Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9B1K	44082	2024-12-27	2024-03-13	3.3	3.55	3.32	3.5	0.006	0.74	0.0	0.04	10.55	0.00	2.265	1.26	0.00	1.8	98.2	0.0	0.11	0.55	0.79	2.89	3.5	0.003	0.61	0.0	0.04	13.97	0.00	2.569	5.68	3.15	2.4	97.6	0.0	1.93	1.13	0.54	0.79	2.41	3911	512	2	0	1	0	0	logfile
✔	9ENC	19831	2024-12-27	2024-03-12	3.36	4.12	3.44	3.9	0.002	0.51	0.0	0.04	21.40	0.00	2.232	3.79	0.20	5.3	94.7	0.0	-0.18	0.88	0.87	2.37	3.9	0.002	0.50	0.0	0.03	21.61	0.00	2.485	3.18	1.40	4.7	95.3	0.0	0.28	1.30	0.87	0.86	1.67	6249	566	3	75	0	0	0	logfile
✔	9ENF	19833	2024-12-28	2024-03-12	2.97	4.02	3.10	3.1	0.003	0.61	0.0	0.04	24.22	0.00	2.114	15.41	0.00	7.6	92.4	0.0	-1.68	0.78	0.64	1.13	3.1	0.004	0.97	1.0	0.04	24.30	0.00	1.680	12.65	1.93	6.1	93.9	0.0	-2.06	0.97	0.79	0.66	0.69	8235	530	4	182	0	0	0	logfile
✔	9ENB	19830	2024-12-28	2024-03-12	2.66	3.33	2.75	3.1	0.006	0.55	0.0	0.04	22.37	0.00	2.149	4.96	0.72	4.7	95.3	0.0	-0.08	0.86	0.88	4.12	3.1	0.005	0.55	0.0	0.04	22.10	0.00	2.097	3.35	0.54	4.4	95.6	0.0	0.70	0.87	0.85	0.87	3.88	8264	636	6	144	6	0	0	logfile
✔	8Yo3	39434	2024-12-29	2024-03-12	3.62	3.81	3.65	3.8	0.002	0.57	0.0	0.04	16.91	0.00	2.177	10.08	0.73	4.6	95.4	0.0	0.06	0.73	0.79	1.70	3.8	0.003	0.63	0.0	0.04	17.03	0.00	2.492	9.82	3.06	5.0	95.0	0.0	0.00	1.47	0.73	0.80	1.66	11514	1430	4	0	0	0	0	logfile
✔	8Yo4	39435	2024-12-30	2024-03-12	3.2	3.42	3.23	3.4	0.003	0.57	0.0	0.04	19.70	0.00	2.047	9.54	0.24	8.1	91.9	0.0	-2.05	0.70	0.82	2.08	3.4	0.003	0.57	0.0	0.04	20.04	0.00	2.009	6.90	4.20	7.8	92.2	0.1	-1.51	0.27	0.69	0.81	1.98	12698	1452	8	48	4	0	0	logfile
✔	8Yo5	39436	2024-12-29	2024-03-12	3.93	4.14	3.96	4.0	0.003	0.63	0.0	0.04	18.80	0.00	2.130	13.20	0.54	5.6	94.4	0.0	-1.41	0.81	0.81	0.90	4.0	0.003	0.66	0.0	0.04	19.18	0.00	2.458	11.27	3.34	5.5	94.5	0.0	-0.99	0.39	0.81	0.81	0.73	10342	1284	4	0	0	0	0	logfile
✔	9B0L	44046	2024-12-27	2024-03-12	2.99	3.13	2.98	3.1	0.004	0.58	0.0	0.04	21.94	0.00	1.888	7.55	0.23	3.7	96.3	0.0	1.24	0.64	0.66	1.96	3.1	0.003	0.57	0.0	0.04	22.34	0.00	2.080	10.38	2.51	3.0	97.0	0.0	0.86	1.12	0.78	0.80	2.48	7051	466	6	155	2	0	0	logfile
✔	9ENE	19832	2024-12-28	2024-03-12	3.15	3.87	3.19	3.4	0.004	0.64	0.0	0.06	22.56	0.01	2.233	7.49	1.04	5.9	94.1	0.0	-0.77	0.89	0.87	2.75	3.4	0.003	0.60	0.0	0.06	22.19	0.00	2.263	3.26	2.25	4.4	95.6	0.0	-0.72	0.26	0.89	0.87	2.14	8484	658	4	146	0	0	0	logfile
✔	8Yo7	39437	2024-12-29	2024-03-12	3.16	3.32	3.21	3.3	0.005	0.65	1.0	0.04	20.57	0.00	1.597	13.44	1.06	5.9	94.1	0.0	-0.79	0.73	0.78	1.60	3.3	0.003	0.61	0.0	0.04	20.58	0.00	2.057	10.18	3.72	5.2	94.8	0.0	-0.63	0.36	0.73	0.80	1.67	11395	1310	14	38	4	2	0	logfile
