Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QK1	14028	2024-12-27	2021-12-17	3.03	3.20	2.13	3.2	0.011	1.97	2.0	0.11	12.98	0.01	2.502	0.00	0.00	5.5	94.5	0.0	-1.61	0.48	0.84	4.10	3.2	0.004	0.74	0.0	0.05	16.46	0.00	2.588	3.70	3.28	3.0	97.0	0.0	-1.65	2.23	0.42	0.84	4.21	3444	450	6	0	0	0	0	logfile
✔	7QKG	14041	2024-12-27	2021-12-17	3.36	3.19	3.09	3.4	0.010	2.03	0.0	0.10	10.76	0.01	2.528	0.00	0.00	6.4	93.6	0.0	-1.98	0.38	0.80	4.23	3.4	0.002	0.57	0.0	0.05	13.72	0.00	2.634	1.62	0.00	4.5	95.5	0.0	-1.18	0.85	0.34	0.81	4.45	2469	162	3	0	0	0	1278	logfile
✔	7QKH	14042	2024-12-27	2021-12-17	3.17	3.37	2.07	3.5	0.011	2.48	5.0	0.19	15.22	0.01	2.470	1.29	0.00	14.6	85.4	0.0	-3.56	0.37	0.74	3.98	6.5	0.004	0.96	0.0	0.22	15.38	0.00	2.563	5.81	0.56	5.7	94.3	0.0	-2.73	2.26	0.33	0.70	4.25	3105	204	6	0	0	0	1593	logfile
✔	7QJY	14026	2024-12-27	2021-12-17	3.14	2.93	3.08	3.1	0.011	1.87	0.0	0.09	12.32	0.01	2.519	0.00	0.25	5.7	94.3	0.0	-2.50	0.38	0.82	5.27	3.1	0.004	0.72	0.0	0.05	16.69	0.00	2.422	4.70	1.01	2.1	97.9	0.0	-2.17	2.62	0.35	0.82	3.93	3444	450	6	0	0	0	0	logfile
✔	7T90	25749	2024-12-30	2021-12-17	3.32	3.71	—	3.6	0.006	0.95	3.0	0.06	12.71	0.00	2.146	10.23	0.23	5.1	94.9	0.0	-0.77	0.69	0.79	2.80	3.6	0.003	0.63	0.0	0.04	15.46	0.00	2.385	6.66	2.42	4.8	95.2	0.0	0.18	0.98	0.70	0.83	2.30	8451	1124	6	0	1	1	0	logfile
✔	7QJV	14023	2024-12-30	2021-12-17	3.29	3.75	2.41	3.4	0.012	2.13	7.0	0.11	11.77	0.01	2.497	0.72	0.13	9.5	90.5	0.0	-2.07	0.44	0.77	2.75	3.4	0.003	0.55	0.0	0.05	12.66	0.00	2.506	2.02	0.00	3.7	96.3	0.0	-1.92	0.53	0.44	0.77	3.69	13860	900	12	0	0	0	7056	logfile
✔	7T8X	25748	2024-12-30	2021-12-17	3.21	3.47	—	3.5	0.004	0.72	0.0	0.05	12.83	0.00	2.063	7.65	0.00	3.8	96.2	0.0	0.02	0.69	0.83	3.18	3.5	0.003	0.59	0.0	0.04	14.66	0.00	2.456	5.28	1.89	3.3	96.7	0.0	0.51	0.37	0.70	0.86	2.59	8555	1126	6	0	1	0	0	logfile
✔	7QKL	14046	2024-12-27	2021-12-17	2.07	2.04	1.98	2.0	0.011	2.37	0.0	0.25	12.79	0.01	2.537	0.14	0.00	3.6	96.4	0.0	-1.75	0.40	0.83	7.75	2.0	0.003	0.61	0.0	0.05	16.88	0.00	2.619	3.82	0.25	2.7	97.3	0.0	-1.28	1.99	0.44	0.91	8.18	3468	456	6	0	0	0	0	logfile
✔	7QKJ	14044	2024-12-27	2021-12-17	3.26	3.08	3.11	3.2	0.012	2.04	12.0	0.16	11.59	0.01	2.510	0.21	0.00	9.9	90.1	0.0	-2.24	0.35	0.71	3.92	3.2	0.004	1.09	1.0	0.05	15.82	0.00	1.786	8.26	2.15	7.0	93.0	0.0	-2.77	1.05	0.36	0.85	2.59	6888	900	12	0	0	0	0	logfile
✔	7QK5	14038	2024-12-29	2021-12-17	1.92	1.67	1.83	2.2	0.011	1.89	4.0	0.10	10.96	0.01	2.401	0.10	0.00	4.5	95.5	0.0	-1.58	0.32	0.78	6.85	2.2	0.003	0.60	0.0	0.05	18.13	0.00	2.571	2.20	3.59	4.2	95.8	0.0	-1.89	1.63	0.36	0.82	7.01	10485	666	18	0	36	0	5337	logfile
