Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SQ8	25379	2024-12-31	2021-11-04	2.598	2.10	—	2.5	0.004	0.55	0.0	0.04	13.32	0.00	2.199	3.68	0.00	3.3	96.7	0.0	1.93	0.64	0.86	4.26	2.4	0.005	0.61	0.0	0.04	15.15	0.00	2.312	4.20	1.51	3.2	96.8	0.0	2.23	0.33	0.64	0.88	4.34	15117	1852	13	0	9	8	0	logfile
✔	7VV4	32137	2024-12-27	2021-11-04	2.97	3.66	—	3.7	0.007	1.20	2.0	0.09	14.73	0.01	1.600	15.98	3.75	4.2	95.8	0.0	-0.53	0.64	0.78	2.05	3.7	0.003	0.72	0.0	0.05	17.10	0.00	2.576	9.23	4.17	2.6	97.0	0.4	2.20	0.54	0.59	0.77	0.88	2181	269	3	0	1	0	0	logfile
✔	7VV5	32138	2024-12-28	2021-11-04	2.76	2.94	—	2.8	0.012	1.17	0.0	0.07	18.05	0.01	2.236	4.22	10.86	3.8	96.2	0.0	-2.82	0.77	0.86	3.43	2.8	0.003	0.67	0.0	0.04	17.58	0.00	2.423	8.04	3.24	2.2	97.8	0.0	1.15	1.20	0.75	0.87	3.28	8829	1122	6	0	2	0	0	logfile
✔	7VV3	32136	2024-12-28	2021-11-04	2.97	3.10	—	3.0	0.009	1.26	0.0	0.07	13.10	0.01	1.600	7.63	0.75	3.3	96.7	0.0	-1.72	0.73	0.85	3.32	3.1	0.003	0.76	0.0	0.04	16.59	0.00	2.496	8.45	2.56	2.3	97.7	0.0	0.92	0.53	0.73	0.86	2.69	8633	1105	6	0	1	0	0	logfile
✔	7VUZ	32132	2024-12-28	2021-11-04	2.89	3.37	—	3.3	0.010	1.40	3.0	0.08	13.54	0.01	2.035	6.79	1.39	5.3	94.7	0.0	-2.89	0.61	0.74	2.31	3.3	0.004	0.80	0.0	0.05	16.74	0.00	2.459	13.82	3.63	5.6	94.4	0.0	-0.37	1.31	0.59	0.74	1.47	8584	1097	6	0	1	0	0	logfile
✔	7VV6	32139	2024-12-27	2021-11-04	3.3	3.47	—	3.5	0.010	1.38	0.0	0.07	19.05	0.01	2.291	4.89	10.37	5.2	94.8	0.0	-4.22	0.62	0.83	1.64	3.4	0.003	0.63	0.0	0.04	16.64	0.00	2.584	4.66	2.49	3.3	96.7	0.0	2.83	0.66	0.63	0.85	1.69	2227	271	2	0	2	0	0	logfile
✔	7Q5A	13830	2024-12-30	2021-11-03	2.46	2.69	—	2.6	0.012	1.12	0.0	0.06	9.68	0.00	2.247	3.06	0.00	0.0	100.0	0.0	0.99	0.66	0.84	6.72	2.6	0.052	2.81	43.0	0.20	16.17	0.01	1.689	7.36	6.67	0.0	100.0	0.0	1.18	1.63	0.68	0.87	6.16	61600	5600	2400	0	1600	0	0	logfile
✔	7Q59	13829	2024-12-27	2021-11-03	4.36	4.89	—	4.4	0.003	0.63	0.0	0.04	10.22	0.00	1.925	6.09	0.72	3.6	96.4	0.0	-0.17	0.79	0.65	—	4.4	0.003	0.67	0.0	0.04	11.86	0.00	2.073	9.38	0.00	2.9	97.1	0.0	0.01	1.42	0.89	0.83	—	47632	6118	14	0	6	0	0	logfile
✔	7SP7	25367	2024-12-28	2021-11-02	3.1	3.61	—	3.5	0.008	0.68	0.0	0.05	14.83	0.00	2.219	3.57	0.00	1.4	98.6	0.0	2.52	0.60	0.73	1.83	3.5	0.002	0.48	0.0	0.04	15.58	0.00	2.329	3.74	1.43	1.6	98.4	0.0	1.78	0.55	0.66	0.81	2.66	6052	739	4	1	4	0	0	logfile
✔	7SP8	25368	2024-12-28	2021-11-02	2.7	2.98	—	2.9	0.008	0.77	0.0	0.05	14.94	0.00	2.204	5.45	0.16	1.5	98.5	0.0	2.53	0.72	0.82	2.37	2.9	0.004	1.04	0.0	0.04	16.78	0.00	1.371	7.68	2.37	1.5	98.5	0.0	1.63	0.59	0.75	0.88	3.58	6090	742	4	0	5	0	0	logfile
