Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SL3	25190	2024-12-31	2021-10-22	3.4	3.65	—	3.5	0.002	0.54	0.0	0.04	13.25	0.00	2.238	8.44	0.32	6.4	93.4	0.2	-0.71	0.80	0.81	2.46	3.5	0.003	0.58	0.0	0.04	14.72	0.00	2.499	8.12	1.07	6.4	93.6	0.0	-0.92	1.16	0.81	0.84	2.46	14016	1736	6	0	0	0	0	logfile
✔	7VR1	32096	2024-12-29	2021-10-21	3.4	3.67	—	3.6	0.003	0.55	0.0	0.04	13.99	0.00	2.253	7.05	0.00	5.8	94.2	0.0	-0.76	0.68	0.84	1.98	3.6	0.003	0.61	0.0	0.04	15.80	0.00	2.538	5.90	1.09	5.7	94.3	0.0	0.64	0.37	0.69	0.85	1.36	9522	1196	2	0	0	0	0	logfile
✔	7VQX	32095	2024-12-28	2021-10-21	2.74	2.89	—	2.9	0.004	0.55	0.0	0.04	14.12	0.00	2.094	8.36	0.00	3.6	96.4	0.0	0.32	0.63	0.79	3.28	2.9	0.004	0.59	0.0	0.04	16.42	0.00	2.496	5.96	1.83	3.5	96.5	0.0	0.90	0.31	0.62	0.82	2.76	9049	1148	6	0	0	0	0	logfile
✔	7VQQ	32092	2024-12-27	2021-10-20	2.9	2.61	—	3.1	0.009	0.85	0.0	0.05	11.51	0.01	2.233	2.50	0.00	12.4	87.6	0.0	-6.09	0.47	0.86	4.62	3.1	0.004	0.71	0.0	0.04	12.43	0.00	2.570	1.11	2.28	3.4	96.6	0.0	-4.84	0.32	0.47	0.87	4.80	1968	273	3	0	0	0	0	logfile
✔	7VQ4	32085	2024-12-27	2021-10-19	3.2	3.54	—	3.6	0.007	0.74	0.0	0.04	16.10	0.00	2.155	9.59	2.30	6.6	93.4	0.0	-1.96	0.61	0.79	1.10	3.7	0.004	0.71	0.0	0.04	17.48	0.00	2.588	7.63	4.60	3.8	96.2	0.0	2.92	1.26	0.59	0.79	0.31	6306	800	2	0	0	0	0	logfile
✔	7VQ7	32087	2024-12-27	2021-10-19	3.6	3.68	—	3.7	0.007	0.75	0.0	0.04	16.81	0.00	2.070	11.39	4.87	3.9	96.1	0.0	-1.30	0.61	0.81	2.00	3.7	0.003	0.58	0.0	0.04	18.06	0.00	2.177	6.54	2.51	2.0	98.0	0.0	3.83	1.64	0.58	0.80	1.19	6127	778	3	0	1	0	0	logfile
✔	7SK0	25168	2024-12-27	2021-10-19	3.33	3.63	2.74	3.6	0.009	1.04	0.0	0.06	14.22	0.01	2.005	3.11	0.44	4.3	95.7	0.0	0.35	0.47	0.66	1.21	3.6	0.004	0.75	0.0	0.04	16.24	0.00	2.459	10.64	1.33	3.3	96.7	0.0	1.99	0.57	0.47	0.68	2.40	4168	514	4	0	7	0	0	logfile
✔	7VQ5	32086	2024-12-27	2021-10-19	3.1	3.31	—	3.3	0.009	0.77	0.0	0.05	14.85	0.00	2.110	7.38	0.14	7.4	92.6	0.0	-3.56	0.66	0.84	2.48	3.4	0.002	0.55	0.0	0.04	16.03	0.00	2.534	6.28	1.58	3.3	96.7	0.0	2.64	1.12	0.62	0.82	1.75	6315	800	3	0	1	0	0	logfile
✔	7SK2	25170	2024-12-27	2021-10-19	3.82	4.03	—	3.9	0.005	1.06	0.0	0.06	13.67	0.01	2.235	8.03	0.00	4.7	95.3	0.0	-2.59	0.49	0.69	1.11	3.9	0.003	0.81	0.0	0.04	16.13	0.00	2.619	15.82	3.52	4.5	95.5	0.0	-0.42	0.55	0.50	0.69	0.64	4177	532	2	0	1	0	0	logfile
✔	7SK1	25169	2024-12-27	2021-10-19	3.43	3.92	3.64	4.0	0.009	1.07	0.0	0.06	12.81	0.01	2.254	1.39	0.43	3.8	96.2	0.0	1.09	0.59	0.73	1.99	4.0	0.003	0.70	0.0	0.04	16.20	0.00	2.430	6.61	3.26	4.6	95.4	0.0	1.73	0.58	0.57	0.72	1.24	4291	524	4	0	7	0	0	logfile
