Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8A00	15043	2024-12-27	2022-05-26	2.6	2.71	2.57	2.7	0.002	0.58	0.0	0.05	14.42	0.00	2.321	2.79	0.00	6.5	93.5	0.0	-3.74	0.39	0.89	5.54	2.7	0.004	0.66	0.0	0.05	17.42	0.00	2.522	4.50	1.69	7.2	92.0	0.7	-3.84	0.94	0.40	0.91	5.64	3315	408	3	0	0	0	0	logfile
✔	8A05	15048	2024-12-27	2022-05-26	3.4	3.47	3.11	3.5	0.002	0.43	0.0	0.05	12.67	0.00	2.328	2.02	0.00	2.2	97.8	0.0	0.42	0.37	0.84	2.71	3.5	0.003	0.48	0.0	0.05	14.62	0.00	2.624	2.02	1.20	1.1	98.9	0.0	0.38	0.21	0.36	0.85	2.71	764	91	2	0	5	0	0	logfile
✔	7XW9	33494	2024-12-28	2022-05-26	2.7	2.10	2.82	1.8	0.005	0.68	0.0	0.05	12.26	0.01	2.167	6.26	0.00	3.5	96.5	0.0	0.37	0.78	0.77	3.77	1.8	0.004	0.63	0.0	0.04	15.43	0.00	2.531	5.75	2.45	3.5	96.5	0.0	1.11	1.49	0.80	0.80	3.42	8988	1143	7	0	1	0	0	logfile
✔	8A02	15045	2024-12-27	2022-05-26	3.2	3.27	3.19	3.3	0.003	0.47	0.0	0.05	14.61	0.00	2.264	4.31	0.00	2.0	98.0	0.0	0.16	0.53	0.84	2.28	3.3	0.006	0.62	0.0	0.05	17.31	0.00	2.569	3.77	2.70	3.2	96.6	0.1	-0.45	0.28	0.51	0.86	2.62	5511	717	3	0	0	0	0	logfile
✔	7XW2	33489	2024-12-28	2022-05-26	3.04	3.31	3.11	3.3	0.007	1.05	2.0	0.07	17.35	0.01	1.891	7.50	0.92	4.8	95.2	0.0	-3.30	0.66	0.71	1.93	3.3	0.003	0.62	0.0	0.04	18.41	0.01	2.317	6.84	1.69	4.2	95.8	0.0	-0.44	1.02	0.66	0.72	1.82	6992	725	3	54	2	0	0	logfile
✔	8A03	15046	2024-12-27	2022-05-26	3.2	3.30	3.21	3.3	0.002	0.44	0.0	0.04	14.18	0.00	2.399	3.41	0.00	2.4	97.6	0.0	0.63	0.51	0.84	2.31	3.3	0.003	0.55	0.0	0.05	16.65	0.00	2.512	3.14	2.22	2.8	97.2	0.0	0.09	0.38	0.52	0.87	2.64	5511	717	3	0	0	0	0	logfile
✔	8A04	15047	2024-12-27	2022-05-26	3.2	3.28	3.22	3.3	0.004	0.60	0.0	0.05	14.53	0.00	2.113	4.31	0.00	1.5	98.5	0.0	-0.52	0.52	0.85	3.07	3.3	0.005	0.58	0.0	0.05	16.54	0.00	2.552	2.33	2.38	3.2	96.8	0.0	-0.49	0.30	0.50	0.86	2.77	5511	717	3	0	0	0	0	logfile
✔	7XW5	33491	2024-12-30	2022-05-26	2.96	3.19	2.99	3.2	0.014	1.88	8.0	0.10	12.54	0.02	2.119	2.60	0.53	4.6	95.4	0.0	-0.98	0.61	0.73	3.28	3.2	0.003	0.66	0.0	0.04	14.02	0.00	2.512	5.64	2.11	2.3	97.7	0.0	0.74	0.74	0.68	0.80	2.33	12618	1522	10	0	27	0	0	logfile
✔	8A06	15051	2024-12-27	2022-05-26	4.0	3.63	3.78	3.8	0.003	0.56	0.0	0.05	13.75	0.00	2.201	6.79	0.73	2.8	97.2	0.0	-0.86	0.27	0.78	—	3.7	0.004	0.62	0.0	0.05	17.34	0.00	2.613	4.67	9.49	4.1	95.9	0.0	-1.14	0.41	0.26	0.79	—	1185	147	1	0	0	0	0	logfile
✔	8A01	15044	2024-12-27	2022-05-26	3.2	3.25	3.20	3.2	0.002	0.44	0.0	0.05	14.81	0.00	2.289	4.13	0.00	2.0	98.0	0.0	0.02	0.48	0.86	2.87	3.2	0.002	0.46	0.0	0.05	16.79	0.00	2.594	2.87	1.59	2.4	97.6	0.0	-0.19	0.24	0.47	0.87	2.60	5511	717	3	0	0	0	0	logfile
