Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VL8	32020	2024-12-28	2021-10-02	2.9	3.53	—	3.5	0.008	0.93	0.0	0.07	12.53	0.00	2.289	5.92	0.00	3.2	96.8	0.0	-1.45	0.56	0.71	1.61	3.5	0.003	0.63	0.0	0.04	15.48	0.00	2.485	6.78	2.77	2.5	97.5	0.0	0.38	1.60	0.47	0.64	1.46	8834	1132	6	0	1	0	0	logfile
✔	7PVD	13667	2024-12-28	2021-10-02	3.7	3.80	2.77	3.7	0.007	0.83	0.0	0.05	18.68	0.00	2.134	13.11	0.32	3.9	96.1	0.0	-1.16	0.69	0.67	1.54	3.7	0.003	0.73	0.0	0.04	15.99	0.00	2.261	12.13	2.89	4.1	95.9	0.0	-0.06	0.83	0.72	0.72	1.21	8902	1035	22	0	43	0	0	logfile
✔	7PUY	13662	2024-12-29	2021-10-01	3.3	3.42	2.55	3.3	0.006	0.74	0.0	0.05	17.93	0.00	2.067	13.87	1.90	3.0	97.0	0.0	-0.75	0.70	0.68	1.46	3.3	0.003	0.76	0.0	0.04	15.31	0.00	2.321	14.11	2.26	4.3	95.7	0.0	-0.24	0.70	0.73	0.74	1.64	10395	1224	24	0	42	0	0	logfile
✔	7VKU	32019	2024-12-28	2021-10-01	3.2	3.40	—	3.3	0.013	1.24	5.0	0.08	16.10	0.01	1.611	10.48	2.23	10.1	89.2	0.7	-5.75	0.76	0.83	2.96	3.3	0.004	1.03	1.0	0.04	16.73	0.00	2.165	7.93	1.84	8.8	91.0	0.2	-1.47	0.57	0.73	0.85	2.61	9219	1154	4	0	0	0	0	logfile
✔	7SEP	25074	2024-12-28	2021-10-01	3.8	2.53	3.76	1.6	0.006	0.66	0.0	0.05	12.76	0.01	2.155	10.23	8.22	5.0	95.0	0.0	-0.19	0.72	0.72	2.36	1.6	0.003	0.66	0.0	0.05	16.75	0.01	2.501	10.55	6.91	3.3	96.7	0.0	-0.23	1.29	0.72	0.71	2.18	7641	930	2	0	0	0	0	logfile
✔	7SD0	25044	2024-12-30	2021-09-29	2.95	3.72	2.97	3.5	0.007	0.97	3.0	0.07	13.55	0.00	1.813	11.57	0.91	5.3	94.7	0.0	-2.03	0.79	0.74	1.81	3.5	0.003	0.72	0.0	0.04	15.73	0.00	2.029	11.70	1.37	4.7	95.3	0.0	-1.77	1.01	0.80	0.76	1.38	7729	965	5	0	4	0	0	logfile
✔	7SDE	23517	2024-12-27	2021-09-29	3.2	3.37	—	3.3	0.004	0.92	1.0	0.06	17.03	0.00	2.201	25.84	8.60	10.6	89.1	0.3	-4.65	0.74	0.77	2.50	3.3	0.003	0.70	0.0	0.04	17.35	0.00	2.216	8.03	3.64	7.1	92.9	0.0	-0.39	1.20	0.75	0.79	2.09	5734	726	2	0	0	0	0	logfile
✔	7SCK	25037	2024-12-29	2021-09-28	2.8	2.26	2.83	2.1	0.005	0.61	0.0	0.05	13.39	0.00	1.744	9.55	0.36	5.5	94.5	0.0	-0.14	0.75	0.73	3.35	1.9	0.003	0.70	0.0	0.05	15.35	0.00	2.134	10.98	1.89	4.6	95.4	0.1	-0.48	0.56	0.77	0.76	2.42	10250	1240	8	2	9	0	0	logfile
✔	7PU7	13654	2024-12-28	2021-09-28	2.9	2.65	—	3.1	0.008	1.34	2.0	0.11	16.90	0.01	2.280	4.23	1.28	3.1	96.9	0.0	-1.39	0.83	0.85	3.37	3.1	0.004	0.67	0.0	0.04	17.91	0.00	2.399	4.00	2.79	3.5	96.5	0.0	0.02	1.35	0.83	0.85	3.31	8990	1070	4	33	4	3	0	logfile
✔	7SCG	25034	2024-12-28	2021-09-28	3.0	3.41	—	3.3	0.005	0.61	0.0	0.04	12.87	0.00	2.274	9.34	0.00	4.4	95.6	0.0	-0.30	0.75	0.88	4.53	3.3	0.003	0.57	0.0	0.04	14.93	0.00	2.545	3.15	2.36	3.3	96.7	0.0	0.98	0.33	0.71	0.88	3.19	8539	1121	6	0	1	2	0	logfile
