Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7W9F	32366	2024-12-27	2021-12-09	3.6	2.59	—	2.2	0.003	0.73	0.0	0.05	13.99	0.01	2.302	3.37	0.00	3.7	96.3	0.0	-3.66	0.73	0.72	1.95	3.2	0.003	0.65	0.0	0.04	15.75	0.00	2.514	7.90	1.47	3.1	96.9	0.0	-1.35	0.53	0.74	0.73	1.94	4856	625	3	0	0	0	0	logfile
✔	7W9i	32367	2024-12-27	2021-12-09	3.4	3.65	—	3.7	0.005	0.72	0.0	0.05	14.90	0.01	2.289	3.91	0.00	4.8	95.2	0.0	-5.48	0.68	0.80	2.34	3.7	0.003	0.61	0.0	0.04	16.60	0.00	2.598	5.51	2.16	3.2	96.8	0.0	-1.17	1.19	0.66	0.81	1.99	6412	791	2	0	0	0	0	logfile
✔	7T4F	25675	2024-12-28	2021-12-09	2.7	3.13	2.69	3.1	0.004	0.70	0.0	0.05	14.61	0.00	2.228	4.75	2.44	0.3	99.7	0.0	0.54	0.33	0.71	4.04	3.1	0.002	0.46	0.0	0.04	15.18	0.00	2.635	3.35	1.41	0.5	99.5	0.0	0.42	0.29	0.34	0.80	4.47	7224	980	4	0	0	0	0	logfile
✔	7W8S	32358	2024-12-28	2021-12-08	2.85	3.08	—	3.1	0.003	0.60	0.0	0.04	11.07	0.01	2.102	0.87	3.48	3.4	96.6	0.0	-4.03	0.67	0.82	4.11	3.1	0.003	0.62	0.0	0.04	14.82	0.00	2.414	1.51	2.90	2.9	97.1	0.0	-1.09	0.44	0.67	0.83	3.32	6455	788	4	0	3	0	0	logfile
✔	7T3K	25661	2024-12-28	2021-12-08	3.5	4.08	—	3.5	0.004	0.75	0.0	0.05	17.27	0.01	2.223	7.05	0.52	5.0	95.0	0.0	-1.93	0.80	0.64	0.97	3.6	0.004	0.71	0.0	0.04	17.79	0.00	2.350	14.47	2.06	5.2	94.8	0.0	-0.20	1.43	0.90	0.82	1.06	50620	6242	22	122	0	0	0	logfile
✔	7T3o	25666	2024-12-27	2021-12-08	3.3	3.72	—	3.7	0.006	0.68	0.0	0.05	13.49	0.00	2.284	3.91	0.29	7.1	92.9	0.0	-3.36	0.49	0.86	1.84	3.7	0.003	0.66	0.0	0.04	16.17	0.00	2.601	3.76	2.93	4.0	96.0	0.0	0.01	0.51	0.51	0.86	1.47	3410	452	1	0	0	0	0	logfile
✔	7T3N	25665	2024-12-27	2021-12-08	3.0	3.31	—	3.3	0.012	0.82	0.0	0.06	14.51	0.01	2.131	5.13	0.00	4.7	95.3	0.0	-3.24	0.51	0.85	3.81	3.2	0.003	0.67	0.0	0.04	14.96	0.00	2.572	7.48	0.87	3.1	96.9	0.0	-0.01	0.39	0.49	0.84	2.87	3512	452	2	0	2	0	0	logfile
✔	7T3U	25671	2024-12-26	2021-12-08	3.7	4.00	3.79	3.8	0.002	0.45	0.0	0.04	12.94	0.00	1.968	6.33	0.00	4.2	95.8	0.0	1.94	0.59	0.60	1.23	3.8	0.016	1.11	0.0	0.05	14.79	0.01	2.056	12.52	6.72	7.3	92.7	0.0	0.35	2.18	0.64	0.70	1.28	44501	7269	8	0	14	0	0	logfile
✔	7T3L	25662	2024-12-28	2021-12-08	3.6	8.29	—	3.5	0.004	0.74	0.0	0.05	18.09	0.01	2.223	7.57	0.52	5.0	95.0	0.0	-1.92	0.73	0.45	-0.03	3.3	0.003	0.63	0.0	0.04	18.39	0.00	2.423	17.24	1.09	5.1	94.9	0.0	0.24	1.17	0.94	0.84	0.04	52219	6242	28	200	0	0	0	logfile
✔	7QG9	13953	2024-12-28	2021-12-07	3.45	3.10	3.41	3.3	0.003	0.54	0.0	0.04	13.21	0.00	2.156	8.97	0.00	3.3	96.7	0.0	-1.73	0.75	0.83	2.63	3.3	0.004	0.61	0.0	0.05	15.60	0.00	2.411	7.32	2.60	3.9	96.1	0.0	-1.54	0.41	0.77	0.85	2.43	50829	6576	27	0	0	0	0	logfile
