Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7W0P	32247	2024-12-29	2021-11-18	3.16	2.41	3.26	3.2	0.003	0.65	0.0	0.04	12.42	0.00	2.199	12.84	0.00	6.6	93.3	0.1	-0.97	0.67	0.67	2.56	3.2	0.003	0.68	0.0	0.04	15.35	0.00	2.475	9.24	2.32	6.3	93.6	0.1	-0.61	1.11	0.68	0.69	2.18	9091	1158	6	0	0	0	0	logfile
✔	7W0C	32238	2024-12-30	2021-11-18	3.93	4.02	—	3.8	0.002	0.55	0.0	0.04	16.22	0.00	2.105	14.31	0.07	4.2	95.8	0.1	-0.14	0.86	0.73	0.17	3.8	0.003	0.64	0.0	0.04	17.31	0.00	2.504	12.13	1.64	4.8	95.1	0.1	0.24	0.49	0.86	0.74	0.20	13663	1492	5	72	2	0	0	logfile
✔	7W02	32234	2024-12-30	2021-11-17	3.3	3.44	—	3.4	0.007	0.89	0.0	0.05	15.17	0.00	1.892	7.36	0.23	10.9	89.1	0.1	-3.18	0.68	0.87	2.65	3.4	0.003	0.65	0.0	0.04	16.08	0.00	1.979	4.31	1.55	8.0	91.9	0.1	-1.15	0.32	0.67	0.87	2.00	12326	1566	2	0	6	0	0	logfile
✔	7W01	32233	2024-12-30	2021-11-17	3.3	3.43	—	3.4	0.011	1.11	1.0	0.06	16.67	0.01	1.717	9.85	0.60	13.3	85.9	0.8	-4.55	0.68	0.86	2.97	3.4	0.002	0.70	0.0	0.04	17.00	0.00	2.448	4.73	1.87	7.8	91.9	0.3	-1.79	1.58	0.67	0.86	1.72	12724	1598	2	0	7	0	0	logfile
✔	7VZF	32227	2024-12-27	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.45	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.005	1.00	0.0	0.05	19.17	0.00	2.269	12.50	6.74	19.4	80.6	0.0	-4.18	1.86	0.37	0.63	0.28	2628	363	3	0	0	0	0	logfile
✔	7QA8	13880	2024-12-27	2021-11-16	2.7	2.20	2.66	2.7	0.009	1.11	0.0	0.06	13.16	0.01	2.323	1.73	0.75	3.3	96.7	0.0	-2.98	0.59	0.79	2.15	2.5	0.002	0.63	0.0	0.04	13.49	0.00	2.621	4.64	3.93	3.4	96.6	0.0	2.59	0.41	0.59	0.81	2.67	6111	622	11	0	38	70	0	logfile
✔	7VZ4	32220	2024-12-29	2021-11-15	1.89	1.72	—	1.9	0.010	1.17	0.0	0.08	28.81	0.00	2.167	2.63	0.97	1.6	98.4	0.0	0.11	0.75	0.82	7.08	1.9	0.004	0.65	0.0	0.04	27.95	0.00	2.537	4.37	0.97	0.8	99.2	0.0	2.98	0.78	0.77	0.86	7.50	11843	746	10	290	0	0	0	logfile
✔	7VYV	32215	2024-12-31	2021-11-15	2.32	2.34	2.29	2.3	0.009	1.10	3.0	0.07	13.12	0.01	2.235	4.68	0.00	5.2	94.7	0.1	-1.40	0.85	0.92	5.76	2.3	0.002	0.56	0.0	0.05	14.56	0.00	2.465	2.75	0.99	4.5	95.4	0.1	-0.88	1.16	0.81	0.91	5.49	16698	2160	3	0	0	0	0	logfile
✔	7STW	25437	2024-12-31	2021-11-15	2.37	2.44	1.98	2.4	0.002	0.50	0.0	0.04	12.97	0.00	1.947	1.92	0.00	1.2	98.8	0.0	0.17	0.74	0.80	2.93	2.4	0.003	0.54	0.0	0.04	17.66	0.00	2.072	3.38	1.74	1.9	98.1	0.0	3.06	0.63	0.75	0.83	2.32	16829	2040	36	0	24	257	0	logfile
✔	7STJ	25430	2024-12-31	2021-11-14	4.4	5.47	—	3.9	0.005	0.72	0.0	0.04	13.42	0.00	2.047	36.29	0.33	10.0	89.9	0.1	-1.96	0.88	0.84	—	3.9	0.003	0.65	0.0	0.04	13.50	0.00	2.319	19.23	0.00	8.3	91.7	0.0	-1.81	0.42	0.89	0.84	—	13515	1672	4	0	0	0	0	logfile