✔	7WBJ	32401	2024-12-28	2021-12-16	3.42	3.69	—	3.7	0.004	0.61	0.0	0.05	14.59	0.00	1.264	12.09	0.21	4.9	95.1	0.0	-1.06	0.65	0.74	2.02	3.7	0.003	0.57	0.0	0.04	16.35	0.00	2.492	8.54	2.57	3.5	96.5	0.0	-0.34	0.38	0.64	0.76	1.43	8989	1146	6	0	0	0	0	logfile
✔	7WAZ	32390	2024-12-29	2021-12-15	3.4	3.85	—	3.4	0.002	0.59	0.0	0.04	21.36	0.00	2.160	11.49	5.53	4.0	95.8	0.2	0.74	0.67	0.58	0.88	3.4	0.003	0.66	0.0	0.04	22.00	0.00	2.440	12.65	1.44	5.4	94.5	0.1	0.33	1.31	0.69	0.63	0.88	11034	952	4	157	0	0	0	logfile
✔	7WB5	32395	2024-12-27	2021-12-15	3.7	3.89	—	3.9	0.011	1.41	0.0	0.09	21.95	0.02	2.188	18.30	14.00	18.2	79.6	2.2	-4.90	0.61	0.78	2.04	3.9	0.004	0.83	0.0	0.05	16.86	0.01	2.340	16.40	6.29	9.7	90.0	0.2	-3.55	1.64	0.62	0.77	2.05	3256	408	4	0	3	0	0	logfile
✔	7WB0	32391	2024-12-29	2021-12-15	3.2	3.52	—	3.3	0.003	0.58	0.0	0.03	21.37	0.00	2.136	7.20	0.00	3.3	96.6	0.1	0.54	0.70	0.73	1.78	3.3	0.005	0.64	0.0	0.04	21.94	0.00	2.499	7.15	0.86	5.3	94.5	0.1	0.28	1.07	0.72	0.78	1.51	10096	797	4	175	0	0	0	logfile
✔	7WB1	32392	2024-12-29	2021-12-15	3.7	3.09	—	3.0	0.003	0.59	0.0	0.04	22.13	0.00	2.046	11.12	0.00	4.7	95.2	0.1	0.55	0.83	0.75	0.94	3.0	0.004	0.65	0.0	0.04	22.69	0.00	2.077	12.19	1.19	4.9	95.1	0.0	0.43	1.02	0.83	0.76	1.40	11524	960	4	178	0	0	0	logfile
✔	7WAY	32389	2024-12-29	2021-12-15	2.9	3.11	—	2.9	0.004	0.54	0.0	0.04	19.59	0.00	2.172	5.59	0.00	2.8	97.2	0.0	1.31	0.87	0.85	2.73	2.9	0.003	0.55	0.0	0.03	20.05	0.00	2.508	4.13	0.48	2.2	97.8	0.0	1.88	0.34	0.88	0.88	2.26	11453	960	4	175	0	0	0	logfile
✔	7T73	25732	2024-12-31	2021-12-14	4.0	4.27	3.95	4.3	0.021	1.92	14.0	0.14	13.61	0.02	1.521	2.44	1.56	3.5	95.7	0.8	-0.60	0.74	0.78	—	4.3	0.005	0.97	1.0	0.05	14.31	0.01	2.212	10.82	2.87	3.7	96.1	0.1	-0.73	0.86	0.76	0.79	—	16010	1907	28	0	78	0	0	logfile
✔	7T76	25735	2024-12-31	2021-12-14	4.43	4.68	4.39	4.5	0.022	1.97	2.0	0.14	12.89	0.02	0.530	1.29	0.77	3.4	96.4	0.3	0.31	0.81	0.80	—	4.5	0.004	0.75	0.0	0.05	11.88	0.00	1.085	11.16	0.00	5.2	94.8	0.0	-0.54	1.87	0.81	0.82	—	16587	1934	42	0	104	0	0	logfile
✔	7WAH	32385	2024-12-30	2021-12-14	2.45	2.65	—	2.8	0.002	0.51	0.0	0.04	14.18	0.00	2.239	7.07	0.55	1.7	98.3	0.0	0.28	0.64	0.80	3.72	2.8	0.003	0.60	0.0	0.04	17.05	0.00	2.456	6.36	2.42	2.2	97.8	0.0	0.34	0.49	0.63	0.80	3.43	13217	1473	4	62	4	0	0	logfile
✔	7T6V	25729	2024-12-28	2021-12-14	3.1	2.67	—	3.2	0.011	1.26	3.0	0.09	12.33	0.01	2.047	7.55	0.10	2.1	97.9	0.0	1.19	0.76	0.81	2.45	3.2	0.006	0.73	0.0	0.05	15.24	0.00	2.457	8.38	1.33	2.7	97.3	0.0	0.91	0.50	0.78	0.85	2.04	8949	1142	7	0	1	0	0	logfile

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