✔	7W88	32353	2024-12-28	2021-12-07	3.5	3.65	—	3.6	0.003	0.71	0.0	0.04	16.87	0.00	2.225	15.29	8.23	15.2	84.8	0.0	-5.15	0.70	0.69	1.82	3.6	0.004	0.74	0.0	0.04	17.68	0.01	2.397	13.61	8.35	17.4	82.6	0.0	-3.36	0.48	0.70	0.70	1.50	7138	896	1	0	0	0	0	logfile
✔	7W8G	32355	2024-12-30	2021-12-07	2.52	2.20	—	2.5	0.004	0.77	0.0	0.05	14.00	0.01	2.042	5.41	0.04	2.3	97.7	0.0	-0.29	0.72	0.75	2.86	2.5	0.002	0.57	0.0	0.04	16.95	0.00	1.958	6.43	2.03	2.1	97.9	0.0	1.10	0.52	0.75	0.80	2.63	62460	7876	24	0	34	0	0	logfile
✔	7W84	32351	2024-12-30	2021-12-07	3.4	2.66	—	3.4	0.004	0.74	1.0	0.05	16.68	0.00	1.982	18.13	7.85	12.9	87.0	0.1	-3.60	0.79	0.78	1.21	3.4	0.005	0.88	0.0	0.05	18.06	0.01	2.286	17.05	5.63	12.0	88.0	0.0	-1.94	0.85	0.80	0.80	1.13	7879	995	1	0	0	0	0	logfile
✔	7QFQ	13947	2024-12-29	2021-12-06	3.6	3.83	3.58	4.0	0.002	0.54	0.0	0.04	12.93	0.00	2.177	8.31	0.00	5.4	94.6	0.0	-0.70	0.65	0.70	1.50	4.0	0.004	0.58	0.0	0.04	14.90	0.00	2.484	7.17	1.51	6.9	93.1	0.0	-0.96	0.38	0.68	0.74	1.31	10659	1291	1	0	0	0	0	logfile
✔	7QFW	13950	2024-12-28	2021-12-06	3.86	2.50	3.84	2.1	0.006	0.98	0.0	0.05	22.55	0.01	2.276	6.63	0.36	3.9	96.1	0.0	-4.68	0.71	0.67	1.40	2.2	0.003	0.69	0.0	0.04	22.84	0.00	2.412	11.21	2.15	3.5	96.5	0.0	-0.73	1.55	0.71	0.66	1.12	8765	917	4	64	0	0	0	logfile
✔	7W7U	32348	2024-12-28	2021-12-06	3.0	2.54	2.92	2.9	0.003	0.56	0.0	0.04	12.54	0.00	1.966	7.56	0.00	2.6	97.4	0.0	0.77	0.59	0.77	1.85	3.0	0.002	0.53	0.0	0.04	16.27	0.00	1.985	7.30	2.09	2.3	97.7	0.0	1.05	1.31	0.59	0.79	1.65	7833	1015	2	0	2	0	0	logfile
✔	7W7W	32350	2024-12-28	2021-12-06	3.2	2.98	3.22	3.2	0.003	1.16	0.0	0.04	13.44	0.00	2.051	8.21	0.00	2.9	97.1	0.0	0.82	0.59	0.74	2.05	3.2	0.002	0.84	0.0	0.04	15.71	0.00	1.986	7.27	2.18	3.3	96.7	0.0	0.86	0.35	0.58	0.75	1.58	7870	1018	2	0	2	0	0	logfile
✔	7T32	25648	2024-12-27	2021-12-06	3.4	3.96	—	3.9	0.006	0.77	0.0	0.04	14.07	0.01	2.313	6.67	0.00	5.1	94.6	0.3	1.86	0.44	0.76	0.75	3.9	0.003	0.70	0.0	0.04	16.07	0.00	2.509	8.27	3.17	3.8	96.0	0.3	2.46	1.25	0.44	0.79	0.65	2861	375	2	0	1	0	0	logfile
✔	7W7P	32346	2024-12-30	2021-12-06	3.67	3.88	—	4.0	0.003	0.68	0.0	0.04	14.56	0.01	2.183	13.63	0.00	3.8	96.2	0.0	0.05	0.66	0.65	0.79	4.0	0.004	0.80	0.0	0.05	17.39	0.01	2.311	16.47	3.48	5.8	94.2	0.0	-0.20	0.84	0.66	0.71	0.36	13176	1667	6	0	0	0	0	logfile
✔	7W7V	32349	2024-12-28	2021-12-06	3.0	2.82	3.01	3.0	0.003	0.56	0.0	0.04	13.32	0.00	2.010	8.84	0.00	2.5	97.5	0.0	0.63	0.59	0.73	1.18	3.0	0.002	0.55	0.0	0.04	16.79	0.00	2.022	7.57	2.89	2.4	97.6	0.0	0.93	0.56	0.61	0.76	1.68	7823	1012	2	0	2	0	0	logfile

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