✔	7XW3	33490	2024-12-30	2022-05-26	4.04	4.31	4.11	4.2	0.009	1.24	4.0	0.07	16.20	0.01	2.218	16.13	2.51	8.4	91.5	0.1	-4.09	0.72	0.64	—	4.2	0.003	0.67	0.0	0.04	14.93	0.00	2.358	9.47	0.00	4.8	95.2	0.0	-0.95	1.35	0.71	0.63	—	12081	1502	1	0	0	0	0	logfile
✔	7XWo	33497	2024-12-28	2022-05-26	2.7	2.15	2.94	1.9	0.007	0.87	0.0	0.06	13.89	0.01	2.275	4.65	0.22	5.7	94.3	0.0	-4.88	0.76	0.76	3.57	2.0	0.003	0.64	0.0	0.04	16.06	0.00	2.479	7.44	3.26	3.4	96.6	0.0	-0.84	0.45	0.77	0.78	2.61	8725	1131	6	0	0	0	0	logfile
✔	7ZZ1	15031	2024-12-27	2022-05-25	2.27	2.59	2.22	2.1	0.007	0.89	0.0	0.05	18.25	0.01	2.159	3.90	2.68	2.6	97.4	0.0	-1.05	0.91	0.90	4.22	2.1	0.004	0.64	0.0	0.04	17.82	0.00	2.074	6.66	2.68	2.6	97.4	0.0	0.99	1.10	0.91	0.90	4.26	4958	618	5	0	4	55	0	logfile
✔	7ZZ2	15032	2024-12-27	2022-05-25	2.48	2.80	2.37	2.1	0.005	0.76	0.0	0.05	17.25	0.01	2.132	4.21	3.27	2.2	97.8	0.0	-0.30	0.90	0.89	3.91	2.1	0.003	0.54	0.0	0.04	17.27	0.00	2.095	4.68	1.96	1.7	98.3	0.0	1.54	1.09	0.90	0.90	3.66	4366	541	2	0	3	57	0	logfile
✔	7ZYZ	15029	2024-12-27	2022-05-25	2.47	2.56	2.40	2.2	0.007	0.87	0.0	0.05	18.66	0.01	1.973	9.47	5.45	2.8	97.2	0.0	-0.23	0.87	0.87	3.85	2.2	0.003	0.61	0.0	0.04	18.33	0.00	2.122	6.90	2.61	2.6	97.4	0.0	0.94	0.40	0.88	0.88	3.44	4349	541	2	0	2	38	0	logfile
✔	7ZZ0	15030	2024-12-27	2022-05-25	2.26	2.63	2.22	2.1	0.004	0.71	0.0	0.05	16.82	0.00	2.149	3.28	1.96	1.9	98.1	0.0	-0.34	0.92	0.91	4.41	2.1	0.003	0.53	0.0	0.04	16.82	0.00	2.073	3.28	2.40	1.9	98.1	0.0	1.45	0.22	0.92	0.91	4.56	4387	541	2	0	2	84	0	logfile
✔	7ZZ5	15035	2024-12-27	2022-05-25	2.43	2.83	2.33	2.1	0.008	1.04	0.0	0.05	17.81	0.01	2.256	4.98	1.86	3.3	96.7	0.0	-1.00	0.89	0.88	3.98	2.1	0.003	0.61	0.0	0.04	17.36	0.00	2.466	7.46	1.86	3.5	96.5	0.0	0.58	0.27	0.89	0.88	4.09	3633	461	2	0	2	0	0	logfile
✔	7ZYL	15026	2024-12-27	2022-05-25	2.08	2.56	2.12	2.4	0.022	0.98	0.0	0.05	24.65	0.00	2.104	14.15	0.00	0.8	99.2	0.0	0.55	0.77	0.89	6.49	2.4	0.003	0.59	0.0	0.04	20.03	0.00	2.595	4.50	1.67	0.8	99.2	0.0	0.47	0.34	0.79	0.90	6.49	3992	484	12	0	12	0	0	logfile
✔	7ZZ6	15036	2024-12-28	2022-05-25	2.15	2.39	2.12	2.1	0.006	0.68	0.0	0.04	17.30	0.00	1.385	8.71	3.48	2.9	97.1	0.0	0.64	0.91	0.90	4.87	2.1	0.003	0.60	0.0	0.04	17.00	0.00	2.046	5.41	1.51	2.5	97.5	0.0	1.29	0.26	0.92	0.91	4.51	8257	1017	6	0	6	157	0	logfile
✔	7ZZ4	15034	2024-12-27	2022-05-25	2.63	3.04	2.56	2.2	0.008	1.05	0.0	0.05	18.14	0.00	2.035	5.21	0.27	3.3	96.7	0.0	-0.79	0.86	0.84	4.14	2.2	0.003	0.56	0.0	0.04	17.50	0.00	1.918	6.99	1.06	3.7	96.3	0.0	0.98	1.10	0.86	0.84	3.83	3682	463	2	0	3	11	0	logfile

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