✔	7SP9	25369	2024-12-28	2021-11-02	2.9	3.20	—	3.1	0.004	0.57	0.0	0.05	12.07	0.00	2.245	5.66	0.00	1.2	98.8	0.0	1.62	0.71	0.78	2.80	3.1	0.003	0.62	0.0	0.04	15.27	0.00	2.416	7.94	1.91	2.1	97.8	0.1	1.03	0.66	0.73	0.85	3.46	5966	737	4	0	2	0	0	logfile
✔	7VUi	32129	2024-12-28	2021-11-02	3.3	2.40	—	3.2	0.003	0.63	0.0	0.04	14.88	0.00	2.165	10.92	0.00	4.1	95.8	0.1	-0.34	0.73	0.71	1.24	2.2	0.003	0.66	0.0	0.04	16.82	0.00	2.275	8.62	3.46	3.5	96.3	0.2	0.03	0.40	0.75	0.76	1.74	8287	1034	7	0	3	0	0	logfile
✔	7VUH	32128	2024-12-28	2021-11-02	3.22	2.19	—	1.9	0.004	0.66	0.0	0.04	13.68	0.00	2.099	13.73	0.00	6.2	93.8	0.0	-1.87	0.71	0.69	2.81	1.9	0.004	0.66	0.0	0.04	15.93	0.00	2.505	11.61	3.10	6.2	93.8	0.0	-1.15	0.38	0.71	0.73	2.36	8302	1042	6	0	1	0	0	logfile
✔	7SP6	25366	2024-12-28	2021-11-02	3.1	3.58	—	3.5	0.004	0.58	0.0	0.04	14.43	0.00	2.308	5.40	0.00	1.5	98.5	0.0	1.72	0.61	0.75	1.78	3.5	0.003	0.59	0.0	0.04	16.33	0.00	2.407	5.82	2.88	2.9	97.1	0.0	0.99	1.26	0.64	0.82	2.62	5957	733	5	0	3	0	0	logfile
✔	7SP1	25364	2024-12-27	2021-11-02	3.4	3.65	—	3.9	0.006	1.29	0.0	0.07	19.39	0.01	2.288	11.67	0.00	2.9	97.1	0.0	-2.42	0.41	0.72	4.86	4.1	0.005	0.87	0.0	0.05	19.67	0.01	2.564	17.98	5.05	16.1	83.9	0.0	-3.77	1.67	0.40	0.75	4.64	4343	540	17	20	0	0	0	logfile
✔	7SPA	25370	2024-12-28	2021-11-02	2.8	3.04	—	2.9	0.004	0.57	0.0	0.05	12.25	0.00	2.275	6.27	0.00	1.4	98.6	0.0	1.68	0.71	0.77	2.48	2.9	0.005	1.05	1.0	0.05	15.52	0.00	2.228	8.10	1.75	2.6	97.2	0.1	1.26	1.29	0.75	0.86	4.14	6017	737	4	0	3	0	0	logfile
✔	7VU8	32126	2024-12-27	2021-11-01	3.0	4.24	3.77	4.4	0.009	1.19	0.0	0.07	16.69	0.01	2.308	9.19	4.64	9.5	90.5	0.0	-5.27	0.39	0.75	3.88	4.3	0.002	0.61	0.0	0.04	19.61	0.01	2.570	3.89	5.30	4.2	95.8	0.0	-1.59	1.14	0.39	0.76	2.75	1433	170	2	0	1	0	0	logfile
✔	7SoY	25363	2024-12-30	2021-11-01	3.4	4.73	—	3.7	0.003	0.63	0.0	0.04	12.63	0.00	2.231	12.96	0.37	1.7	98.3	0.0	1.32	0.90	0.83	0.53	3.7	0.003	0.64	0.0	0.04	14.38	0.00	2.562	12.09	1.04	1.9	98.1	0.0	1.49	0.66	0.91	0.85	0.52	12180	1529	4	0	0	0	0	logfile
✔	7Q4C	13801	2024-12-29	2021-10-30	4.08	4.49	4.12	4.4	0.007	0.92	0.0	0.05	14.78	0.01	2.077	6.86	0.00	3.3	96.7	0.0	-1.44	0.71	0.75	—	4.4	0.004	0.65	0.0	0.04	14.47	0.00	2.364	6.34	0.00	3.1	96.9	0.0	1.37	0.92	0.68	0.73	—	9503	585	5	0	11	0	4598	logfile
✔	7Q4E	13804	2024-12-29	2021-10-30	3.63	3.95	3.60	3.8	0.008	0.99	0.0	0.06	19.12	0.01	1.857	5.12	0.00	2.5	97.5	0.0	-1.91	0.70	0.77	3.06	3.8	0.003	0.60	0.0	0.03	14.55	0.00	1.927	7.92	1.53	3.1	96.9	0.0	1.22	1.51	0.69	0.78	2.13	10049	608	9	0	29	0	4731	logfile

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