Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QCN	13897	2024-12-27	2021-11-24	3.4	3.87	—	3.6	0.008	1.47	4.0	0.10	18.42	0.02	2.107	15.06	14.67	8.8	91.0	0.3	-1.90	0.80	0.72	2.34	3.6	0.004	0.72	0.0	0.05	15.23	0.00	2.297	4.91	2.56	7.3	92.7	0.0	-0.70	1.12	0.88	0.87	3.11	6416	814	6	0	18	0	0	logfile
✔	7SXK	25500	2024-12-27	2021-11-23	3.4	2.52	3.78	2.7	0.003	0.72	0.0	0.04	14.87	0.00	2.147	16.82	0.00	18.7	81.0	0.3	-2.76	0.77	0.69	0.39	2.7	0.003	0.77	0.0	0.04	16.47	0.00	2.516	14.13	1.43	19.3	80.4	0.3	-2.74	0.37	0.79	0.73	0.48	48937	6513	12	0	0	0	0	logfile
✔	7SWW	25487	2024-12-27	2021-11-21	3.13	2.34	—	2.0	0.004	0.76	0.0	0.06	13.91	0.01	2.214	9.55	0.00	2.4	97.6	0.0	-0.48	0.58	0.70	2.57	2.0	0.004	0.65	0.0	0.04	15.00	0.00	2.515	7.71	4.46	4.6	95.4	0.0	-0.83	1.18	0.58	0.71	2.28	4172	511	6	0	8	0	0	logfile
✔	7SWQ	25482	2024-12-28	2021-11-21	3.79	4.09	3.83	4.0	0.004	0.74	0.0	0.04	18.24	0.00	1.915	13.13	0.00	10.7	89.3	0.0	-2.38	0.80	0.76	2.70	4.0	0.004	0.72	0.0	0.04	19.52	0.00	1.911	12.91	3.04	8.6	91.4	0.0	-1.85	0.61	0.83	0.82	1.66	6998	791	4	35	1	0	0	logfile
✔	7SWo	25477	2024-12-27	2021-11-20	4.1	3.78	—	3.8	0.007	0.89	0.0	0.05	14.43	0.01	2.215	26.02	0.19	10.0	90.0	0.0	-2.59	0.65	0.76	—	3.8	0.005	0.77	0.0	0.05	14.02	0.01	2.494	16.25	0.00	7.7	92.3	0.0	-1.33	0.51	0.64	0.75	—	4784	627	3	0	0	0	0	logfile
✔	7SWN	25476	2024-12-27	2021-11-20	4.3	3.77	—	3.5	0.007	1.06	0.0	0.06	14.58	0.01	2.203	41.73	0.00	21.9	78.1	0.0	-4.82	0.57	0.68	—	3.5	0.003	0.86	0.0	0.05	13.92	0.01	2.525	18.40	0.28	10.8	89.2	0.0	-3.22	2.76	0.57	0.68	—	3283	422	3	0	0	0	0	logfile
✔	7SWP	25478	2024-12-27	2021-11-20	3.8	3.74	—	4.0	0.008	0.92	0.0	0.05	12.87	0.01	2.202	40.14	0.00	12.1	87.9	0.0	-2.17	0.51	0.71	1.63	3.9	0.004	0.85	0.0	0.05	15.88	0.01	2.348	18.40	7.69	5.8	94.2	0.0	-1.09	2.20	0.52	0.74	1.26	3372	436	3	0	0	0	0	logfile
✔	7QBi	13887	2024-12-27	2021-11-19	3.46	3.72	3.49	3.7	0.008	1.06	0.0	0.05	14.75	0.01	2.231	3.40	0.00	2.8	97.2	0.0	-1.45	0.59	0.76	2.29	3.7	0.003	0.64	0.0	0.04	14.01	0.00	2.589	8.49	2.62	1.3	98.7	0.0	3.36	1.64	0.59	0.80	2.15	4996	622	8	0	16	0	0	logfile
✔	7SWF	25472	2024-12-27	2021-11-19	3.79	4.09	3.83	4.0	0.005	0.73	0.0	0.05	17.16	0.00	2.039	15.69	1.33	9.1	90.9	0.0	-1.82	0.84	0.81	3.02	4.0	0.006	0.79	0.0	0.04	17.94	0.00	2.052	14.05	2.36	8.9	91.1	0.0	-1.40	0.53	0.81	0.83	2.46	6873	778	4	34	1	0	0	logfile
✔	7SVW	25455	2024-12-31	2021-11-19	3.69	3.57	3.59	3.5	0.012	1.46	9.0	0.07	20.29	0.02	0.955	14.70	2.78	4.0	95.8	0.3	0.11	0.78	0.72	2.09	3.5	0.003	0.61	0.0	0.04	21.87	0.00	2.076	6.46	1.70	3.7	96.3	0.0	1.26	1.56	0.82	0.80	1.84	15830	1484	12	190	2	0	0	logfile
