Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SJ9	25159	2024-12-26	2021-10-16	3.8	3.88	—	3.5	0.003	0.67	1.0	0.05	13.67	0.01	2.061	14.41	0.13	3.4	96.5	0.0	0.10	0.65	0.84	2.50	3.5	0.004	0.75	0.0	0.05	17.49	0.00	1.892	13.24	4.17	3.1	96.9	0.0	0.72	1.51	0.67	0.86	2.62	43240	5446	26	0	24	0	0	logfile
✔	7SJ1	25152	2024-12-27	2021-10-15	2.9	3.13	—	3.3	0.011	1.01	0.0	0.04	16.62	0.00	2.351	8.63	0.61	2.1	97.9	0.0	2.80	0.58	0.77	3.41	3.3	0.003	0.61	0.0	0.04	16.23	0.01	2.607	9.98	1.67	0.5	99.5	0.0	3.47	1.08	0.50	0.78	2.07	6463	784	9	0	34	1	0	logfile
✔	7SJ0	25149	2024-12-27	2021-10-15	3.36	3.33	3.46	3.7	0.003	0.66	0.0	0.05	12.81	0.00	2.225	4.12	0.00	5.9	94.1	0.0	-1.98	0.69	0.79	3.48	3.7	0.005	0.82	0.0	0.05	15.70	0.00	2.415	5.68	3.08	6.4	93.6	0.0	-1.32	0.54	0.70	0.81	3.13	3590	452	4	0	5	0	0	logfile
✔	7SJ4	25153	2024-12-27	2021-10-15	2.86	3.15	—	3.2	0.002	0.43	0.0	0.04	9.56	0.00	2.278	3.47	0.93	1.3	98.7	0.0	0.95	0.62	0.72	3.73	3.2	0.003	0.62	0.0	0.04	14.90	0.00	2.478	5.40	2.78	1.9	98.1	0.0	1.37	0.62	0.60	0.71	2.59	3909	481	4	0	0	24	0	logfile
✔	7VoT	32059	2024-12-26	2021-10-14	2.9	3.04	—	3.0	0.006	0.80	0.0	0.04	15.28	0.01	2.147	9.03	0.37	1.5	98.5	0.0	2.64	0.76	0.82	4.12	3.0	0.004	0.74	0.0	0.04	17.93	0.00	2.197	13.00	2.26	1.7	98.3	0.0	2.09	1.19	0.77	0.85	3.28	44984	4594	128	0	152	0	0	logfile
✔	7SiL	25143	2024-12-30	2021-10-14	2.7	1.97	—	1.5	0.004	0.70	0.0	0.05	13.55	0.00	2.160	6.65	0.15	2.1	97.9	0.0	0.60	0.75	0.72	3.10	1.6	0.003	0.62	0.0	0.04	15.44	0.00	2.382	6.81	1.47	1.9	98.1	0.0	0.57	0.93	0.77	0.78	2.97	12924	1564	10	0	34	0	0	logfile
✔	7SiP	25147	2024-12-28	2021-10-14	3.0	3.27	—	3.3	0.011	1.17	0.0	0.04	17.47	0.01	2.313	3.17	0.00	0.9	99.1	0.0	0.93	0.63	0.81	2.85	3.3	0.002	0.50	0.0	0.04	15.61	0.00	2.596	2.46	2.27	1.3	98.7	0.0	1.79	0.99	0.58	0.81	2.63	7560	892	12	0	36	20	0	logfile
✔	7VoJ	32050	2024-12-27	2021-10-14	3.0	3.21	—	3.3	0.008	1.01	0.0	0.06	13.59	0.01	2.061	7.62	1.73	3.3	96.5	0.3	-2.46	0.65	0.83	2.35	3.3	0.003	0.62	0.0	0.04	16.28	0.00	1.887	5.26	0.86	1.9	98.1	0.0	3.47	2.14	0.61	0.82	1.66	6318	800	4	0	6	0	0	logfile
✔	7VoR	32058	2024-12-26	2021-10-14	2.74	2.87	—	2.8	0.007	0.96	0.0	0.04	15.58	0.00	2.138	8.41	0.37	1.8	98.2	0.0	2.88	0.76	0.85	3.78	2.8	0.004	0.66	0.0	0.04	17.16	0.00	2.362	9.83	1.86	1.6	98.4	0.0	2.67	0.44	0.75	0.87	3.52	44980	4614	128	0	148	0	0	logfile
✔	7SiM	25144	2024-12-30	2021-10-14	2.7	2.00	—	1.6	0.005	0.71	0.0	0.05	13.38	0.00	2.302	7.90	0.07	1.7	98.3	0.0	0.36	0.74	0.72	3.19	1.6	0.003	0.57	0.0	0.04	15.28	0.00	2.372	7.24	0.74	2.0	98.0	0.0	0.50	0.94	0.75	0.76	3.18	12826	1564	10	0	28	0	0	logfile
