Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SQV	25396	2024-12-27	2021-11-06	2.3	2.95	2.29	2.8	0.001	0.38	0.0	0.04	16.08	0.00	2.314	1.47	0.63	0.7	99.3	0.0	1.86	0.76	0.88	3.59	2.8	0.003	0.46	0.0	0.04	16.27	0.00	2.607	0.79	1.46	1.1	98.9	0.0	1.77	1.99	0.77	0.90	3.57	4471	573	5	0	0	7	0	logfile
✔	7VVJ	32141	2024-12-28	2021-11-06	3.2	2.96	3.17	3.2	0.015	1.78	1.0	0.09	14.24	0.01	2.205	6.85	1.77	5.4	94.5	0.1	-1.52	0.60	0.76	3.90	3.2	0.003	0.58	0.0	0.04	16.02	0.00	2.471	5.93	2.54	3.5	96.5	0.0	0.93	0.51	0.71	0.82	2.51	8872	1154	6	0	0	0	0	logfile
✔	7VVL	32143	2024-12-28	2021-11-06	2.8	2.24	2.76	2.9	0.014	1.69	0.0	0.09	17.70	0.00	2.204	4.33	7.24	4.3	95.7	0.1	-0.88	0.59	0.76	3.21	3.0	0.002	0.55	0.0	0.04	18.02	0.00	2.576	4.86	3.67	3.0	97.0	0.0	0.93	0.47	0.62	0.77	2.40	8725	1126	7	0	0	1	0	logfile
✔	7VVM	32144	2024-12-28	2021-11-06	3.2	2.40	3.19	3.2	0.015	1.76	0.0	0.09	13.51	0.00	2.200	6.43	0.60	5.2	94.8	0.0	-1.17	0.60	0.71	2.55	3.2	0.003	0.56	0.0	0.04	16.21	0.00	2.551	7.58	2.74	3.8	96.2	0.0	0.61	0.56	0.65	0.73	2.32	8507	1133	6	0	0	0	0	logfile
✔	7SQS	25392	2024-12-27	2021-11-06	3.1	3.86	2.91	3.6	0.002	0.47	0.0	0.04	13.61	0.00	2.317	3.59	0.22	2.9	97.1	0.0	1.01	0.76	0.84	2.45	3.6	0.003	0.53	0.0	0.04	14.98	0.00	2.467	1.74	1.51	3.5	96.5	0.0	1.05	0.33	0.77	0.86	2.73	4376	560	5	0	0	0	0	logfile
✔	7Q60	13848	2024-12-29	2021-11-05	3.13	3.73	—	3.4	0.007	1.26	1.0	0.07	15.64	0.01	2.271	5.00	0.57	5.2	94.8	0.1	-2.64	0.77	0.74	1.79	3.4	0.003	0.70	0.0	0.04	15.88	0.00	2.458	8.83	3.04	4.6	95.3	0.1	-0.94	0.41	0.77	0.75	1.71	9450	1212	1	0	0	0	0	logfile
✔	7Q66	13853	2024-12-27	2021-11-05	2.79	2.87	2.63	2.9	0.021	1.42	0.0	0.11	12.58	0.01	2.277	13.59	6.52	0.0	100.0	0.0	-4.18	0.63	0.84	3.82	2.9	0.004	0.77	0.0	0.05	16.37	0.00	2.516	11.85	11.07	0.3	99.7	0.0	-4.14	0.68	0.62	0.88	4.12	4807	682	22	0	0	0	0	logfile
✔	7Q67	13854	2024-12-27	2021-11-05	3.37	3.41	2.44	3.4	0.020	2.21	0.0	0.14	14.47	0.01	2.280	12.16	8.00	16.1	83.9	0.0	-4.98	0.51	0.71	2.52	3.5	0.005	0.99	0.0	0.05	19.12	0.00	2.468	19.94	12.36	18.2	81.8	0.0	-4.80	2.51	0.45	0.70	0.65	2618	363	11	0	0	0	0	logfile
✔	7SQF	25383	2024-12-27	2021-11-05	3.1	2.70	—	3.2	0.005	0.60	0.0	0.05	13.84	0.00	2.409	5.35	0.00	3.0	97.0	0.0	1.39	0.81	0.75	2.77	3.1	0.003	0.59	0.0	0.05	16.52	0.00	2.414	7.72	2.21	2.8	97.2	0.0	1.10	1.06	0.82	0.81	2.47	6630	819	6	0	12	0	0	logfile
✔	7SQH	25385	2024-12-27	2021-11-05	2.5	2.77	—	3.0	0.006	0.74	0.0	0.05	19.41	0.00	2.257	3.85	0.00	2.4	97.6	0.0	1.93	0.85	0.83	3.23	3.0	0.004	0.65	0.0	0.05	17.07	0.00	2.605	4.72	2.21	3.2	96.8	0.0	1.80	0.63	0.87	0.87	3.12	6954	849	9	0	12	21	0	logfile
