Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7W7P	32346	2024-12-30	2021-12-06	3.67	3.88	—	4.0	0.003	0.68	0.0	0.04	14.56	0.01	2.183	13.63	0.00	3.8	96.2	0.0	0.05	0.66	0.65	0.79	4.0	0.004	0.80	0.0	0.05	17.39	0.01	2.311	16.47	3.48	5.8	94.2	0.0	-0.20	0.84	0.66	0.71	0.36	13176	1667	6	0	0	0	0	logfile
✔	7W7U	32348	2024-12-28	2021-12-06	3.0	2.54	2.92	2.9	0.003	0.56	0.0	0.04	12.54	0.00	1.966	7.56	0.00	2.6	97.4	0.0	0.77	0.59	0.77	1.85	3.0	0.002	0.53	0.0	0.04	16.27	0.00	1.985	7.30	2.09	2.3	97.7	0.0	1.05	1.31	0.59	0.79	1.65	7833	1015	2	0	2	0	0	logfile
✔	7W7F	32343	2024-12-30	2021-12-04	3.35	3.74	—	3.7	0.015	1.03	0.0	0.07	18.83	0.01	2.144	13.75	0.31	8.1	91.6	0.3	-1.42	0.42	0.74	1.86	3.7	0.007	1.02	2.0	0.06	17.46	0.00	2.086	15.73	2.91	8.6	91.2	0.2	-0.98	0.42	0.42	0.77	1.86	11987	1424	7	0	29	0	0	logfile
✔	7T2H	25613	2024-12-28	2021-12-04	3.2	3.41	3.23	3.4	0.004	0.53	0.0	0.04	14.19	0.00	2.158	8.69	0.65	3.6	96.4	0.0	-3.17	0.66	0.81	3.01	3.4	0.003	0.61	0.0	0.04	15.52	0.00	2.485	8.39	2.38	3.2	96.8	0.0	-0.56	0.40	0.60	0.79	2.44	8677	1119	6	0	1	0	0	logfile
✔	7T2G	25612	2024-12-27	2021-12-04	2.5	1.71	—	1.4	0.007	0.88	0.0	0.05	12.03	0.01	2.214	13.39	1.00	3.5	96.5	0.0	0.61	0.80	0.81	5.15	1.4	0.003	0.60	0.0	0.04	14.81	0.00	2.464	9.56	1.57	1.9	98.1	0.0	0.45	0.40	0.80	0.81	4.45	6922	898	5	0	3	8	0	logfile
✔	7W7E	32342	2024-12-28	2021-12-04	3.4	3.51	—	3.9	0.006	0.67	2.0	0.05	13.83	0.00	2.120	8.28	0.32	8.8	91.2	0.0	-1.54	0.68	0.82	2.16	3.9	0.004	0.70	0.0	0.04	16.57	0.00	2.188	7.39	3.57	7.3	92.7	0.0	-0.85	0.48	0.69	0.84	1.85	8524	1090	6	0	1	0	0	logfile
✔	7QEo	13935	2024-12-27	2021-12-03	2.9	3.47	—	3.1	0.007	0.78	0.0	0.04	13.54	0.00	2.106	5.39	0.00	3.9	96.1	0.0	0.61	0.78	0.88	3.13	3.1	0.003	0.66	0.0	0.04	15.39	0.00	2.548	5.06	1.52	2.8	97.2	0.0	2.55	0.48	0.77	0.87	2.46	3056	368	6	0	6	4	0	logfile
✔	7QEY	13944	2024-12-29	2021-12-03	2.0	2.46	—	2.2	0.005	0.85	0.0	0.03	10.53	0.00	2.199	3.57	2.35	1.7	98.3	0.0	1.74	0.77	0.90	5.27	2.2	0.003	0.68	0.0	0.04	13.40	0.00	2.548	3.51	2.04	2.1	97.9	0.0	3.40	0.99	0.78	0.92	3.80	9467	1092	18	0	30	281	0	logfile
✔	7QEW	13943	2024-12-29	2021-12-03	2.1	2.62	—	2.2	0.005	0.86	0.0	0.03	11.15	0.00	2.191	3.73	2.18	3.3	96.7	0.0	1.32	0.78	0.89	4.62	2.3	0.003	0.69	0.0	0.04	14.49	0.00	2.556	5.30	1.59	3.1	96.9	0.0	3.03	1.06	0.79	0.92	3.36	9702	1128	18	0	30	234	0	logfile
✔	7T2E	25611	2024-12-27	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.49	0.0	0.04	16.19	0.00	2.592	1.92	1.57	0.3	99.7	0.0	0.56	0.13	0.36	0.86	4.71	2390	312	2	0	0	0	0	logfile
