Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7W3X	32295	2024-12-28	2021-11-26	3.21	2.33	3.15	2.2	0.004	0.76	0.0	0.05	18.43	0.00	2.190	8.18	0.00	9.0	91.0	0.0	-2.95	0.77	0.79	3.38	2.1	0.003	0.74	1.0	0.05	16.06	0.00	2.453	10.35	1.49	8.7	91.3	0.0	-2.77	0.95	0.78	0.82	2.90	7429	893	7	0	31	0	0	logfile
✔	7W3T	32293	2024-12-27	2021-11-26	3.59	2.49	3.54	2.2	0.004	0.73	0.0	0.05	17.98	0.01	2.259	8.96	0.00	4.6	95.4	0.0	-2.83	0.76	0.75	4.00	2.2	0.003	0.63	0.0	0.05	15.23	0.00	2.574	7.23	0.62	6.3	93.7	0.0	-2.64	0.31	0.76	0.76	4.12	1455	176	3	0	7	0	0	logfile
✔	7W3Y	32296	2024-12-30	2021-11-26	3.0	3.45	—	3.4	0.006	0.68	0.0	0.04	13.23	0.00	2.117	13.31	0.91	6.5	93.5	0.0	-3.33	0.66	0.85	2.45	3.4	0.003	0.71	0.0	0.04	16.15	0.00	2.486	8.35	2.27	3.8	96.2	0.0	0.60	0.83	0.66	0.85	2.73	12088	1492	4	0	0	0	0	logfile
✔	7W3V	32294	2024-12-28	2021-11-26	3.11	2.33	3.12	2.1	0.004	0.65	0.0	0.05	17.08	0.00	2.228	7.96	0.12	5.7	94.3	0.0	-2.67	0.79	0.79	3.31	2.1	0.005	1.04	0.0	0.07	15.29	0.00	2.188	7.96	2.71	6.0	94.0	0.0	-2.72	0.33	0.80	0.82	2.84	7480	918	8	0	24	0	0	logfile
✔	7W3Z	32297	2024-12-29	2021-11-26	3.0	3.02	—	3.0	0.010	1.25	0.0	0.08	12.51	0.01	2.266	6.00	1.61	2.5	97.5	0.0	-0.23	0.68	0.76	3.00	3.0	0.003	0.60	0.0	0.04	15.72	0.00	2.482	6.05	2.32	2.7	97.3	0.0	1.28	1.54	0.71	0.80	2.09	10221	1295	7	0	1	0	0	logfile
✔	7W4A	32299	2024-12-29	2021-11-26	2.76	2.16	2.69	2.2	0.006	0.71	0.0	0.04	13.80	0.00	2.048	7.08	0.09	2.3	97.7	0.0	1.29	0.63	0.77	3.24	2.2	0.003	0.55	0.0	0.04	15.70	0.00	2.031	6.31	1.42	2.9	97.1	0.0	1.69	0.39	0.62	0.79	3.39	9855	1245	5	0	7	12	0	logfile
✔	7W40	32298	2024-12-28	2021-11-26	3.0	2.99	—	3.0	0.011	1.29	2.0	0.08	12.47	0.01	2.266	7.35	1.92	2.6	97.2	0.2	-0.42	0.62	0.66	1.97	2.9	0.004	0.71	1.0	0.04	15.89	0.01	2.466	7.90	3.64	3.3	96.7	0.0	0.94	1.25	0.64	0.72	1.67	9236	1184	6	0	1	0	0	logfile
✔	7SZ4	25560	2024-12-27	2021-11-25	4.8	7.97	4.67	3.9	0.003	0.79	0.0	0.05	14.41	0.01	2.097	25.58	0.02	18.8	80.5	0.7	-3.20	0.89	0.78	—	4.1	0.004	0.81	0.0	0.05	14.82	0.01	2.268	24.02	0.00	20.0	79.4	0.7	-3.13	0.50	0.89	0.79	—	48242	5973	12	0	0	0	0	logfile
✔	7QCU	13899	2024-12-28	2021-11-25	3.25	4.07	—	3.7	0.013	2.18	65.0	0.16	20.45	0.03	1.868	25.18	6.94	6.9	93.1	0.0	-1.89	0.80	0.66	2.63	3.6	0.004	0.84	0.0	0.05	16.86	0.00	2.301	8.27	2.53	6.5	93.5	0.0	-1.43	0.68	0.87	0.82	2.61	7069	888	6	0	20	0	0	logfile
✔	7SZ7	25563	2024-12-29	2021-11-25	3.4	4.38	—	3.7	0.005	0.79	0.0	0.05	14.43	0.00	1.707	9.79	1.81	11.0	88.6	0.4	-4.49	0.86	0.78	2.38	3.7	0.003	0.69	0.0	0.04	15.07	0.00	2.450	6.49	1.47	8.0	92.0	0.0	-1.96	0.55	0.92	0.88	2.27	10218	1328	4	0	0	0	0	logfile
