Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VXE	32177	2024-12-27	2021-11-12	3.2	2.31	—	2.0	0.003	0.45	0.0	0.04	7.36	0.00	2.082	1.83	0.00	4.4	95.5	0.1	-1.79	0.61	0.54	2.41	2.1	0.003	0.57	0.0	0.04	12.67	0.00	2.173	3.33	0.97	3.8	96.0	0.2	-0.09	1.46	0.70	0.73	2.56	49296	3186	3	0	0	0	24366	logfile
✔	7VX4	32168	2024-12-27	2021-11-12	3.9	4.09	—	4.2	0.003	0.63	0.0	0.04	8.88	0.00	2.082	7.58	0.14	0.9	99.0	0.1	-2.27	0.58	0.69	2.52	4.1	0.003	0.71	0.0	0.05	14.74	0.00	2.217	9.39	3.02	2.4	97.6	0.0	0.15	1.39	0.64	0.77	1.90	6493	791	4	0	6	0	0	logfile
✔	7STF	25427	2024-12-27	2021-11-12	3.14	3.37	—	3.2	0.009	1.21	0.0	0.06	15.26	0.01	1.998	37.36	0.14	20.1	79.1	0.7	-3.76	0.81	0.70	1.92	3.1	0.004	0.88	0.0	0.05	17.05	0.01	2.460	19.99	2.84	14.9	84.8	0.2	-3.39	0.55	0.82	0.71	1.25	6414	817	5	0	0	0	0	logfile
✔	7SSP	25412	2024-12-31	2021-11-11	3.5	3.32	3.41	3.7	0.004	0.63	0.0	0.04	14.58	0.00	2.232	4.57	0.00	6.8	93.2	0.0	-3.24	0.71	0.80	1.40	3.6	0.002	0.60	0.0	0.04	16.61	0.00	2.486	3.69	1.22	4.7	95.3	0.0	2.68	1.37	0.70	0.81	1.19	10930	1376	8	0	0	0	0	logfile
✔	7SSS	25413	2024-12-31	2021-11-11	2.4	2.00	2.36	2.4	0.006	0.66	0.0	0.04	17.64	0.02	2.323	3.55	0.00	2.4	97.6	0.0	0.01	0.59	0.78	4.08	2.3	0.003	0.57	0.0	0.04	18.62	0.00	2.479	7.36	1.46	2.9	97.1	0.0	3.37	0.52	0.60	0.78	3.46	12190	1416	24	0	38	170	0	logfile
✔	7SSX	25416	2024-12-29	2021-11-11	2.89	3.04	—	3.1	0.012	1.38	12.0	0.10	12.35	0.01	2.251	3.61	2.61	5.0	95.0	0.0	-1.17	0.65	0.80	3.42	3.1	0.003	0.67	0.0	0.04	14.89	0.01	2.503	4.62	1.47	3.8	96.2	0.0	2.24	1.10	0.58	0.84	3.53	11283	1384	5	0	3	0	0	logfile
✔	7Q8B	13863	2024-12-31	2021-11-11	3.3	3.20	3.22	3.2	0.004	0.50	0.0	0.05	10.85	0.00	2.012	3.76	0.00	2.7	97.3	0.0	1.33	0.70	0.86	4.06	3.1	0.005	0.63	0.0	0.05	15.22	0.00	2.091	5.00	0.86	2.2	97.8	0.0	0.89	0.49	0.72	0.89	3.90	14640	1850	10	0	15	0	0	logfile
✔	7SSV	25414	2024-12-30	2021-11-11	3.39	3.66	—	3.6	0.018	1.72	20.0	0.11	14.84	0.01	2.215	4.74	6.26	6.6	93.4	0.0	-3.22	0.64	0.81	2.90	3.7	0.005	0.89	1.0	0.04	15.55	0.01	2.086	5.53	3.05	4.5	95.4	0.1	0.41	1.08	0.67	0.86	2.13	13815	1874	8	0	3	0	0	logfile
✔	7SSZ	25417	2024-12-31	2021-11-11	3.25	3.49	—	3.5	0.014	1.70	20.0	0.12	14.90	0.01	0.467	7.21	6.31	5.5	94.5	0.0	-2.29	0.56	0.79	3.16	3.5	0.003	0.59	0.0	0.04	15.34	0.00	2.620	4.95	1.70	3.6	96.4	0.0	1.16	0.58	0.69	0.81	3.59	15283	1908	9	0	3	0	0	logfile
✔	7Q8C	13864	2024-12-31	2021-11-11	2.72	2.78	2.67	2.7	0.005	0.62	0.0	0.05	10.88	0.00	1.953	1.76	0.00	3.0	97.0	0.0	0.25	0.73	0.89	5.04	2.7	0.002	0.62	0.0	0.05	15.22	0.00	2.008	2.07	0.80	2.9	97.1	0.0	0.80	0.90	0.73	0.91	3.73	14975	1850	15	0	10	360	0	logfile
