Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T6S	25726	2024-12-28	2021-12-14	3.0	2.75	—	3.0	0.013	1.29	3.0	0.10	13.45	0.01	2.223	9.06	0.10	2.2	97.8	0.0	-0.64	0.60	0.81	3.66	3.0	0.003	0.60	0.0	0.04	15.81	0.00	2.536	7.49	1.44	2.5	97.5	0.0	-0.18	1.59	0.61	0.83	3.26	8906	1136	6	0	1	0	0	logfile
✔	7QiA	13985	2024-12-27	2021-12-14	3.5	3.73	3.29	3.6	0.003	0.60	0.0	0.04	12.91	0.00	2.259	11.63	0.00	7.9	92.1	0.0	-1.03	0.65	0.80	1.56	3.7	0.004	0.64	0.0	0.04	14.79	0.00	2.558	11.33	2.39	7.6	92.4	0.0	-0.39	1.33	0.63	0.80	1.71	4843	639	4	0	0	3	0	logfile
✔	7QiC	13987	2024-12-27	2021-12-14	4.1	4.27	4.00	4.2	0.003	0.65	0.0	0.04	12.83	0.00	2.221	13.06	0.20	7.7	92.3	0.0	-0.78	0.64	0.79	—	4.2	0.003	0.65	0.0	0.04	12.79	0.01	2.498	10.61	0.00	7.3	92.7	0.0	0.06	1.38	0.64	0.79	—	4841	639	4	0	1	0	0	logfile
✔	7T76	25735	2024-12-31	2021-12-14	4.43	4.68	4.39	4.5	0.022	1.97	2.0	0.14	12.89	0.02	0.530	1.29	0.77	3.4	96.4	0.3	0.31	0.81	0.80	—	4.5	0.004	0.75	0.0	0.05	11.88	0.00	1.085	11.16	0.00	5.2	94.8	0.0	-0.54	1.87	0.81	0.82	—	16587	1934	42	0	104	0	0	logfile
✔	7T73	25732	2024-12-31	2021-12-14	4.0	4.27	3.95	4.3	0.021	1.92	14.0	0.14	13.61	0.02	1.521	2.44	1.56	3.5	95.7	0.8	-0.60	0.74	0.78	—	4.3	0.005	0.97	1.0	0.05	14.31	0.01	2.212	10.82	2.87	3.7	96.1	0.1	-0.73	0.86	0.76	0.79	—	16010	1907	28	0	78	0	0	logfile
✔	7T6T	25727	2024-12-28	2021-12-14	3.2	2.74	—	3.3	0.011	1.55	0.0	0.10	13.22	0.01	2.223	13.63	1.16	2.0	98.0	0.0	0.19	0.68	0.80	2.07	3.3	0.004	0.70	0.0	0.05	16.85	0.00	2.524	11.83	3.23	1.3	98.7	0.0	0.01	0.70	0.66	0.81	2.20	7164	908	6	0	2	0	0	logfile
✔	7T5P	25706	2024-12-30	2021-12-13	3.4	3.23	3.35	2.2	0.003	0.59	0.0	0.04	17.85	0.00	1.971	15.30	0.39	4.7	95.3	0.0	1.09	0.76	0.73	0.61	2.2	0.003	0.60	0.0	0.04	18.07	0.00	2.272	11.40	3.10	3.8	96.2	0.0	1.80	0.41	0.76	0.74	0.38	13597	822	2	0	0	0	6866	logfile
✔	7QHH	13972	2024-12-30	2021-12-12	3.6	3.51	3.48	3.6	0.014	1.83	0.0	0.09	13.09	0.01	2.546	3.81	0.19	0.3	99.6	0.1	-0.83	0.66	0.74	3.73	3.5	0.004	0.66	0.0	0.04	13.47	0.00	2.423	7.61	2.83	1.2	98.8	0.0	1.75	1.28	0.64	0.73	2.70	13626	1982	16	0	14	0	0	logfile
✔	7T55	25695	2024-12-29	2021-12-11	4.1	4.86	4.16	4.3	0.004	0.71	0.0	0.04	13.63	0.00	1.743	14.08	0.24	2.9	97.0	0.1	0.26	0.75	0.76	—	4.3	0.004	0.66	0.0	0.04	13.41	0.00	1.899	11.94	0.00	3.1	96.9	0.0	1.31	1.28	0.79	0.85	—	11460	1464	6	0	4	0	0	logfile
✔	7T54	25694	2024-12-28	2021-12-11	4.5	7.46	4.54	4.6	0.004	0.70	1.0	0.05	12.14	0.00	2.078	8.94	0.68	4.4	95.5	0.1	0.70	0.62	0.64	—	4.6	0.005	0.78	0.0	0.04	11.97	0.00	2.484	13.37	0.00	9.7	90.3	0.0	-0.85	1.26	0.70	0.74	—	8552	1416	4	0	2	0	0	logfile
