Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SHM	25130	2024-12-28	2021-10-09	3.14	3.35	—	3.4	0.006	1.17	3.0	0.06	15.73	0.01	2.322	5.09	0.21	3.0	97.0	0.0	-6.33	0.64	0.82	2.64	3.4	0.003	0.66	0.0	0.04	16.82	0.00	2.543	7.59	1.77	3.1	96.9	0.0	0.82	0.62	0.61	0.84	2.67	9186	1142	4	0	2	0	0	logfile
✔	7SHL	25128	2024-12-28	2021-10-09	3.5	3.40	—	2.9	0.003	0.65	0.0	0.04	14.14	0.00	2.087	15.79	0.00	3.9	96.1	0.0	0.05	0.83	0.78	1.51	2.9	0.003	0.72	0.0	0.04	16.41	0.00	2.495	12.80	1.53	3.5	96.5	0.0	0.36	0.95	0.83	0.78	1.28	9207	1138	6	0	1	0	0	logfile
✔	7PY4	13711	2024-12-30	2021-10-08	3.1	3.52	3.18	3.5	0.004	0.59	0.0	0.05	14.52	0.00	1.650	4.90	0.08	3.1	96.9	0.0	0.83	0.65	0.82	3.46	3.5	0.003	0.54	0.0	0.04	14.83	0.00	2.054	4.14	1.19	2.9	97.1	0.0	1.09	0.75	0.66	0.84	2.42	11835	1439	5	0	11	0	0	logfile
✔	7PY2	13708	2024-12-27	2021-10-08	2.59	2.64	1.54	2.7	0.015	1.83	0.0	0.08	17.26	0.01	2.423	1.71	2.00	9.1	90.9	0.0	-5.22	0.45	0.84	6.05	2.8	0.004	0.84	0.0	0.04	17.95	0.00	2.471	2.93	6.00	5.2	94.8	0.0	-3.94	1.39	0.49	0.87	6.08	2152	316	4	0	0	0	0	logfile
✔	7PXA	13695	2024-12-27	2021-10-08	2.8	2.56	—	2.8	0.002	0.42	0.0	0.04	9.39	0.00	2.147	3.67	1.14	1.5	98.5	0.0	2.60	0.76	0.84	2.86	2.8	0.003	0.55	0.0	0.04	15.09	0.00	2.201	4.14	2.26	1.9	98.1	0.0	2.40	1.44	0.77	0.86	2.63	46614	6187	35	0	0	0	0	logfile
✔	7PX3	13690	2024-12-31	2021-10-07	3.05	3.64	—	3.3	0.003	0.52	0.0	0.04	11.55	0.00	2.241	7.26	5.20	2.4	97.6	0.0	1.05	0.90	0.88	2.96	3.3	0.006	0.67	0.0	0.05	13.86	0.00	2.343	7.96	2.19	2.8	97.1	0.0	0.97	1.88	0.91	0.90	2.77	16430	2041	3	0	0	0	0	logfile
✔	7SGL	25113	2024-12-26	2021-10-06	3.0	3.26	3.00	2.9	0.006	0.59	2.0	0.11	13.50	0.00	1.886	5.89	1.24	2.5	97.5	0.0	-1.62	0.82	0.78	2.24	3.0	0.003	0.59	0.0	0.04	15.08	0.00	2.006	5.90	1.26	3.0	97.0	0.0	0.82	1.29	0.86	0.88	2.35	44704	5396	9	62	6	0	0	logfile
✔	7SGF	25109	2024-12-30	2021-10-05	4.41	4.60	4.16	4.4	0.022	2.04	0.0	0.15	17.98	0.01	2.354	1.42	0.00	1.9	98.1	0.0	-0.03	0.77	0.70	—	4.4	0.007	1.07	0.0	0.05	12.85	0.01	2.320	21.74	0.00	10.3	89.7	0.0	-2.31	1.03	0.79	0.75	—	12078	1641	42	0	87	0	0	logfile
✔	7VLT	32026	2024-12-29	2021-10-05	3.1	3.37	3.11	3.4	0.004	0.60	0.0	0.04	13.02	0.00	1.963	3.24	2.19	1.9	98.1	0.0	0.12	0.67	0.83	2.64	3.4	0.003	0.54	0.0	0.04	15.23	0.00	1.957	6.16	2.82	1.1	98.9	0.0	2.56	1.36	0.66	0.83	2.02	9024	1145	2	0	6	0	0	logfile
✔	7VLS	32025	2024-12-29	2021-10-05	3.3	3.54	3.30	3.5	0.004	0.62	0.0	0.04	13.16	0.00	1.926	2.53	1.46	2.6	97.4	0.0	-0.24	0.69	0.84	2.33	3.5	0.003	0.57	0.0	0.04	16.07	0.00	1.966	4.85	2.92	1.6	98.4	0.0	2.56	1.49	0.64	0.83	1.81	9003	1141	2	0	6	0	0	logfile
