.83	0.00	2.533	7.81	2.34	4.7	95.3	0.0	0.00	1.06	0.61	0.68	0.93	9031	1146	8	0	4	0	0	logfile
✔	7YAi	33713	2024-12-28	2022-06-28	3.14	3.36	3.24	3.3	0.004	0.78	0.0	0.05	16.33	0.00	2.075	7.62	0.35	1.8	98.2	0.0	0.56	0.67	0.75	1.64	3.3	0.002	0.58	0.0	0.04	16.28	0.00	2.348	8.78	2.95	1.6	98.4	0.0	1.58	1.03	0.64	0.76	1.56	7678	1001	3	0	2	0	0	logfile
✔	8DHX	27437	2024-12-30	2022-06-28	2.92	3.26	3.25	6.7	0.004	0.82	0.0	0.04	17.61	0.00	2.218	6.05	1.95	1.8	97.7	0.6	3.55	0.41	0.20	4.09	3.3	0.003	0.60	0.0	0.03	18.40	0.00	2.625	5.51	1.65	1.8	98.2	0.0	5.52	0.42	0.70	0.78	3.23	34200	4152	24	0	0	0	0	logfile
✔	7YAT	33719	2024-12-27	2022-06-28	2.2	2.33	1.39	2.3	0.009	1.06	0.0	0.06	14.84	0.00	2.267	9.86	0.00	4.3	95.7	0.0	-4.79	0.61	0.88	7.98	2.3	0.002	0.72	0.0	0.05	15.28	0.00	2.674	12.57	0.26	0.5	99.5	0.0	-5.12	0.36	0.63	0.90	7.32	4129	600	45	0	0	25	0	logfile
✔	8A9B	15275	2024-12-27	2022-06-28	4.0	4.28	3.95	4.1	0.004	0.88	0.0	0.05	14.89	0.00	2.113	20.52	0.00	14.8	84.2	1.0	-3.17	0.67	0.58	—	4.1	0.003	0.78	0.0	0.04	17.18	0.00	2.479	15.99	2.43	13.4	86.1	0.5	-2.92	0.59	0.71	0.63	—	6386	809	1	0	0	0	0	logfile
✔	8DHM	27436	2024-12-30	2022-06-27	2.73	3.45	2.74	3.3	0.006	0.76	0.0	0.04	12.98	0.01	2.002	5.25	0.65	1.7	98.3	0.0	0.74	0.71	0.83	3.56	3.2	0.004	0.58	0.0	0.04	13.89	0.00	2.384	2.93	0.32	1.7	98.3	0.0	3.71	1.19	0.64	0.88	3.09	11698	734	6	0	5	91	5900	logfile
✔	8A93	15267	2024-12-28	2022-06-27	3.05	3.59	3.21	3.4	0.005	0.57	0.0	0.04	18.98	0.00	2.072	4.02	0.64	3.4	96.6	0.0	1.45	0.73	0.86	2.30	3.4	0.003	0.55	0.0	0.04	19.29	0.00	1.991	3.81	1.75	2.8	97.2	0.0	1.70	1.24	0.71	0.86	2.16	7353	828	9	44	4	0	0	logfile

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