✔	7T57	25697	2024-12-29	2021-12-11	3.7	4.28	3.83	4.1	0.003	0.73	0.0	0.04	14.11	0.00	1.826	9.53	0.72	2.7	97.1	0.1	0.90	0.72	0.74	0.99	4.1	0.003	0.72	0.0	0.04	16.27	0.00	1.959	8.93	2.01	2.1	97.9	0.0	1.19	0.86	0.73	0.80	1.28	11460	1464	6	0	4	0	0	logfile
✔	7QHA	13968	2024-12-27	2021-12-11	2.97	4.06	3.00	3.8	0.003	0.59	0.0	0.04	12.23	0.00	2.268	6.68	0.00	2.7	97.3	0.0	1.85	0.69	0.86	2.37	3.8	0.004	0.83	0.0	0.04	15.38	0.00	2.271	7.14	2.11	2.5	97.5	0.0	1.94	0.93	0.69	0.86	2.27	5282	684	4	0	2	0	0	logfile
✔	7QHB	13969	2024-12-31	2021-12-11	3.5	3.17	3.39	3.4	0.018	1.05	2.0	0.07	17.10	0.01	2.026	12.72	0.55	9.1	90.9	0.0	-2.00	0.67	0.74	3.10	3.5	0.004	0.62	0.0	0.04	15.63	0.00	2.519	7.59	2.62	3.1	96.9	0.0	1.04	0.58	0.67	0.74	2.49	15052	1966	14	0	24	0	0	logfile
✔	7T56	25696	2024-12-29	2021-12-11	3.7	4.23	3.77	4.1	0.004	0.68	0.0	0.05	13.82	0.00	1.719	9.32	0.72	3.3	96.6	0.1	0.18	0.72	0.76	1.54	4.1	0.003	0.71	0.0	0.04	16.66	0.00	1.926	8.93	3.13	3.0	97.0	0.0	0.91	1.32	0.73	0.81	1.26	11460	1464	6	0	4	0	0	logfile
✔	7WA1	32379	2024-12-28	2021-12-11	2.9	3.13	—	3.1	0.003	0.58	0.0	0.04	11.30	0.01	2.103	2.47	1.59	2.8	97.2	0.0	-3.55	0.68	0.82	3.80	3.1	0.003	0.54	0.0	0.04	15.33	0.00	2.368	4.93	2.17	2.7	97.3	0.0	0.34	1.45	0.66	0.83	3.73	6440	790	3	0	1	0	0	logfile
✔	7T4Q	25685	2024-12-31	2021-12-10	2.9	3.12	—	3.0	0.003	0.62	0.0	0.04	12.89	0.01	2.184	5.12	0.00	3.9	96.1	0.0	-0.62	0.75	0.82	3.45	3.0	0.004	0.72	0.0	0.04	15.88	0.00	2.397	7.20	3.34	2.6	97.4	0.0	0.48	1.30	0.77	0.85	3.07	15473	1946	15	0	6	0	0	logfile
✔	7T4K	25678	2024-12-27	2021-12-10	3.25	3.56	3.27	3.4	0.005	0.88	0.0	0.05	12.76	0.01	2.287	3.74	0.15	2.3	97.7	0.0	0.51	0.73	0.84	2.59	3.4	0.003	0.56	0.0	0.04	14.88	0.00	2.497	4.64	1.20	2.0	98.0	0.0	1.58	0.86	0.70	0.84	1.85	6180	782	2	0	0	0	0	logfile
✔	7T4L	25679	2024-12-27	2021-12-10	3.28	3.55	3.30	3.4	0.005	0.95	0.0	0.05	13.46	0.01	2.269	5.36	0.00	2.5	97.5	0.0	1.35	0.70	0.81	1.97	3.4	0.003	0.57	0.0	0.04	15.50	0.00	2.538	6.35	2.09	2.6	97.4	0.0	1.81	1.79	0.74	0.85	1.93	6062	755	2	0	0	0	0	logfile
✔	7T4S	25687	2024-12-31	2021-12-10	3.1	2.40	—	2.7	0.004	0.64	0.0	0.04	13.12	0.01	2.204	7.59	0.00	3.1	96.9	0.0	-0.13	0.80	0.78	3.71	2.7	0.004	0.69	0.0	0.04	15.95	0.00	2.205	8.55	2.56	3.2	96.8	0.0	0.19	0.44	0.82	0.81	2.76	16404	2045	14	0	10	0	0	logfile
✔	7T4N	25681	2024-12-27	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.5	0.003	0.52	0.0	0.04	16.50	0.00	2.547	4.31	1.53	1.5	98.5	0.0	1.42	0.20	0.66	0.87	3.70	6476	803	2	0	0	0	0	logfile

• ← previous
• Page 256 of 409
• next →