✔	7QEU	13941	2024-12-27	2021-12-03	2.7	3.39	—	3.0	0.007	0.80	0.0	0.04	13.54	0.00	2.135	3.49	0.00	2.6	97.4	0.0	0.76	0.78	0.87	3.01	3.1	0.003	0.58	0.0	0.04	15.06	0.00	2.595	3.49	0.93	2.0	98.0	0.0	3.40	1.18	0.78	0.87	2.55	3002	359	6	0	6	7	0	logfile
✔	7QEV	13942	2024-12-27	2021-12-03	2.9	3.46	—	3.1	0.009	0.86	0.0	0.05	13.68	0.00	2.164	5.92	0.00	4.3	95.7	0.0	-0.15	0.79	0.86	3.19	3.1	0.003	0.70	0.0	0.04	16.23	0.00	2.485	5.92	0.58	4.0	96.0	0.0	1.96	1.68	0.79	0.86	2.33	3204	383	6	0	8	8	0	logfile
✔	7QES	13939	2024-12-27	2021-12-03	2.6	3.37	—	3.0	0.006	0.86	0.0	0.04	13.93	0.00	2.122	3.25	0.00	3.9	96.1	0.0	-0.99	0.77	0.86	3.39	3.0	0.003	0.60	0.0	0.04	15.42	0.00	2.518	3.57	0.30	3.6	96.4	0.0	2.68	1.20	0.78	0.86	2.84	3076	366	6	0	10	14	0	logfile
✔	7W6P	32331	2024-12-28	2021-12-02	3.47	3.79	—	9.6	0.004	0.69	0.0	0.04	13.68	0.00	2.196	14.60	0.11	7.0	93.0	0.0	-0.94	0.22	0.11	0.18	8.5	0.004	0.79	0.0	0.05	15.92	0.00	2.503	16.77	2.44	6.3	93.7	0.0	-0.85	1.95	0.33	0.28	0.86	8408	1083	6	0	1	0	0	logfile
✔	7QE5	13930	2024-12-30	2021-12-01	4.7	4.93	4.36	4.7	0.013	2.06	17.0	0.11	14.37	0.02	2.209	6.87	1.14	4.8	95.0	0.3	-2.59	0.65	0.66	—	4.8	0.003	0.67	0.0	0.04	13.06	0.01	2.326	11.16	0.00	4.4	95.5	0.1	0.35	1.12	0.65	0.68	—	11652	740	2	0	0	0	5932	logfile
✔	7W6K	32328	2024-12-27	2021-12-01	3.5	4.56	3.58	4.1	0.007	1.13	4.0	0.07	14.61	0.01	2.337	47.37	2.01	7.1	92.9	0.0	-3.58	0.66	0.76	1.46	4.2	0.003	0.72	0.0	0.04	17.32	0.00	2.483	11.98	3.88	5.0	95.0	0.0	1.09	3.50	0.64	0.77	0.84	6468	820	2	0	0	0	0	logfile
✔	7T10	25586	2024-12-28	2021-11-30	2.5	2.70	—	2.8	0.005	1.00	0.0	0.06	12.36	0.01	2.235	3.61	0.73	3.0	97.0	0.0	0.62	0.64	0.83	4.77	2.8	0.004	0.70	0.0	0.05	14.01	0.00	2.512	1.71	1.10	3.4	96.6	0.0	1.38	0.90	0.64	0.84	4.30	8429	1146	9	0	0	5	0	logfile
✔	7T11	25587	2024-12-28	2021-11-30	2.7	2.94	—	3.0	0.004	0.61	0.0	0.04	10.84	0.00	2.107	3.46	0.27	2.4	97.6	0.0	0.96	0.60	0.74	3.90	3.0	0.003	0.58	0.0	0.04	13.47	0.00	2.519	2.69	1.47	3.3	96.7	0.0	1.42	0.96	0.62	0.79	3.27	8151	1132	7	0	2	0	0	logfile
✔	7T01	25574	2024-12-27	2021-11-29	2.69	2.92	2.50	3.2	0.004	0.87	0.0	0.05	12.30	0.01	2.335	1.37	0.00	3.8	96.2	0.0	-1.08	0.71	0.83	4.37	3.2	0.004	0.97	0.0	0.05	16.12	0.01	2.484	11.85	3.75	5.7	94.3	0.0	-1.47	0.72	0.72	0.85	3.52	3343	428	3	0	0	0	0	logfile
✔	7W4P	32311	2024-12-28	2021-11-28	3.19	2.52	—	3.2	0.006	0.75	0.0	0.05	12.28	0.01	2.031	4.69	2.18	2.8	97.1	0.1	-0.24	0.80	0.80	2.05	3.1	0.005	0.73	2.0	0.04	14.86	0.01	1.878	7.77	2.11	3.3	96.6	0.1	1.66	1.97	0.81	0.83	1.88	54408	6904	16	0	24	0	0	logfile

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