✔	7STK	25431	2024-12-31	2021-11-14	4.0	4.37	—	3.9	0.004	0.59	0.0	0.04	13.68	0.00	2.147	15.41	0.19	7.1	92.5	0.4	-0.96	0.88	0.84	—	3.9	0.004	0.64	0.0	0.04	15.05	0.00	2.388	11.80	1.34	7.3	92.5	0.2	-0.98	0.38	0.88	0.84	—	13911	1726	4	0	0	0	0	logfile
✔	7STH	25428	2024-12-31	2021-11-13	3.5	4.00	—	3.7	0.003	0.56	0.0	0.04	13.68	0.00	2.200	9.57	0.38	7.5	92.4	0.2	-1.32	0.85	0.83	2.05	3.8	0.005	0.83	1.0	0.04	15.21	0.00	2.349	8.45	1.33	5.7	94.2	0.1	-1.14	0.40	0.85	0.82	2.24	14010	1736	4	0	0	0	0	logfile
✔	7VY2	32192	2024-12-27	2021-11-13	2.75	2.61	—	2.7	0.019	1.91	0.0	0.06	21.91	0.02	1.943	15.57	3.39	2.9	97.1	0.0	1.62	0.71	0.79	3.16	2.7	0.004	0.79	0.0	0.04	18.69	0.00	1.856	14.50	2.13	2.9	97.0	0.0	1.82	0.47	0.72	0.84	2.80	46292	4534	131	0	201	0	0	logfile
✔	7STi	25429	2024-12-31	2021-11-13	4.9	6.34	—	4.3	0.004	0.67	0.0	0.04	13.50	0.00	2.001	25.75	0.20	7.8	92.0	0.2	-1.35	0.89	0.83	—	4.3	0.004	0.68	0.0	0.05	13.46	0.00	2.349	22.90	0.00	9.2	90.7	0.1	-1.46	1.61	0.89	0.84	—	13531	1678	3	0	0	0	0	logfile
✔	7ST9	25422	2024-12-27	2021-11-12	2.2	2.95	—	2.8	0.002	0.46	0.0	0.04	17.02	0.00	1.796	2.94	0.71	1.5	98.5	0.0	2.56	0.82	0.78	3.47	2.8	0.009	0.66	0.0	0.04	17.64	0.00	1.682	2.32	0.71	1.6	98.4	0.0	2.03	1.97	0.82	0.86	3.70	46553	2802	26	36	9	423	22930	logfile
✔	7VX8	32171	2024-12-28	2021-11-12	2.8	3.10	—	3.1	0.013	1.23	4.0	0.06	15.86	0.01	1.995	7.41	1.06	4.9	95.1	0.0	-3.11	0.68	0.84	4.23	3.1	0.003	0.61	0.0	0.04	17.44	0.00	2.086	4.86	1.59	2.5	97.5	0.0	0.26	1.14	0.58	0.80	3.87	9018	1120	4	0	4	0	0	logfile
✔	7VXE	32177	2024-12-27	2021-11-12	3.2	2.31	—	2.0	0.003	0.45	0.0	0.04	7.36	0.00	2.082	1.83	0.00	4.4	95.5	0.1	-1.79	0.61	0.54	2.41	2.1	0.003	0.57	0.0	0.04	12.67	0.00	2.173	3.33	0.97	3.8	96.0	0.2	-0.09	1.46	0.70	0.73	2.56	49296	3186	3	0	0	0	24366	logfile
✔	7VX9	32172	2024-12-26	2021-11-12	4.0	4.30	—	4.2	0.002	0.37	0.0	0.04	7.20	0.00	2.022	12.52	0.00	4.1	95.8	0.1	-2.09	0.63	0.59	—	4.1	0.004	0.66	0.0	0.04	14.12	0.00	2.309	36.15	1.90	5.0	94.8	0.2	-0.60	1.35	0.67	0.72	—	46098	3789	4	0	0	0	16250	logfile
✔	7VX4	32168	2024-12-27	2021-11-12	3.9	4.09	—	4.2	0.003	0.63	0.0	0.04	8.88	0.00	2.082	7.58	0.14	0.9	99.0	0.1	-2.27	0.58	0.69	2.52	4.1	0.003	0.71	0.0	0.05	14.74	0.00	2.217	9.39	3.02	2.4	97.6	0.0	0.15	1.39	0.64	0.77	1.90	6493	791	4	0	6	0	0	logfile
✔	7STB	25423	2024-12-26	2021-11-12	2.72	3.46	—	3.2	0.002	0.45	0.0	0.04	14.25	0.00	1.875	4.07	0.00	2.6	97.3	0.0	2.20	0.82	0.75	2.88	3.2	0.003	0.54	0.0	0.04	16.54	0.00	1.749	3.96	0.97	3.3	96.7	0.0	1.47	1.84	0.82	0.80	2.93	45369	2753	15	36	9	0	22555	logfile

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