✔	7VQ3	32084	2024-12-27	2021-10-19	3.2	3.40	—	3.4	0.005	0.55	0.0	0.04	14.66	0.00	2.061	5.90	0.00	6.6	93.4	0.0	-0.93	0.65	0.83	2.45	3.4	0.003	0.56	0.0	0.04	16.73	0.00	2.561	4.95	2.59	3.3	96.7	0.0	3.11	0.54	0.63	0.83	1.84	6306	800	2	0	0	0	0	logfile
✔	7SK3	25171	2024-12-30	2021-10-19	3.8	4.06	—	4.0	0.005	0.68	0.0	0.07	13.11	0.00	2.143	5.05	0.00	5.0	95.0	0.0	0.15	0.69	0.82	2.20	4.0	0.003	0.52	0.0	0.04	13.89	0.00	2.354	5.71	1.92	4.5	95.5	0.0	0.15	0.40	0.70	0.82	1.91	13294	831	7	0	8	0	6491	logfile
✔	7SK8	25176	2024-12-30	2021-10-19	3.3	3.55	—	3.5	0.007	0.73	0.0	0.06	15.20	0.00	2.265	2.62	0.00	5.2	94.8	0.0	-0.08	0.70	0.83	3.30	3.5	0.003	0.51	0.0	0.04	14.26	0.00	2.423	3.93	0.82	4.4	95.6	0.0	0.07	0.30	0.68	0.83	2.85	13389	835	7	0	8	0	6513	logfile
✔	7SK9	25177	2024-12-29	2021-10-19	3.7	4.01	—	3.9	0.005	0.62	0.0	0.05	15.65	0.00	2.028	4.76	0.00	4.4	95.6	0.0	1.15	0.71	0.81	1.92	3.9	0.003	0.53	0.0	0.04	14.43	0.00	2.362	4.49	1.26	5.1	94.9	0.0	1.18	0.40	0.70	0.81	1.92	11261	716	4	0	3	0	5561	logfile
✔	7SK7	25175	2024-12-30	2021-10-19	3.3	3.48	—	3.4	0.004	0.57	0.0	0.05	14.16	0.00	2.002	4.59	0.00	3.6	96.4	0.0	-0.04	0.68	0.80	3.12	3.4	0.003	0.53	0.0	0.04	15.62	0.00	2.356	4.22	0.66	3.0	97.0	0.0	0.39	0.41	0.67	0.80	2.91	13455	854	6	0	2	0	6650	logfile
✔	7SK5	25173	2024-12-31	2021-10-19	4.0	4.30	—	4.2	0.004	0.63	0.0	0.06	13.45	0.00	1.998	6.42	0.00	4.7	95.3	0.0	0.50	0.69	0.81	—	4.2	0.019	0.87	0.0	0.04	14.91	0.01	2.352	7.53	1.64	4.6	95.4	0.0	0.18	0.47	0.69	0.80	—	14160	897	7	0	7	0	6928	logfile
✔	7SK6	25174	2024-12-28	2021-10-19	4.0	4.42	—	4.1	0.018	1.92	2.0	0.11	13.16	0.01	2.462	0.11	0.76	4.2	94.0	1.8	0.35	0.52	0.52	—	4.1	0.003	0.59	0.0	0.04	14.75	0.00	2.465	11.45	1.14	4.6	95.4	0.0	0.53	1.46	0.64	0.71	—	9144	585	4	0	0	0	4462	logfile
✔	7SK4	25172	2024-12-30	2021-10-19	3.3	3.73	—	3.6	0.003	0.50	0.0	0.05	14.27	0.00	2.086	5.89	0.00	5.6	94.4	0.0	-0.26	0.68	0.79	1.76	3.6	0.003	0.54	0.0	0.04	15.39	0.00	2.279	5.44	0.96	4.7	95.3	0.0	-0.07	0.32	0.68	0.80	1.73	13145	831	7	0	2	0	6489	logfile
✔	7VPX	32074	2024-12-26	2021-10-18	3.0	3.28	—	3.1	0.009	1.29	28.0	0.17	19.77	0.01	1.018	18.59	7.75	3.5	96.2	0.3	-2.52	0.44	0.36	1.22	3.2	0.003	0.76	0.0	0.05	19.12	0.00	2.293	8.17	2.52	4.2	95.8	0.0	0.40	0.92	0.58	0.62	1.40	43240	5611	39	319	7	0	0	logfile
✔	7SJR	25164	2024-12-30	2021-10-18	3.8	3.91	—	3.8	0.005	0.79	0.0	0.04	17.63	0.01	1.895	13.38	0.08	8.9	91.1	0.0	-1.61	0.77	0.83	1.72	3.8	0.003	0.64	0.0	0.04	18.92	0.00	2.023	8.06	2.73	6.6	93.4	0.0	-0.23	1.13	0.76	0.83	0.88	13696	1713	4	35	3	0	0	logfile

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