Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TAi	25775	2024-12-30	2021-12-20	3.2	3.59	3.19	3.5	0.006	0.86	0.0	0.05	19.15	0.01	2.087	12.50	1.06	2.8	97.2	0.0	0.97	0.71	0.84	2.65	3.5	0.002	0.54	0.0	0.04	15.42	0.00	2.355	10.23	1.59	2.8	97.2	0.0	1.99	2.17	0.76	0.86	2.12	11109	1272	6	0	18	0	0	logfile
✔	7WCM	32424	2024-12-28	2021-12-20	2.33	2.14	—	2.2	0.003	0.61	0.0	0.04	14.07	0.00	2.281	3.66	0.00	2.5	97.5	0.0	1.05	0.64	0.84	4.03	2.2	0.003	0.62	0.0	0.04	16.20	0.00	2.549	3.36	1.69	2.4	97.6	0.0	1.47	0.32	0.64	0.88	4.11	8232	1047	6	0	1	0	0	logfile
✔	7QN9	14071	2024-12-31	2021-12-20	2.9	3.47	—	3.1	0.003	0.64	0.0	0.05	13.26	0.01	2.164	6.25	0.48	2.1	97.9	0.0	0.56	0.78	0.86	4.01	3.1	0.004	0.74	0.0	0.05	14.05	0.00	2.483	8.62	1.56	1.8	98.2	0.0	1.33	2.78	0.79	0.89	3.86	15696	1889	19	0	31	0	0	logfile
✔	7QNB	14073	2024-12-31	2021-12-20	3.1	3.62	—	3.3	0.003	0.46	0.0	0.04	11.20	0.00	2.241	5.47	0.56	1.7	98.3	0.0	1.87	0.75	0.84	3.27	3.3	0.003	0.64	0.0	0.04	12.55	0.00	2.502	7.16	1.57	2.0	98.0	0.0	1.33	2.14	0.78	0.89	3.79	14793	1767	15	0	24	0	0	logfile
✔	7WCo	32426	2024-12-28	2021-12-20	3.8	3.89	—	3.9	0.008	1.13	0.0	0.06	11.02	0.01	0.599	4.59	0.53	14.2	85.8	0.0	-5.43	0.56	0.85	2.78	3.9	0.003	0.71	0.0	0.05	15.30	0.01	2.540	7.79	4.23	9.0	91.0	0.0	-2.72	1.53	0.56	0.85	2.65	8950	1195	15	0	0	0	0	logfile
✔	7WCR	32428	2024-12-27	2021-12-20	3.5	3.71	—	4.0	0.003	0.71	0.0	0.05	12.88	0.01	1.713	4.50	1.28	2.7	96.9	0.3	-2.76	0.57	0.64	1.03	3.7	0.003	0.71	0.0	0.04	15.62	0.00	2.437	9.31	2.91	4.8	95.2	0.0	-0.61	0.78	0.60	0.69	1.29	4880	628	3	0	0	0	0	logfile
✔	7TAC	25769	2024-12-30	2021-12-20	3.6	3.94	—	3.9	0.004	0.86	0.0	0.05	14.71	0.01	2.149	12.22	0.00	2.3	97.7	0.0	0.94	0.66	0.69	1.31	3.9	0.003	0.68	0.0	0.04	16.87	0.00	2.549	8.20	2.11	2.3	97.7	0.0	3.04	0.59	0.66	0.70	0.72	11842	1526	12	0	6	0	0	logfile
✔	7QNA	14072	2024-12-31	2021-12-20	3.0	3.58	—	3.3	0.003	0.48	0.0	0.04	11.46	0.00	2.271	4.69	0.76	1.2	98.8	0.0	1.88	0.76	0.86	3.66	3.3	0.003	0.69	0.0	0.04	13.43	0.00	2.430	7.30	1.39	1.4	98.6	0.0	1.39	2.64	0.76	0.89	3.74	14777	1763	16	0	29	0	0	logfile
✔	7QNC	14074	2024-12-31	2021-12-20	2.9	3.35	—	3.1	0.003	0.58	0.0	0.05	12.80	0.01	2.276	3.01	0.48	1.7	98.3	0.0	0.92	0.79	0.88	4.62	3.1	0.005	0.76	0.0	0.05	14.09	0.00	2.389	6.94	1.73	1.3	98.7	0.0	1.67	1.19	0.79	0.91	4.39	15861	1881	19	0	39	0	0	logfile
✔	7WCK	32423	2024-12-27	2021-12-20	3.49	3.79	—	3.6	0.008	1.35	1.0	0.07	13.91	0.01	2.057	11.02	0.28	7.6	90.7	1.7	-3.09	0.67	0.79	2.16	3.6	0.004	0.83	0.0	0.05	14.91	0.00	2.531	14.32	1.97	8.1	91.4	0.5	-2.25	0.46	0.68	0.82	2.17	3245	416	3	0	0	0	0	logfile