✔	7SQG	25384	2024-12-27	2021-11-05	2.6	2.14	—	1.9	0.004	0.60	0.0	0.05	17.27	0.00	2.423	3.35	0.00	3.0	97.0	0.0	1.39	0.75	0.77	3.39	1.8	0.005	0.60	0.0	0.04	16.73	0.00	2.554	5.95	1.59	3.9	96.1	0.0	1.56	1.25	0.81	0.83	3.41	6630	810	6	0	12	0	0	logfile
✔	7Q65	13852	2024-12-27	2021-11-05	3.32	2.96	3.26	3.3	0.016	1.56	0.0	0.10	10.10	0.01	2.159	3.45	8.33	10.5	89.5	0.0	-5.74	0.64	0.85	4.16	3.3	0.004	0.67	0.0	0.03	13.35	0.00	2.571	10.69	7.58	7.9	92.1	0.0	-5.24	0.68	0.57	0.84	4.51	6204	880	22	0	0	0	0	logfile
✔	7Q62	13850	2024-12-31	2021-11-05	3.18	3.86	3.24	3.6	0.006	1.13	0.0	0.07	14.48	0.01	2.276	4.86	0.06	4.7	95.2	0.1	-1.75	0.80	0.78	2.10	3.6	0.003	0.68	0.0	0.05	15.51	0.00	2.507	9.75	1.79	5.2	94.7	0.0	-0.32	0.45	0.81	0.81	2.26	16186	2045	4	0	10	0	0	logfile
✔	7Q64	13851	2024-12-28	2021-11-05	2.76	2.81	2.66	2.9	0.014	1.34	0.0	0.09	10.20	0.01	2.276	7.23	3.83	8.3	91.7	0.0	-6.01	0.58	0.78	3.39	2.8	0.004	0.72	0.0	0.04	14.44	0.00	2.569	11.79	4.94	5.5	94.5	0.0	-5.69	0.75	0.59	0.86	3.64	7810	1100	30	0	0	0	0	logfile
✔	7Q5Z	13847	2024-12-29	2021-11-05	3.25	3.74	—	3.3	0.005	1.00	1.0	0.06	12.76	0.01	1.750	5.22	0.09	6.2	93.6	0.2	-2.07	0.80	0.69	1.18	3.4	0.003	0.66	0.0	0.04	14.14	0.00	2.492	10.78	1.79	5.6	94.4	0.1	-0.57	1.18	0.81	0.73	1.23	10489	1344	1	0	0	0	0	logfile
✔	7VUZ	32132	2024-12-28	2021-11-04	2.89	3.37	—	3.3	0.010	1.40	3.0	0.08	13.54	0.01	2.035	6.79	1.39	5.3	94.7	0.0	-2.89	0.61	0.74	2.31	3.3	0.004	0.80	0.0	0.05	16.74	0.00	2.459	13.82	3.63	5.6	94.4	0.0	-0.37	1.31	0.59	0.74	1.47	8584	1097	6	0	1	0	0	logfile
✔	7SQ8	25379	2024-12-31	2021-11-04	2.598	2.10	—	2.5	0.004	0.55	0.0	0.04	13.32	0.00	2.199	3.68	0.00	3.3	96.7	0.0	1.93	0.64	0.86	4.26	2.4	0.005	0.61	0.0	0.04	15.15	0.00	2.312	4.20	1.51	3.2	96.8	0.0	2.23	0.33	0.64	0.88	4.34	15117	1852	13	0	9	8	0	logfile
✔	7VUY	32131	2024-12-28	2021-11-04	2.84	3.26	—	3.2	0.010	1.12	0.0	0.07	13.83	0.01	1.806	6.64	0.42	4.5	95.5	0.0	-1.74	0.62	0.81	3.16	3.2	0.003	0.72	0.0	0.04	16.57	0.00	2.476	10.16	2.21	3.1	96.9	0.0	0.20	0.96	0.62	0.82	2.56	8708	1112	6	0	1	0	0	logfile
✔	7VV0	32133	2024-12-27	2021-11-04	3.5	3.69	—	3.7	0.010	1.49	1.0	0.09	14.05	0.01	2.007	11.04	2.93	4.5	95.5	0.0	-3.44	0.65	0.80	1.76	3.7	0.003	0.62	0.0	0.04	15.22	0.00	2.590	9.02	4.18	3.4	96.6	0.0	2.51	1.29	0.63	0.80	1.22	2175	268	3	0	1	0	0	logfile
✔	7Q5Q	13844	2024-12-26	2021-11-04	4.38	5.03	4.75	4.4	0.009	1.41	0.0	0.07	13.56	0.01	2.152	3.06	2.08	2.6	97.4	0.0	-1.58	0.90	0.88	—	4.4	0.004	0.70	0.0	0.04	12.66	0.00	2.349	10.66	0.00	2.4	97.6	0.0	1.64	0.80	0.90	0.88	—	42336	5472	24	0	0	0	0	logfile

• ← previous
• Page 263 of 409
• next →