Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SoC	25266	2024-12-27	2021-10-29	3.3	3.48	3.25	3.5	0.011	1.22	0.0	0.07	13.13	0.00	2.526	0.89	0.00	1.9	98.1	0.0	0.30	0.70	0.86	4.49	3.5	0.004	0.58	0.0	0.04	12.87	0.00	2.609	3.12	2.20	2.1	97.9	0.0	-0.15	0.51	0.70	0.91	3.69	3448	433	5	0	7	0	0	logfile
✔	7SoF	25269	2024-12-27	2021-10-29	3.6	3.79	3.59	3.8	0.010	1.31	1.0	0.08	11.42	0.01	2.563	1.12	0.00	3.4	96.6	0.0	0.64	0.67	0.78	4.10	3.8	0.003	0.67	0.0	0.05	12.86	0.00	2.420	3.92	4.12	2.7	97.3	0.0	-0.10	1.38	0.69	0.82	4.07	3735	488	5	0	9	0	0	logfile
✔	7SoA	25264	2024-12-27	2021-10-29	3.1	3.33	3.14	3.3	0.011	1.27	0.0	0.08	10.15	0.01	2.194	1.06	0.24	2.0	98.0	0.0	0.99	0.68	0.84	4.69	3.3	0.003	0.57	0.0	0.04	13.35	0.00	2.598	2.52	3.16	2.2	97.8	0.0	1.10	0.57	0.67	0.90	5.09	3850	477	5	0	6	0	0	logfile
✔	7Q49	13799	2024-12-29	2021-10-29	3.72	4.35	3.97	4.2	0.008	1.08	0.0	0.06	19.17	0.01	1.995	6.54	0.19	2.9	97.1	0.0	-1.50	0.67	0.70	2.02	4.2	0.003	0.61	0.0	0.04	14.87	0.00	1.949	6.25	1.32	2.6	97.4	0.0	1.32	0.85	0.66	0.68	1.32	10124	616	8	0	26	1	4788	logfile
✔	7SoD	25267	2024-12-27	2021-10-29	3.2	3.43	3.21	3.4	0.011	1.24	0.0	0.08	9.17	0.01	2.129	0.40	0.49	2.4	97.6	0.0	1.01	0.70	0.86	5.20	3.4	0.004	0.57	0.0	0.04	12.40	0.00	2.534	2.40	0.25	3.3	96.7	0.0	0.91	1.53	0.68	0.90	5.46	3830	473	5	0	7	0	0	logfile
✔	7SNH	25226	2024-12-31	2021-10-28	2.2	2.26	—	2.2	0.006	0.75	0.0	0.05	20.23	0.01	2.213	6.69	1.32	1.7	98.3	0.0	0.45	0.76	0.86	4.93	2.2	0.004	0.60	0.0	0.04	18.75	0.01	2.442	5.32	1.32	1.5	98.5	0.0	0.54	0.39	0.77	0.89	4.86	15828	1904	8	0	8	0	0	logfile
✔	7SNG	25225	2024-12-31	2021-10-28	2.8	3.04	—	3.0	0.004	0.63	2.0	0.04	14.54	0.01	2.201	10.64	0.25	3.3	96.5	0.2	-0.68	0.74	0.85	4.43	3.0	0.003	0.58	0.0	0.04	17.06	0.00	2.525	8.24	1.04	3.0	96.9	0.1	0.13	0.38	0.77	0.88	3.75	15204	1868	8	0	0	104	0	logfile
✔	7Q3U	13795	2024-12-27	2021-10-28	3.7	3.43	3.48	4.1	0.005	1.17	0.0	0.05	16.84	0.01	2.120	36.48	0.00	10.7	89.3	0.0	-5.79	0.23	0.47	0.88	4.0	0.004	0.89	0.0	0.04	18.73	0.00	2.527	16.46	2.38	10.7	89.3	0.0	-5.99	2.23	0.33	0.60	3.26	2355	355	5	0	0	0	0	logfile
✔	7SN8	25214	2024-12-30	2021-10-27	2.74	2.78	—	2.9	0.006	0.91	1.0	0.06	14.48	0.01	2.204	6.21	0.28	8.9	91.1	0.0	-1.56	0.70	0.80	2.97	2.9	0.003	0.63	0.0	0.04	16.43	0.00	2.425	6.79	2.03	7.7	92.3	0.0	-0.05	0.37	0.71	0.82	2.52	12860	1621	5	0	3	0	0	logfile
✔	7VT0	32117	2024-12-29	2021-10-27	3.4	3.53	—	3.5	0.011	1.31	16.0	0.06	14.91	0.01	2.126	14.86	3.65	14.3	82.6	3.1	-4.14	0.68	0.76	3.22	3.5	0.005	0.81	0.0	0.05	16.05	0.00	2.463	9.24	2.61	14.4	84.7	0.9	-3.24	1.61	0.69	0.78	2.81	10536	1326	2	0	0	0	0	logfile