✔	7SiD	25141	2024-12-26	2021-10-13	2.53	2.17	—	2.7	0.003	0.53	0.0	0.04	14.38	0.01	2.072	4.12	0.77	1.7	98.3	0.0	2.49	0.61	0.61	1.83	2.2	0.004	0.63	0.0	0.04	16.64	0.00	2.289	5.19	1.35	2.4	97.6	0.0	2.00	1.98	0.71	0.78	2.13	44650	5566	6	0	4	0	0	logfile
✔	7SiC	25140	2024-12-26	2021-10-13	2.51	2.61	—	2.6	0.003	0.58	0.0	0.04	17.75	0.00	2.151	6.37	3.04	1.8	98.2	0.0	2.29	0.60	0.60	1.51	2.6	0.002	0.57	0.0	0.04	17.91	0.00	2.467	6.54	2.29	2.0	98.0	0.0	2.61	0.59	0.73	0.75	1.79	44484	5546	4	0	4	0	0	logfile
✔	7Vo9	32049	2024-12-27	2021-10-13	3.8	3.98	3.82	3.8	0.011	1.58	1.0	0.09	23.20	0.00	2.124	6.40	0.76	0.8	99.2	0.0	2.89	0.75	0.63	0.88	3.9	0.005	0.75	0.0	0.04	27.06	0.00	1.921	16.53	4.55	1.0	99.0	0.0	0.72	1.14	0.78	0.68	0.49	5711	524	10	86	12	0	0	logfile
✔	7Vo0	32048	2024-12-28	2021-10-12	3.4	3.66	3.41	3.5	0.004	0.57	0.0	0.04	21.17	0.00	1.938	7.44	0.17	1.8	98.2	0.0	0.39	0.73	0.66	1.10	3.6	0.003	0.59	0.0	0.04	22.76	0.00	1.940	8.00	2.38	2.5	97.5	0.0	1.23	1.39	0.83	0.82	1.26	7661	786	14	86	18	0	0	logfile
✔	7Si6	25138	2024-12-30	2021-10-12	3.32	3.28	—	3.3	0.003	1.22	0.0	0.04	13.58	0.00	2.044	4.51	0.00	1.4	98.6	0.0	2.88	0.46	0.77	1.67	3.3	0.002	0.85	0.0	0.04	15.00	0.00	1.922	3.03	0.69	2.3	97.7	0.0	2.65	0.41	0.50	0.82	1.77	13515	873	2	0	2	0	6910	logfile
✔	7Si7	25139	2024-12-29	2021-10-12	3.49	3.47	—	3.4	0.003	1.32	0.0	0.04	13.13	0.00	1.963	5.23	0.00	2.6	97.4	0.0	2.38	0.49	0.78	0.67	3.4	0.002	0.91	0.0	0.04	15.05	0.00	2.094	3.63	0.66	2.6	97.4	0.0	2.78	1.00	0.51	0.82	0.51	11287	728	2	0	2	0	5777	logfile
✔	7Si3	25137	2024-12-30	2021-10-12	3.19	3.21	—	3.2	0.003	1.19	0.0	0.04	13.00	0.00	2.038	2.15	0.00	1.5	98.5	0.0	3.72	0.48	0.77	1.74	3.1	0.003	0.86	0.0	0.04	14.73	0.00	1.950	2.82	0.69	1.9	98.1	0.0	2.73	0.95	0.50	0.81	2.16	13500	873	2	0	2	0	6901	logfile
✔	7VNR	32046	2024-12-31	2021-10-11	2.8	3.48	—	3.3	0.011	1.01	2.0	0.07	16.11	0.01	2.217	11.25	5.60	6.4	93.4	0.2	-1.01	0.50	0.53	2.33	3.2	0.005	1.06	0.0	0.05	17.45	0.01	2.416	15.25	1.93	4.9	95.0	0.1	0.78	1.98	0.56	0.81	1.84	15343	1896	12	0	7	0	0	logfile
✔	7SHS	25135	2024-12-27	2021-10-11	4.1	3.40	—	4.3	0.003	0.74	0.0	0.04	13.65	0.01	2.349	5.95	0.00	1.8	98.2	0.0	0.74	0.60	0.71	—	4.1	0.002	0.61	0.0	0.04	14.52	0.00	2.409	10.11	0.00	1.9	98.1	0.0	2.01	1.88	0.61	0.74	—	6873	849	3	0	0	0	0	logfile
✔	7VNQ	32045	2024-12-31	2021-10-11	2.96	3.80	—	3.5	0.010	1.02	0.0	0.06	15.83	0.01	2.207	12.52	6.90	5.7	93.9	0.4	-1.00	0.50	0.45	1.23	3.6	0.004	0.96	0.0	0.05	17.56	0.01	2.427	17.16	2.40	4.3	95.5	0.2	0.88	1.54	0.59	0.79	1.41	15507	1920	12	0	7	0	0	logfile

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