✔	7SC8	25029	2024-12-29	2021-09-27	2.1	2.19	2.13	1.9	0.008	1.12	10.0	0.07	14.65	0.01	2.102	5.20	0.38	1.0	99.0	0.0	2.13	0.82	0.79	4.35	1.9	0.003	0.58	0.0	0.04	16.05	0.00	2.341	6.82	1.55	1.0	98.9	0.1	3.01	0.38	0.86	0.86	3.89	56784	6836	116	0	54	2672	0	logfile
✔	7PTY	13643	2024-12-30	2021-09-27	4.63	5.10	—	4.5	0.003	0.68	0.0	0.04	13.76	0.00	2.199	25.20	0.00	10.9	89.1	0.0	-1.41	0.88	0.76	—	4.5	0.003	0.66	0.0	0.04	14.12	0.00	2.350	16.25	0.00	8.8	91.2	0.0	-1.04	0.36	0.89	0.77	—	13433	1715	2	0	0	0	0	logfile
✔	7PTX	13642	2024-12-28	2021-09-27	4.03	4.17	—	3.9	0.003	0.76	0.0	0.05	14.08	0.01	2.202	19.18	0.00	10.6	89.4	0.0	-1.97	0.84	0.72	—	3.9	0.004	0.80	0.0	0.05	14.46	0.00	2.400	17.40	0.00	10.2	89.8	0.0	-1.59	0.57	0.85	0.74	—	7653	1000	1	0	0	0	0	logfile
✔	7SC5	25022	2024-12-31	2021-09-27	3.88	4.26	—	3.9	0.008	1.11	0.0	0.07	17.37	0.01	1.959	10.29	0.97	11.3	88.5	0.2	-5.17	0.80	0.82	1.47	3.9	0.004	0.81	0.0	0.05	15.58	0.00	2.361	12.49	3.50	12.9	86.9	0.2	-2.46	1.17	0.80	0.83	0.97	14703	1770	21	0	60	0	0	logfile
✔	7SCC	25033	2024-12-26	2021-09-27	2.6	3.65	2.74	3.1	0.004	0.69	0.0	0.04	13.19	0.01	2.056	38.58	0.05	3.0	96.9	0.1	1.31	0.83	0.82	1.50	3.1	0.004	0.79	0.0	0.04	15.88	0.00	2.203	12.71	1.88	3.4	96.5	0.1	1.07	0.51	0.84	0.85	1.27	42904	5474	62	0	26	0	0	logfile
✔	7PTV	13641	2024-12-29	2021-09-27	3.3	3.13	2.96	3.1	0.008	0.80	0.0	0.05	14.24	0.01	2.259	8.31	2.05	8.4	91.6	0.0	-1.53	0.86	0.86	3.61	3.1	0.003	0.62	0.0	0.05	14.79	0.00	2.407	6.28	2.51	6.0	94.0	0.0	-0.61	1.15	0.87	0.89	3.24	9996	1290	4	0	2	0	0	logfile
✔	7ViG	32008	2024-12-28	2021-09-26	2.89	3.12	—	3.1	0.006	0.71	0.0	0.05	13.09	0.00	2.203	7.92	0.00	2.8	97.2	0.0	0.90	0.70	0.87	4.29	3.1	0.003	0.55	0.0	0.04	15.69	0.00	2.433	6.85	1.94	2.2	97.8	0.0	1.50	0.41	0.64	0.87	3.57	8920	1133	6	0	1	0	0	logfile
✔	7ViH	32009	2024-12-28	2021-09-26	2.98	3.27	—	3.2	0.006	0.80	2.0	0.16	14.00	0.01	2.205	10.49	0.61	2.8	97.1	0.1	0.70	0.63	0.83	3.87	3.2	0.003	0.58	0.0	0.04	15.81	0.00	2.486	6.84	2.35	3.2	96.8	0.0	0.93	1.91	0.64	0.85	3.64	8938	1136	6	0	1	0	0	logfile
✔	7PT7	13620	2024-12-31	2021-09-26	3.8	3.34	—	3.4	0.007	0.74	4.0	0.05	14.97	0.00	1.865	11.56	0.64	3.3	96.7	0.0	0.56	0.76	0.80	1.56	3.4	0.003	0.59	0.0	0.04	16.07	0.00	1.039	8.94	1.29	2.9	97.1	0.0	0.73	0.32	0.77	0.82	1.37	67420	8451	29	0	50	0	0	logfile
✔	7SC0	25007	2024-12-29	2021-09-26	3.4	3.72	—	3.8	0.003	0.52	0.0	0.04	10.01	0.00	2.479	1.29	0.00	7.9	92.1	0.0	-2.84	0.69	0.81	2.75	3.8	0.004	0.61	0.0	0.04	14.06	0.00	2.639	0.73	2.02	9.1	90.1	0.8	-0.76	1.49	0.67	0.82	2.18	11638	1419	11	0	0	0	0	logfile

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