✔	7SN2	25209	2024-12-29	2021-10-27	4.3	3.73	—	3.7	0.007	1.31	1.0	0.07	17.66	0.01	1.905	8.33	0.00	0.8	98.9	0.3	-1.92	0.54	0.70	—	3.6	0.003	0.72	0.0	0.05	14.00	0.01	2.328	8.92	0.00	8.3	91.7	0.0	-1.64	0.53	0.54	0.70	—	10092	650	5	0	10	0	4904	logfile
✔	7VSR	32114	2024-12-31	2021-10-27	4.5	4.64	4.47	3.4	0.005	0.72	0.0	0.04	13.56	0.01	1.817	11.43	1.90	3.0	97.0	0.0	-0.26	0.77	0.55	—	3.4	0.004	0.68	0.0	0.04	13.18	0.01	1.736	13.44	0.03	6.4	93.6	0.0	-0.71	2.68	0.88	0.78	—	66142	4040	20	0	12	0	32736	logfile
✔	7Q2Q	13780	2024-12-30	2021-10-26	4.3	3.37	—	3.6	0.010	1.40	0.0	0.08	12.77	0.01	1.166	18.08	0.00	8.5	90.7	0.7	-4.23	0.58	0.71	—	3.3	0.004	0.71	0.0	0.04	15.38	0.01	2.205	10.23	0.24	4.7	95.3	0.0	-1.69	1.10	0.60	0.75	—	62377	7497	98	147	0	0	0	logfile
✔	7Q2Z	13786	2024-12-28	2021-10-26	3.2	2.91	3.15	3.2	0.002	0.48	0.0	0.03	18.98	0.00	2.227	4.26	0.00	6.5	93.4	0.1	-1.44	0.67	0.80	2.05	3.2	0.004	0.59	0.0	0.04	19.99	0.00	2.557	2.78	1.46	3.3	96.6	0.1	1.62	1.22	0.71	0.86	2.46	8258	902	4	46	0	0	0	logfile
✔	7Q2S	13782	2024-12-30	2021-10-26	3.7	3.23	—	3.3	0.010	1.40	0.0	0.08	12.76	0.01	1.216	18.47	0.00	8.6	90.7	0.7	-4.24	0.45	0.63	1.80	3.2	0.004	0.81	0.0	0.04	18.20	0.00	2.136	14.10	5.41	4.3	95.7	0.0	-2.43	1.53	0.52	0.68	1.78	62377	7497	98	147	0	0	0	logfile
✔	7SLP	25197	2024-12-27	2021-10-24	4.1	4.19	—	4.2	0.008	1.22	1.0	0.07	19.40	0.01	2.221	7.09	1.77	4.2	95.3	0.5	-3.76	0.62	0.56	—	4.1	0.003	0.67	0.0	0.04	18.02	0.01	2.513	9.62	0.22	4.6	95.4	0.0	-0.09	1.44	0.71	0.71	—	5176	561	4	37	0	0	0	logfile
✔	7SL9	25195	2024-12-27	2021-10-23	3.5	3.79	—	3.7	0.005	0.95	0.0	0.06	13.95	0.01	2.259	4.68	0.40	5.9	94.1	0.0	-6.01	0.64	0.82	2.99	3.7	0.004	0.83	0.0	0.04	15.49	0.00	2.513	9.57	4.25	5.9	94.1	0.0	-1.47	1.63	0.65	0.83	1.47	4712	619	3	0	1	0	0	logfile
✔	7SL8	25194	2024-12-27	2021-10-23	3.4	3.98	—	3.9	0.005	0.97	0.0	0.06	14.66	0.01	2.316	8.99	0.92	8.1	91.9	0.0	-4.09	0.62	0.80	1.65	3.9	0.003	0.75	0.0	0.04	16.11	0.00	2.417	10.13	5.55	6.8	93.2	0.0	0.41	0.55	0.61	0.80	1.14	5295	700	3	0	1	0	0	logfile
✔	7SLA	25196	2024-12-27	2021-10-23	3.15	3.74	—	3.7	0.009	1.01	2.0	0.07	13.72	0.01	2.210	3.63	1.74	6.8	93.2	0.0	-4.25	0.59	0.79	1.94	3.6	0.003	0.61	0.0	0.04	14.91	0.00	2.514	2.27	2.60	4.5	95.5	0.0	0.23	0.65	0.54	0.80	2.00	5458	702	3	0	1	0	0	logfile
✔	7SL6	25192	2024-12-31	2021-10-22	3.7	3.77	—	3.5	0.003	0.55	0.0	0.04	13.38	0.00	2.201	10.19	0.25	6.5	93.3	0.2	-0.68	0.81	0.81	2.33	3.5	0.004	0.60	0.0	0.04	14.78	0.00	2.568	9.54	1.14	7.5	92.5	0.1	-0.70	1.15	0.81	0.83	2.40	14004	1734	6	0	0	0	0	logfile

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