✔	8YNK	39425	2024-12-31	2024-03-11	3.62	4.24	3.85	4.0	0.002	0.40	0.0	0.03	13.75	0.00	2.242	4.95	0.00	3.0	97.0	0.0	1.98	0.81	0.82	0.72	4.0	0.002	0.60	0.0	0.04	16.23	0.00	2.467	7.57	1.97	3.3	96.7	0.0	1.71	0.84	0.82	0.84	0.69	11564	1409	8	0	0	0	0	logfile
✔	8YNL	39426	2024-12-31	2024-03-11	3.55	4.16	3.78	4.0	0.002	0.39	0.0	0.03	13.83	0.00	2.280	5.24	0.00	1.9	98.1	0.0	1.87	0.80	0.83	0.94	4.0	0.002	0.57	0.0	0.04	16.30	0.00	2.408	6.18	1.22	2.9	97.1	0.0	1.68	2.03	0.81	0.84	0.65	12977	1583	9	0	0	0	0	logfile
✔	9AZL	44015	2024-12-29	2024-03-11	2.99	3.39	3.10	3.3	0.003	0.60	0.0	0.04	15.61	0.00	2.016	6.97	1.39	3.2	96.8	0.0	1.55	0.57	0.80	2.93	3.3	0.003	0.57	0.0	0.04	16.12	0.00	1.986	5.36	1.55	3.6	96.4	0.0	1.69	0.69	0.64	0.85	2.58	11252	1428	4	0	5	0	0	logfile
✔	9EMC	19817	2024-12-31	2024-03-11	3.26	3.86	3.07	3.6	0.011	1.34	0.0	0.08	18.59	0.01	2.075	5.04	1.44	2.5	97.5	0.0	-3.73	0.75	0.68	0.35	3.6	0.004	0.77	1.0	0.04	17.63	0.00	1.938	6.26	1.62	2.6	97.4	0.0	1.41	1.14	0.82	0.90	1.95	15489	1977	12	0	12	0	0	logfile
✔	8YNN	39428	2024-12-30	2024-03-11	3.97	4.69	4.07	4.2	0.003	0.43	0.0	0.03	14.00	0.00	2.268	6.44	0.00	2.8	97.2	0.0	2.28	0.86	0.84	0.69	4.2	0.003	0.71	0.0	0.04	16.17	0.00	2.417	9.92	1.91	3.5	96.4	0.1	1.42	0.85	0.87	0.85	0.27	10119	1232	7	0	0	0	0	logfile
✔	8YNi	39424	2024-12-30	2024-03-11	3.66	4.28	3.83	4.0	0.002	0.42	0.0	0.03	13.96	0.00	2.202	5.65	0.00	2.0	98.0	0.0	1.62	0.81	0.83	0.77	4.0	0.003	0.66	0.0	0.04	16.68	0.00	2.492	6.95	1.55	3.1	96.9	0.1	1.18	1.19	0.81	0.83	0.98	13529	1657	11	0	0	0	0	logfile
✔	8YN3	39413	2024-12-28	2024-03-10	2.56	2.65	2.55	2.7	0.003	0.46	0.0	0.05	9.76	0.00	2.248	3.92	0.79	1.4	98.6	0.0	1.26	0.72	0.86	4.65	2.7	0.003	0.52	0.0	0.04	14.16	0.00	2.456	3.86	2.03	2.0	98.0	0.0	1.74	0.40	0.71	0.86	3.66	8201	1042	6	0	2	0	0	logfile
✔	8YN5	39415	2024-12-28	2024-03-10	2.7	2.85	2.67	2.8	0.002	0.53	0.0	0.06	9.60	0.00	2.209	4.33	0.42	1.6	98.4	0.0	1.27	0.71	0.85	4.97	2.8	0.003	0.56	0.0	0.04	13.44	0.00	2.532	5.16	1.57	1.9	98.1	0.0	1.79	1.17	0.72	0.86	3.77	9047	1141	6	0	6	0	0	logfile
✔	8YN9	39419	2024-12-28	2024-03-10	2.3	2.56	2.39	2.5	0.004	0.63	0.0	0.06	10.63	0.00	2.237	4.32	0.73	1.5	98.5	0.0	1.12	0.70	0.84	5.10	2.5	0.004	0.57	0.0	0.04	13.64	0.00	2.505	4.60	1.57	2.2	97.8	0.0	1.54	0.38	0.71	0.85	4.55	9048	1130	6	0	8	2	0	logfile
✔	8YN4	39414	2024-12-28	2024-03-10	2.97	3.15	2.94	3.1	0.002	0.40	0.0	0.04	8.47	0.00	2.276	4.44	0.33	1.1	98.9	0.0	1.49	0.67	0.81	3.52	3.1	0.003	0.62	0.0	0.04	14.58	0.00	2.521	7.18	2.96	1.8	98.2	0.0	1.53	1.24	0.67	0.81	3.13	8661	1127	6	0	2	0	0	logfile

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