✔	7WCU	32429	2024-12-27	2021-12-20	3.09	3.27	—	3.2	0.009	1.15	0.0	0.06	13.76	0.01	2.289	6.61	0.29	7.8	92.2	0.0	-2.63	0.61	0.82	3.98	3.2	0.003	0.70	0.0	0.05	15.54	0.01	2.549	9.76	3.43	7.1	92.9	0.0	-2.14	0.49	0.61	0.83	3.06	3248	416	3	0	0	0	0	logfile
✔	7QLA	14066	2024-12-27	2021-12-20	3.85	3.91	3.77	3.9	0.003	0.62	0.0	0.04	13.83	0.00	2.117	13.19	0.00	6.4	93.6	0.0	-1.33	0.72	0.76	1.18	3.9	0.003	0.75	0.0	0.04	16.26	0.00	2.537	12.90	3.66	4.9	95.1	0.0	-0.71	0.52	0.73	0.77	1.64	6837	874	2	0	0	0	0	logfile
✔	7QL1	14060	2024-12-27	2021-12-19	3.34	3.41	3.13	3.4	0.011	2.01	0.0	0.10	11.06	0.01	2.654	0.29	0.00	7.5	92.5	0.0	-3.09	0.42	0.83	4.57	3.4	0.003	0.70	0.0	0.05	15.44	0.00	2.553	7.04	1.56	2.8	97.2	0.0	-2.45	1.64	0.36	0.79	4.26	1671	219	3	0	0	0	0	logfile
✔	7QL4	14063	2024-12-27	2021-12-19	3.2	3.36	2.99	3.5	0.011	1.86	0.0	0.10	12.28	0.01	2.511	0.28	0.00	8.3	91.7	0.0	-1.77	0.26	0.51	0.51	3.4	0.003	0.61	0.0	0.05	14.94	0.01	2.384	6.65	1.26	0.9	99.1	0.0	-1.86	3.11	0.30	0.72	3.23	7074	456	6	0	0	0	3606	logfile
✔	7T9L	25761	2024-12-27	2021-12-19	2.66	3.24	—	3.1	0.006	0.96	0.0	0.06	14.12	0.01	2.276	3.89	0.14	2.8	97.2	0.0	-1.53	0.78	0.84	3.31	3.1	0.004	0.72	0.0	0.05	16.60	0.00	2.417	7.95	2.85	2.4	97.6	0.0	1.39	2.13	0.77	0.85	3.14	6567	796	4	0	7	0	0	logfile
✔	7QL2	14061	2024-12-27	2021-12-19	2.95	2.96	2.65	3.1	0.010	2.11	2.0	0.11	10.98	0.01	2.674	0.00	0.00	7.6	92.4	0.0	-2.82	0.30	0.74	4.50	3.4	0.003	0.59	0.0	0.05	12.42	0.00	2.628	3.50	1.48	13.2	86.8	0.0	-3.47	1.15	0.24	0.74	4.90	2286	150	3	0	0	0	1179	logfile
✔	7QKU	14053	2024-12-27	2021-12-19	2.57	2.42	2.48	2.7	0.011	1.83	5.0	0.10	11.69	0.01	2.516	0.28	0.00	5.2	94.8	0.0	-1.72	0.47	0.88	5.27	2.7	0.004	0.69	0.0	0.05	17.50	0.00	2.551	3.55	1.52	3.9	96.1	0.0	-2.25	3.44	0.47	0.92	5.61	3456	453	6	0	0	0	0	logfile
✔	7QKX	14056	2024-12-27	2021-12-19	3.16	3.10	2.99	3.2	0.011	1.82	0.0	0.09	10.51	0.01	2.523	0.00	0.00	3.3	96.7	0.0	-1.48	0.39	0.79	6.00	3.2	0.002	0.56	0.0	0.05	12.49	0.00	2.474	2.49	0.26	2.8	97.2	0.0	-1.89	0.85	0.44	0.86	5.71	6822	438	6	0	0	0	3480	logfile
✔	7T9G	25757	2024-12-30	2021-12-19	2.83	3.04	2.97	3.0	0.003	0.55	0.0	0.08	12.68	0.00	2.023	5.64	0.00	4.1	95.9	0.0	1.69	0.67	0.87	3.83	3.0	0.004	0.57	0.0	0.08	14.87	0.00	2.048	4.25	1.56	4.3	95.7	0.0	1.76	1.26	0.68	0.89	3.69	13649	890	6	0	4	5	6958	logfile
✔	7T9F	25756	2024-12-30	2021-12-19	3.23	3.51	3.49	3.5	0.004	0.84	0.0	0.09	13.18	0.00	1.988	5.27	0.28	3.6	96.4	0.0	0.16	0.64	0.80	3.49	3.5	0.003	0.61	0.0	0.08	14.93	0.00	2.348	8.20	0.85	4.1	95.9	0.0	1.13	0.53	0.65	0.84	3.46	13640	890	2	0	0	0	6958	logfile

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