✔	7SGD	25107	2024-12-28	2021-10-05	3.97	4.40	3.79	4.1	0.024	1.80	3.0	0.17	14.41	0.01	2.477	1.47	0.00	1.8	98.2	0.0	0.20	0.84	0.81	2.57	4.1	0.005	0.98	0.0	0.05	15.24	0.00	2.315	15.00	3.95	4.8	95.1	0.1	0.42	1.50	0.85	0.84	2.15	9120	1014	39	0	75	0	0	logfile
✔	7VLU	32027	2024-12-29	2021-10-05	3.3	3.71	3.36	3.6	0.004	0.63	0.0	0.04	13.04	0.00	1.978	3.76	1.96	2.5	97.5	0.0	-0.35	0.71	0.84	2.31	3.6	0.003	0.56	0.0	0.04	14.77	0.00	1.942	6.31	2.17	1.3	98.7	0.0	2.50	1.91	0.62	0.80	1.47	9110	1159	2	0	6	0	0	logfile
✔	7VLY	32031	2024-12-30	2021-10-05	2.45	2.52	—	2.5	0.002	0.61	0.0	0.04	17.02	0.01	2.232	6.18	2.49	4.0	96.0	0.0	1.19	0.72	0.85	2.83	2.5	0.003	0.60	0.0	0.04	16.23	0.01	2.405	5.26	1.90	5.0	95.0	0.0	1.88	0.90	0.74	0.88	2.71	13347	1773	18	0	3	30	0	logfile
✔	7VLR	32024	2024-12-29	2021-10-05	3.4	3.65	3.41	3.6	0.004	0.61	0.0	0.04	12.84	0.00	2.052	4.29	0.94	1.6	98.4	0.0	1.47	0.70	0.84	1.66	3.6	0.003	0.59	0.0	0.04	15.54	0.00	2.086	6.60	2.29	1.4	98.6	0.0	2.74	1.52	0.65	0.84	1.25	9003	1145	2	0	5	0	0	logfile
✔	7VLX	32030	2024-12-30	2021-10-05	3.12	3.24	—	3.1	0.003	0.70	0.0	0.04	13.74	0.01	2.134	12.56	0.00	6.9	92.9	0.2	-0.42	0.78	0.81	2.46	3.1	0.003	0.72	0.0	0.04	15.51	0.00	2.437	10.30	1.35	7.1	92.7	0.2	-0.18	1.18	0.78	0.82	1.90	12303	1635	9	0	3	0	0	logfile
✔	7SFL	25092	2024-12-30	2021-10-04	3.87	4.10	3.88	4.0	0.004	0.73	0.0	0.04	13.51	0.00	2.145	15.16	0.07	6.2	93.8	0.0	-0.26	0.66	0.76	1.54	4.0	0.003	0.77	0.0	0.05	15.93	0.00	2.277	14.02	2.94	5.8	94.2	0.0	-0.16	0.52	0.66	0.76	0.68	13014	1659	4	0	2	0	0	logfile
✔	7SFJ	25079	2024-12-28	2021-10-04	2.74	3.33	—	3.4	0.007	0.94	0.0	0.04	18.49	0.01	2.308	3.87	1.28	2.5	97.5	0.0	2.20	0.62	0.78	3.51	3.4	0.003	0.49	0.0	0.04	17.37	0.00	2.634	4.55	1.42	2.7	97.3	0.0	3.13	0.48	0.57	0.77	3.10	7377	852	9	0	24	3	0	logfile
✔	7SFK	25091	2024-12-28	2021-10-04	2.74	2.96	—	3.1	0.008	0.97	0.0	0.04	18.40	0.01	2.265	3.61	0.43	1.8	98.2	0.0	2.37	0.74	0.84	3.90	3.0	0.002	0.49	0.0	0.04	17.33	0.00	2.506	5.24	1.28	2.5	97.5	0.0	2.78	0.38	0.68	0.84	3.71	7419	852	9	0	24	57	0	logfile
✔	7SF8	25077	2024-12-27	2021-10-03	2.7	2.25	—	2.1	0.005	0.74	0.0	0.05	13.03	0.00	2.270	4.24	0.14	4.7	95.3	0.0	0.40	0.80	0.80	3.25	2.1	0.005	0.61	0.0	0.04	15.80	0.00	2.558	3.11	1.67	4.7	95.3	0.0	0.95	1.00	0.82	0.84	3.53	6661	860	4	0	0	0	0	logfile
✔	7SF7	25076	2024-12-27	2021-10-03	2.9	2.36	—	2.2	0.005	0.78	0.0	0.05	12.92	0.00	2.234	6.27	0.56	7.5	92.5	0.0	-1.73	0.75	0.74	2.07	2.1	0.003	0.62	0.0	0.04	15.62	0.00	2.499	5.08	2.68	6.8	93.2	0.0	-1.00	0.50	0.77	0.78	1.49	6776	879	5	0	0	3	0	logfile

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