✔	7SVR	25452	2024-12-28	2021-11-19	3.9	4.11	—	4.1	0.004	0.80	0.0	0.05	14.30	0.00	2.213	6.79	0.00	4.3	95.7	0.0	-2.10	0.63	0.74	1.24	4.0	0.004	0.68	0.0	0.04	16.71	0.00	2.562	6.31	3.38	6.2	93.8	0.0	0.48	0.51	0.65	0.76	0.88	7841	1134	3	0	20	0	0	logfile
✔	7SWD	25471	2024-12-30	2021-11-19	3.59	3.73	—	3.7	0.006	0.77	0.0	0.05	15.80	0.01	2.124	14.79	0.00	4.5	95.5	0.0	-0.91	0.73	0.79	2.33	3.7	0.003	0.73	0.0	0.04	16.23	0.00	2.499	11.04	2.91	4.2	95.8	0.0	-1.04	1.21	0.73	0.79	2.28	12833	1652	14	0	9	0	0	logfile
✔	7W0P	32247	2024-12-29	2021-11-18	3.16	2.41	3.26	3.2	0.003	0.65	0.0	0.04	12.42	0.00	2.199	12.84	0.00	6.6	93.3	0.1	-0.97	0.67	0.67	2.56	3.2	0.003	0.68	0.0	0.04	15.35	0.00	2.475	9.24	2.32	6.3	93.6	0.1	-0.61	1.11	0.68	0.69	2.18	9091	1158	6	0	0	0	0	logfile
✔	7W0L	32243	2024-12-31	2021-11-18	3.57	2.46	3.66	2.2	0.010	0.94	0.0	0.05	15.21	0.00	1.891	13.94	0.08	8.6	91.3	0.1	-3.27	0.76	0.78	2.29	2.2	0.004	0.71	0.0	0.04	16.76	0.00	2.444	8.48	2.72	6.2	93.7	0.1	-0.63	0.46	0.75	0.77	2.18	11526	1455	8	0	2	0	0	logfile
✔	7W0B	32237	2024-12-30	2021-11-18	3.33	3.61	—	3.5	0.003	0.60	0.0	0.04	14.32	0.00	2.049	11.71	0.00	5.0	94.9	0.1	0.14	0.84	0.79	1.45	3.5	0.003	0.63	0.0	0.04	16.18	0.00	2.470	8.87	0.97	4.1	95.9	0.1	0.21	0.46	0.85	0.80	1.40	12997	1602	2	0	0	0	0	logfile
✔	7QBC	13886	2024-12-27	2021-11-18	3.53	3.78	3.55	3.8	0.008	0.97	0.0	0.05	13.18	0.01	2.055	3.75	0.43	4.9	95.1	0.0	-2.40	0.56	0.74	2.58	3.8	0.004	0.69	0.0	0.04	14.51	0.01	2.546	9.37	1.91	4.7	95.3	0.0	1.29	0.53	0.61	0.78	1.22	5054	622	6	0	16	0	0	logfile
✔	7SV7	25445	2024-12-29	2021-11-18	3.8	3.26	—	3.9	0.003	0.94	0.0	0.04	12.83	0.00	2.003	1.99	0.69	2.2	97.8	0.0	-0.82	0.60	0.81	2.35	3.9	0.004	0.60	0.0	0.04	15.14	0.00	1.892	5.42	3.37	3.0	97.0	0.0	1.03	0.55	0.63	0.82	1.87	9673	1173	3	0	32	0	0	logfile
✔	7W0F	32241	2024-12-31	2021-11-18	4.55	8.43	—	7.5	0.003	0.64	1.0	0.04	17.27	0.00	1.356	21.15	1.19	4.4	94.7	0.8	-0.94	0.71	0.38	—	7.3	0.003	0.67	0.0	0.04	17.21	0.00	2.389	16.28	0.00	5.1	94.8	0.1	-0.62	1.46	0.85	0.69	—	14097	1492	6	94	0	0	0	logfile
✔	7QB9	13882	2024-12-27	2021-11-18	3.1	3.36	3.16	3.4	0.008	1.01	0.0	0.06	12.61	0.01	2.291	2.92	0.00	3.5	96.5	0.0	-2.92	0.56	0.81	2.83	3.4	0.003	0.56	0.0	0.04	12.47	0.00	2.574	3.81	2.33	2.2	97.8	0.0	2.25	0.34	0.55	0.83	2.38	5419	598	4	0	26	0	0	logfile
✔	7SVA	25446	2024-12-27	2021-11-18	3.26	3.94	3.27	3.3	0.003	0.60	0.0	0.04	15.80	0.01	2.078	8.79	0.29	5.6	94.4	0.0	-0.44	0.79	0.72	3.06	3.3	0.004	0.63	0.0	0.04	16.61	0.00	2.354	8.87	0.29	5.1	94.9	0.0	-0.12	1.89	0.90	0.87	2.41	6515	792	3	11	1	0	0	logfile

• ← previous
• Page 260 of 409
• next →