✔	7SZ5	25561	2024-12-29	2021-11-25	3.6	4.60	—	3.8	0.007	0.90	0.0	0.06	14.97	0.00	1.947	18.21	2.83	16.8	83.0	0.2	-5.33	0.86	0.75	1.50	3.8	0.003	0.71	0.0	0.05	15.25	0.00	2.396	10.71	2.26	11.4	88.6	0.0	-2.57	1.64	0.91	0.85	1.06	9367	1214	4	0	0	0	0	logfile
✔	7SY2	25514	2024-12-27	2021-11-24	3.11	3.85	—	3.5	0.005	0.84	0.0	0.06	13.46	0.01	2.307	2.03	0.14	1.4	98.6	0.0	-0.46	0.82	0.85	2.53	3.5	0.004	0.56	0.0	0.04	15.21	0.00	2.473	7.50	0.86	2.5	97.5	0.0	1.70	1.15	0.83	0.87	2.26	6554	797	4	0	7	0	0	logfile
✔	7SYA	25521	2024-12-27	2021-11-24	3.5	4.86	3.47	3.3	0.003	0.69	0.0	0.04	14.93	0.00	2.087	15.81	0.11	16.5	82.7	0.8	-2.66	0.79	0.73	0.85	3.3	0.004	0.78	0.0	0.04	16.60	0.00	2.402	15.98	1.03	16.9	82.4	0.7	-2.40	0.99	0.79	0.75	0.95	49860	6180	12	0	0	0	0	logfile
✔	7SYF	25524	2024-12-29	2021-11-24	4.2	3.03	3.92	2.2	0.013	1.86	8.0	0.10	14.32	0.01	2.460	1.62	1.31	3.9	96.1	0.0	-1.56	0.67	0.61	—	2.2	0.003	0.75	0.0	0.04	13.86	0.00	2.389	13.84	0.08	3.2	96.8	0.0	0.87	1.16	0.68	0.64	—	11108	1391	1	0	0	0	0	logfile
✔	7SY0	25512	2024-12-27	2021-11-24	3.0	3.75	—	3.5	0.005	0.84	0.0	0.06	13.35	0.01	2.295	2.42	0.00	1.4	98.6	0.0	-0.49	0.80	0.83	3.46	3.5	0.003	0.60	0.0	0.04	15.75	0.00	2.558	6.72	1.29	2.0	98.0	0.0	1.82	0.59	0.80	0.85	2.94	6553	797	4	0	7	0	0	logfile
✔	7SXY	25510	2024-12-27	2021-11-24	2.79	3.53	—	3.2	0.005	0.84	0.0	0.06	13.17	0.01	2.303	2.81	0.00	1.3	98.7	0.0	-0.48	0.82	0.87	3.37	3.2	0.003	0.57	0.0	0.04	14.73	0.00	2.429	5.00	0.71	1.8	98.2	0.0	1.34	1.08	0.81	0.86	2.86	6557	797	4	0	7	0	0	logfile
✔	7SY4	25516	2024-12-27	2021-11-24	3.35	4.12	—	3.8	0.005	0.85	0.0	0.05	13.36	0.01	2.345	2.34	0.00	1.6	98.4	0.0	-0.68	0.83	0.84	3.10	3.8	0.003	0.58	0.0	0.04	15.39	0.00	2.464	6.72	0.71	2.5	97.5	0.0	1.71	1.17	0.83	0.85	2.51	6554	797	4	0	7	0	0	logfile
✔	7SY6	25518	2024-12-27	2021-11-24	2.81	3.51	—	3.2	0.005	0.86	0.0	0.06	13.40	0.01	2.296	2.58	0.14	2.3	97.7	0.0	-0.71	0.83	0.86	3.13	3.2	0.003	0.63	0.0	0.04	15.60	0.00	2.391	7.03	1.57	1.6	98.4	0.0	1.48	0.58	0.82	0.86	2.68	6553	797	4	0	7	0	0	logfile
✔	7QCN	13897	2024-12-27	2021-11-24	3.4	3.87	—	3.6	0.008	1.47	4.0	0.10	18.42	0.02	2.107	15.06	14.67	8.8	91.0	0.3	-1.90	0.80	0.72	2.34	3.6	0.004	0.72	0.0	0.05	15.23	0.00	2.297	4.91	2.56	7.3	92.7	0.0	-0.70	1.12	0.88	0.87	3.11	6416	814	6	0	18	0	0	logfile
✔	7SY8	25520	2024-12-27	2021-11-24	3.14	3.87	—	3.6	0.005	0.87	0.0	0.06	13.43	0.01	2.302	2.81	0.00	1.4	98.6	0.0	-0.20	0.82	0.85	2.97	3.5	0.003	0.57	0.0	0.04	14.78	0.00	2.427	6.88	1.29	2.0	98.0	0.0	1.78	1.12	0.83	0.86	3.02	6552	797	4	0	7	0	0	logfile

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