Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T9L	25761	2024-12-27	2021-12-19	2.66	3.24	—	3.1	0.006	0.96	0.0	0.06	14.12	0.01	2.276	3.89	0.14	2.8	97.2	0.0	-1.53	0.78	0.84	3.31	3.1	0.004	0.72	0.0	0.05	16.60	0.00	2.417	7.95	2.85	2.4	97.6	0.0	1.39	2.13	0.77	0.85	3.14	6567	796	4	0	7	0	0	logfile
✔	7QKV	14054	2024-12-29	2021-12-19	3.23	2.84	3.19	3.3	0.011	1.92	0.0	0.09	12.28	0.02	2.512	0.73	0.00	3.5	96.5	0.0	-2.11	0.37	0.72	4.94	3.3	0.003	0.59	0.0	0.05	16.39	0.00	2.274	5.95	2.59	4.6	95.4	0.0	-2.76	1.34	0.41	0.82	5.91	9585	621	9	0	0	0	4887	logfile
✔	7QKZ	14058	2024-12-27	2021-12-19	2.65	2.79	2.28	3.2	0.013	2.86	9.0	0.34	18.75	0.02	2.498	0.59	0.00	9.9	90.1	0.0	-1.61	0.34	0.61	7.02	2.7	0.024	4.11	1.0	0.38	19.43	0.01	2.461	9.46	2.02	1.2	98.8	0.0	-1.87	5.43	0.33	0.63	7.02	1701	99	9	0	0	0	891	logfile
✔	7QL2	14061	2024-12-27	2021-12-19	2.95	2.96	2.65	3.1	0.010	2.11	2.0	0.11	10.98	0.01	2.674	0.00	0.00	7.6	92.4	0.0	-2.82	0.30	0.74	4.50	3.4	0.003	0.59	0.0	0.05	12.42	0.00	2.628	3.50	1.48	13.2	86.8	0.0	-3.47	1.15	0.24	0.74	4.90	2286	150	3	0	0	0	1179	logfile
✔	7QKX	14056	2024-12-27	2021-12-19	3.16	3.10	2.99	3.2	0.011	1.82	0.0	0.09	10.51	0.01	2.523	0.00	0.00	3.3	96.7	0.0	-1.48	0.39	0.79	6.00	3.2	0.002	0.56	0.0	0.05	12.49	0.00	2.474	2.49	0.26	2.8	97.2	0.0	-1.89	0.85	0.44	0.86	5.71	6822	438	6	0	0	0	3480	logfile
✔	7QL6	14065	2024-12-31	2021-12-19	3.23	3.65	3.39	3.6	0.004	0.67	1.0	0.05	15.26	0.00	2.258	7.26	0.60	3.3	96.7	0.0	0.66	0.72	0.80	3.00	3.5	0.004	0.62	0.0	0.04	14.16	0.00	2.440	8.04	2.18	3.8	96.2	0.0	0.52	1.33	0.71	0.81	3.22	16617	1990	15	0	38	0	0	logfile
✔	7T96	25752	2024-12-30	2021-12-18	3.22	2.43	—	2.2	0.008	0.94	3.0	0.06	12.64	0.00	2.091	11.18	0.35	7.3	92.7	0.0	-0.99	0.77	0.77	2.54	2.2	0.004	0.72	0.0	0.04	15.27	0.00	2.419	7.13	3.69	5.4	94.6	0.0	-0.06	0.96	0.79	0.81	1.82	8450	1122	6	0	2	0	0	logfile
✔	7QKL	14046	2024-12-27	2021-12-17	2.07	2.04	1.98	2.0	0.011	2.37	0.0	0.25	12.79	0.01	2.537	0.14	0.00	3.6	96.4	0.0	-1.75	0.40	0.83	7.75	2.0	0.003	0.61	0.0	0.05	16.88	0.00	2.619	3.82	0.25	2.7	97.3	0.0	-1.28	1.99	0.44	0.91	8.18	3468	456	6	0	0	0	0	logfile
✔	7QJY	14026	2024-12-27	2021-12-17	3.14	2.93	3.08	3.1	0.011	1.87	0.0	0.09	12.32	0.01	2.519	0.00	0.25	5.7	94.3	0.0	-2.50	0.38	0.82	5.27	3.1	0.004	0.72	0.0	0.05	16.69	0.00	2.422	4.70	1.01	2.1	97.9	0.0	-2.17	2.62	0.35	0.82	3.93	3444	450	6	0	0	0	0	logfile
✔	7QJV	14023	2024-12-30	2021-12-17	3.29	3.75	2.41	3.4	0.012	2.13	7.0	0.11	11.77	0.01	2.497	0.72	0.13	9.5	90.5	0.0	-2.07	0.44	0.77	2.75	3.4	0.003	0.55	0.0	0.05	12.66	0.00	2.506	2.02	0.00	3.7	96.3	0.0	-1.92	0.53	0.44	0.77	3.69	13860	900	12	0	0	0	7056	logfile