✔	7VWC	32152	2024-12-29	2021-11-10	3.53	3.26	—	3.3	0.009	0.93	0.0	0.05	16.12	0.00	2.127	10.73	0.38	8.9	91.1	0.0	-4.78	0.59	0.81	2.25	3.3	0.004	0.68	0.0	0.04	17.11	0.00	2.513	6.45	1.63	5.2	94.8	0.0	-2.58	1.12	0.58	0.80	1.39	9892	1229	4	0	2	0	0	logfile
✔	7SS5	25404	2024-12-27	2021-11-09	2.7	3.48	2.63	3.2	0.003	0.63	2.0	0.05	19.81	0.00	2.179	8.80	0.00	3.1	96.9	0.0	0.76	0.51	0.75	3.88	3.2	0.003	0.64	0.0	0.04	21.64	0.00	2.072	6.58	1.24	3.7	96.3	0.0	1.78	2.84	0.50	0.87	2.71	6927	676	10	48	6	593	0	logfile
✔	7VVY	32149	2024-12-26	2021-11-09	3.1	3.56	—	3.2	0.013	0.98	0.0	0.06	14.65	0.01	1.885	8.35	0.48	7.9	92.0	0.1	-2.65	0.83	0.76	1.91	3.2	0.003	0.72	1.0	0.04	15.94	0.00	2.048	7.90	1.43	7.1	92.9	0.0	0.07	1.30	0.85	0.82	1.39	42546	5205	8	0	4	0	0	logfile
✔	7SR8	25399	2024-12-28	2021-11-08	3.3	3.26	—	3.4	0.004	0.62	0.0	0.04	12.33	0.01	2.134	9.25	0.00	3.4	96.6	0.0	1.51	0.59	0.76	2.19	3.3	0.003	0.61	0.0	0.04	15.19	0.00	2.369	8.86	3.25	4.1	95.9	0.0	0.93	1.16	0.60	0.80	1.76	9083	1141	6	0	5	0	0	logfile
✔	7SRR	25402	2024-12-29	2021-11-08	2.9	2.20	—	2.0	0.005	0.67	0.0	0.05	12.70	0.00	2.196	3.95	0.12	3.4	96.6	0.0	0.15	0.80	0.78	3.23	2.0	0.004	0.62	0.0	0.04	15.11	0.00	2.546	3.34	1.87	3.9	96.1	0.0	0.72	0.33	0.82	0.82	2.91	8394	1119	6	0	1	0	0	logfile
✔	7SRQ	25401	2024-12-27	2021-11-08	2.7	2.17	—	1.9	0.008	0.80	0.0	0.05	14.14	0.01	2.296	8.67	1.50	2.8	97.2	0.0	0.29	0.70	0.72	4.55	1.9	0.003	0.73	0.0	0.04	15.10	0.00	2.627	7.65	1.50	2.0	98.0	0.0	2.37	1.01	0.72	0.76	3.11	1960	254	2	0	2	0	0	logfile
✔	7SRS	25403	2024-12-29	2021-11-08	3.3	2.62	—	3.4	0.005	0.66	0.0	0.05	12.94	0.00	2.242	4.06	0.23	3.4	96.6	0.0	0.87	0.85	0.84	3.41	3.3	0.003	0.62	0.0	0.04	14.53	0.00	2.515	3.34	2.42	3.7	96.2	0.1	0.91	0.35	0.85	0.86	3.07	8361	1103	7	0	2	0	0	logfile
✔	7VVJ	32141	2024-12-28	2021-11-06	3.2	2.96	3.17	3.2	0.015	1.78	1.0	0.09	14.24	0.01	2.205	6.85	1.77	5.4	94.5	0.1	-1.52	0.60	0.76	3.90	3.2	0.003	0.58	0.0	0.04	16.02	0.00	2.471	5.93	2.54	3.5	96.5	0.0	0.93	0.51	0.71	0.82	2.51	8872	1154	6	0	0	0	0	logfile
✔	7VVM	32144	2024-12-28	2021-11-06	3.2	2.40	3.19	3.2	0.015	1.76	0.0	0.09	13.51	0.00	2.200	6.43	0.60	5.2	94.8	0.0	-1.17	0.60	0.71	2.55	3.2	0.003	0.56	0.0	0.04	16.21	0.00	2.551	7.58	2.74	3.8	96.2	0.0	0.61	0.56	0.65	0.73	2.32	8507	1133	6	0	0	0	0	logfile
✔	7VVN	32145	2024-12-28	2021-11-06	3.8	3.28	3.77	3.7	0.013	1.78	0.0	0.08	15.14	0.01	2.185	9.66	0.37	6.1	93.8	0.1	-2.22	0.66	0.73	1.76	3.4	0.003	0.67	0.0	0.04	16.57	0.00	2.527	9.28	4.24	4.1	95.9	0.0	-0.38	1.69	0.69	0.72	1.38	8130	1086	6	0	0	0	0	logfile

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