Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SBF	24978	2024-12-28	2021-09-24	2.9	3.28	—	3.2	0.005	0.65	0.0	0.05	12.82	0.00	2.200	7.87	0.23	3.8	96.1	0.1	-0.02	0.75	0.82	3.04	3.2	0.003	0.63	0.0	0.04	15.95	0.00	2.503	8.05	2.60	3.7	96.3	0.0	0.46	0.43	0.75	0.84	2.94	8525	1119	6	0	1	0	0	logfile
✔	7SAT	24956	2024-12-28	2021-09-23	3.9	3.85	3.80	3.8	0.004	0.76	0.0	0.04	14.44	0.00	2.080	15.57	0.28	7.4	92.6	0.0	0.06	0.61	0.77	1.82	3.8	0.004	0.87	0.0	0.04	17.15	0.00	2.383	13.31	1.69	5.8	94.2	0.0	0.60	0.64	0.62	0.77	1.31	6581	822	7	0	0	0	0	logfile
✔	7SAZ	24959	2024-12-27	2021-09-23	3.0	3.13	2.81	3.1	0.004	0.63	0.0	0.04	13.70	0.00	2.188	9.47	0.00	3.7	96.2	0.1	0.22	0.63	0.85	2.55	3.1	0.003	0.54	0.0	0.04	17.14	0.00	2.609	7.10	2.38	2.8	97.2	0.0	1.86	0.47	0.62	0.86	1.80	5708	722	7	0	0	0	0	logfile
✔	7SAS	24955	2024-12-29	2021-09-23	3.7	3.32	—	4.1	0.005	0.87	0.0	0.07	13.33	0.01	2.033	18.82	0.00	12.0	88.0	0.0	-3.25	0.40	0.67	1.98	4.1	0.005	0.89	0.0	0.06	15.20	0.00	2.472	9.97	6.03	12.1	87.9	0.0	-3.68	0.64	0.44	0.76	3.36	11420	1350	20	0	40	0	0	logfile
✔	7SAX	24958	2024-12-27	2021-09-23	3.0	2.60	2.97	3.0	0.007	0.66	0.0	0.04	13.54	0.00	2.174	5.46	0.00	3.3	96.7	0.0	1.22	0.58	0.85	2.70	2.9	0.002	0.50	0.0	0.04	17.16	0.00	2.477	5.18	2.69	2.5	97.5	0.0	3.01	0.49	0.60	0.86	1.73	5305	689	7	0	0	0	0	logfile
✔	7PSN	13615	2024-12-29	2021-09-23	2.9	3.55	—	3.5	0.009	0.82	0.0	0.04	15.99	0.01	1.923	4.83	0.00	2.7	97.3	0.0	-3.01	0.59	0.78	3.43	3.5	0.003	0.58	0.0	0.04	16.14	0.00	1.994	5.84	2.00	2.1	97.9	0.0	1.49	0.50	0.58	0.79	2.42	9464	1170	4	0	8	0	0	logfile
✔	7SB2	24961	2024-12-27	2021-09-23	3.4	3.66	3.14	3.3	0.007	0.79	0.0	0.04	14.92	0.00	2.178	23.65	0.00	8.4	91.4	0.2	-0.29	0.83	0.84	1.22	3.3	0.003	0.73	0.0	0.04	16.60	0.00	2.400	13.33	0.99	4.9	95.1	0.0	0.77	0.50	0.82	0.85	0.58	4715	598	2	0	0	0	0	logfile
✔	7SAU	24957	2024-12-27	2021-09-23	3.0	2.41	2.77	2.7	0.005	0.61	0.0	0.04	13.77	0.01	2.122	6.13	0.15	5.1	94.9	0.0	0.64	0.61	0.84	3.01	2.7	0.004	0.60	0.0	0.04	17.11	0.00	2.556	5.74	1.97	5.0	95.0	0.0	2.22	0.50	0.60	0.85	2.77	6317	791	7	0	0	0	0	logfile
✔	7SAR	24954	2024-12-29	2021-09-23	3.2	3.05	—	3.5	0.005	0.80	0.0	0.07	13.63	0.01	2.033	15.13	0.00	11.3	88.7	0.0	-3.51	0.50	0.76	3.18	3.4	0.004	0.74	0.0	0.06	15.02	0.00	2.571	6.68	5.16	8.3	91.7	0.0	-3.19	1.67	0.43	0.81	3.92	11420	1350	20	0	40	0	0	logfile
✔	7SAQ	24953	2024-12-27	2021-09-23	2.9	2.87	—	3.1	0.006	0.84	0.0	0.07	14.71	0.02	2.029	11.87	0.00	12.8	87.2	0.0	-3.19	0.57	0.76	4.42	3.1	0.005	0.82	0.0	0.07	15.78	0.00	2.593	7.29	3.81	8.4	91.6	0.0	-3.29	1.18	0.50	0.81	4.79	5710	675	10	0	20	0	0	logfile