✔	7QKG	14041	2024-12-27	2021-12-17	3.36	3.19	3.09	3.4	0.010	2.03	0.0	0.10	10.76	0.01	2.528	0.00	0.00	6.4	93.6	0.0	-1.98	0.38	0.80	4.23	3.4	0.002	0.57	0.0	0.05	13.72	0.00	2.634	1.62	0.00	4.5	95.5	0.0	-1.18	0.85	0.34	0.81	4.45	2469	162	3	0	0	0	1278	logfile
✔	7QK2	14029	2024-12-27	2021-12-17	2.61	2.61	2.37	2.7	0.011	1.86	10.0	0.11	10.81	0.01	2.499	0.15	0.00	4.1	95.9	0.0	-1.51	0.37	0.86	6.04	2.8	0.002	0.61	0.0	0.05	17.03	0.00	2.626	3.02	2.96	2.4	97.6	0.0	-1.65	1.69	0.37	0.87	5.26	3246	426	6	0	0	0	0	logfile
✔	7T94	25751	2024-12-30	2021-12-17	3.16	2.39	—	2.1	0.007	0.93	2.0	0.06	12.23	0.00	2.081	8.29	0.12	5.3	94.7	0.0	-0.68	0.77	0.77	3.26	2.1	0.003	0.64	0.0	0.04	14.76	0.00	2.327	6.40	3.25	5.1	94.9	0.0	0.30	0.95	0.78	0.79	2.95	8388	1113	6	0	2	1	0	logfile
✔	7QKH	14042	2024-12-27	2021-12-17	3.17	3.37	2.07	3.5	0.011	2.48	5.0	0.19	15.22	0.01	2.470	1.29	0.00	14.6	85.4	0.0	-3.56	0.37	0.74	3.98	6.5	0.004	0.96	0.0	0.22	15.38	0.00	2.563	5.81	0.56	5.7	94.3	0.0	-2.73	2.26	0.33	0.70	4.25	3105	204	6	0	0	0	1593	logfile
✔	7QJX	14025	2024-12-30	2021-12-17	2.99	3.05	3.00	2.8	0.014	2.56	5.0	0.24	13.83	0.02	2.532	0.29	0.00	1.7	98.2	0.1	-2.52	0.35	0.70	3.48	2.8	0.004	1.21	0.0	0.31	16.12	0.01	2.414	3.25	1.79	6.1	93.9	0.0	-3.62	2.46	0.36	0.78	3.22	13860	900	12	0	0	0	7056	logfile
✔	7WBL	32405	2024-12-29	2021-12-17	3.4	3.46	—	3.5	0.004	0.60	0.0	0.04	15.43	0.00	2.158	6.95	0.72	3.6	96.1	0.4	0.52	0.67	0.77	2.33	3.5	0.002	0.55	0.0	0.04	16.36	0.00	2.500	4.34	1.44	2.8	97.1	0.1	1.17	0.33	0.67	0.79	1.40	6484	791	3	0	5	0	0	logfile
✔	7T8X	25748	2024-12-30	2021-12-17	3.21	3.47	—	3.5	0.004	0.72	0.0	0.05	12.83	0.00	2.063	7.65	0.00	3.8	96.2	0.0	0.02	0.69	0.83	3.18	3.5	0.003	0.59	0.0	0.04	14.66	0.00	2.456	5.28	1.89	3.3	96.7	0.0	0.51	0.37	0.70	0.86	2.59	8555	1126	6	0	1	0	0	logfile
✔	7T90	25749	2024-12-30	2021-12-17	3.32	3.71	—	3.6	0.006	0.95	3.0	0.06	12.71	0.00	2.146	10.23	0.23	5.1	94.9	0.0	-0.77	0.69	0.79	2.80	3.6	0.003	0.63	0.0	0.04	15.46	0.00	2.385	6.66	2.42	4.8	95.2	0.0	0.18	0.98	0.70	0.83	2.30	8451	1124	6	0	1	1	0	logfile
✔	7QK1	14028	2024-12-27	2021-12-17	3.03	3.20	2.13	3.2	0.011	1.97	2.0	0.11	12.98	0.01	2.502	0.00	0.00	5.5	94.5	0.0	-1.61	0.48	0.84	4.10	3.2	0.004	0.74	0.0	0.05	16.46	0.00	2.588	3.70	3.28	3.0	97.0	0.0	-1.65	2.23	0.42	0.84	4.21	3444	450	6	0	0	0	0	logfile
✔	7QK6	14039	2024-12-27	2021-12-17	2.27	2.34	2.17	2.3	0.011	1.84	0.0	0.09	9.70	0.01	2.520	0.00	0.00	6.4	93.6	0.0	-1.99	0.37	0.79	7.78	2.3	0.003	0.62	0.0	0.05	15.64	0.00	2.584	1.62	0.69	5.8	94.2	0.0	-2.07	1.48	0.38	0.85	6.46	2469	162	3	0	0	0	1278	logfile

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