✔	7PSL	13613	2024-12-29	2021-09-23	3.3	3.77	—	3.7	0.006	0.65	0.0	0.04	15.10	0.00	2.258	5.27	0.00	3.9	96.1	0.0	-3.04	0.61	0.76	2.57	3.7	0.004	0.62	0.0	0.04	16.55	0.00	2.487	7.77	1.94	2.5	97.5	0.0	1.29	1.29	0.59	0.77	1.84	9612	1200	4	0	4	0	0	logfile
✔	7SAM	24952	2024-12-27	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	23.50	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.89	0.0	0.04	28.04	0.01	1.982	71.15	0.00	0.0	0.0	0.0	—	5.48	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	7VHP	32002	2024-12-31	2021-09-22	3.27	3.30	—	3.2	0.003	0.63	0.0	0.04	13.46	0.00	1.149	15.64	0.32	3.1	96.8	0.0	1.82	0.78	0.73	1.24	3.2	0.003	0.62	1.0	0.04	16.27	0.00	2.008	7.71	2.13	3.4	96.6	0.0	1.83	1.33	0.85	0.83	1.51	66600	8304	48	0	0	0	0	logfile
✔	7PRU	13610	2024-12-28	2021-09-22	3.2	3.55	3.24	3.5	0.010	1.05	0.0	0.06	14.87	0.01	2.128	9.65	0.00	6.8	93.2	0.0	-2.01	0.67	0.83	2.06	3.5	0.003	0.64	0.0	0.04	16.34	0.00	2.561	9.38	2.28	4.9	95.1	0.0	0.77	1.21	0.63	0.82	1.76	9116	1164	4	0	2	0	0	logfile
✔	7VHQ	32003	2024-12-31	2021-09-22	3.27	3.68	—	3.5	0.003	0.60	0.0	0.04	13.43	0.00	2.165	9.53	0.00	3.1	96.9	0.0	1.82	0.73	0.82	1.67	3.5	0.003	0.62	0.0	0.04	15.50	0.00	2.427	7.74	1.50	3.3	96.7	0.0	1.88	0.40	0.74	0.84	1.53	16650	2076	12	0	0	0	0	logfile
✔	7PSD	13612	2024-12-28	2021-09-22	3.0	3.33	2.96	3.2	0.015	1.12	0.0	0.07	14.39	0.01	2.146	7.65	0.00	5.5	94.5	0.0	-1.38	0.70	0.87	2.60	3.2	0.003	0.62	0.0	0.04	16.08	0.00	2.514	8.69	2.18	2.6	97.4	0.0	1.88	0.41	0.62	0.84	2.52	9032	1160	2	0	0	0	0	logfile
✔	7SAE	24950	2024-12-31	2021-09-22	3.0	3.49	—	3.0	0.008	0.99	0.0	0.05	24.29	0.01	2.251	2.73	0.29	7.8	92.1	0.1	-4.37	0.81	0.78	3.61	3.0	0.004	0.62	0.0	0.04	23.91	0.01	2.063	4.81	1.15	6.0	94.0	0.0	-1.64	0.92	0.87	0.91	2.73	68571	2090	19	2434	0	0	0	logfile
✔	7S9U	24937	2024-12-31	2021-09-21	3.2	3.94	—	3.1	0.011	0.96	0.0	0.06	24.72	0.01	1.016	12.03	1.90	15.2	84.3	0.4	-5.38	0.66	0.63	2.37	3.1	0.004	0.63	0.0	0.04	24.13	0.00	2.105	6.63	3.11	7.2	92.7	0.1	-2.26	0.41	0.89	0.90	1.64	68620	2090	19	2436	0	0	0	logfile
✔	7S9W	24939	2024-12-30	2021-09-21	3.4	3.38	—	3.4	0.011	1.16	1.0	0.05	15.91	0.01	2.308	2.86	0.47	2.3	97.7	0.1	-0.94	0.64	0.78	1.96	3.4	0.002	0.58	0.0	0.04	16.40	0.00	2.499	3.15	2.01	2.3	97.7	0.0	0.40	0.32	0.62	0.77	1.89	14052	1767	4	7	1	0	0	logfile
✔	7PQG	13593	2024-12-27	2021-09-21	3.7	4.20	—	4.0	0.004	0.88	0.0	0.05	12.56	0.01	2.204	28.36	0.28	7.4	92.6	0.0	-0.87	0.56	0.76	0.82	4.0	0.004	1.09	0.0	0.06	15.88	0.01	2.463	28.06	2.52	6.4	93.6	0.0	-1.24	1.21	0.56	0.77	0.82	3251	423	2	0	0	0	0	logfile

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