Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WED	32447	2024-12-27	2021-12-23	3.5	3.62	—	3.7	0.003	0.70	0.0	0.05	13.75	0.01	2.285	7.13	0.00	8.2	91.8	0.0	-1.64	0.57	0.77	2.25	3.6	0.003	0.65	0.0	0.04	16.75	0.01	2.567	5.31	3.00	6.1	93.9	0.0	-1.11	1.13	0.56	0.78	2.51	3358	431	3	0	0	0	0	logfile
✔	7Qo9	14087	2024-12-29	2021-12-23	3.88	4.22	—	4.1	0.004	0.76	6.0	0.06	16.66	0.01	2.179	10.13	1.29	9.2	90.3	0.5	-1.18	0.68	0.78	1.87	4.1	0.018	0.95	0.0	0.05	16.90	0.01	2.353	11.12	2.18	11.6	88.2	0.3	-1.65	1.16	0.68	0.79	1.80	9180	1166	6	0	9	3	0	logfile
✔	7WEE	32448	2024-12-27	2021-12-23	4.0	4.09	—	4.1	0.005	0.72	0.0	0.04	12.68	0.01	2.116	8.35	0.00	4.5	95.5	0.0	-1.60	0.48	0.80	—	4.0	0.005	0.77	0.0	0.05	15.44	0.00	2.492	9.71	2.70	9.5	90.5	0.0	-1.75	0.46	0.47	0.81	—	3350	429	3	0	0	0	0	logfile
✔	7TCi	25813	2024-12-31	2021-12-23	3.9	4.11	—	4.1	0.006	0.62	0.0	0.04	13.44	0.00	2.282	6.98	2.95	2.2	97.8	0.0	2.98	0.64	0.81	1.85	4.1	0.003	0.66	0.0	0.04	16.16	0.00	2.383	8.00	5.03	2.7	97.3	0.0	2.15	1.30	0.65	0.79	1.51	15084	1916	16	0	16	0	0	logfile
✔	7WEF	32449	2024-12-27	2021-12-23	3.8	3.60	—	3.9	0.003	0.62	0.0	0.04	12.72	0.00	2.239	8.92	0.00	7.5	92.5	0.0	-1.27	0.53	0.76	2.61	3.8	0.004	0.65	0.0	0.04	14.93	0.00	2.521	5.23	2.79	7.0	93.0	0.0	-1.42	1.15	0.53	0.76	2.00	3328	432	3	0	0	0	0	logfile
✔	7WE6	32440	2024-12-27	2021-12-22	3.2	3.87	—	3.4	0.007	0.91	0.0	0.05	18.66	0.01	2.152	6.70	5.96	6.8	93.2	0.0	-3.43	0.90	0.85	2.16	3.3	0.003	0.62	0.0	0.04	18.04	0.00	2.373	6.32	3.67	6.1	93.9	0.0	-0.40	1.20	0.91	0.87	1.90	48324	6209	26	164	0	0	0	logfile
✔	7TBW	25800	2024-12-31	2021-12-22	3.1	3.10	2.87	3.2	0.003	0.62	0.0	0.04	14.88	0.00	2.101	8.64	1.23	5.2	94.8	0.0	-2.02	0.67	0.79	1.46	3.2	0.003	0.66	0.0	0.04	15.12	0.00	1.987	8.41	2.27	6.2	93.8	0.0	0.40	0.71	0.71	0.87	2.33	15338	1928	4	0	14	0	0	logfile
✔	7TBH	25799	2024-12-28	2021-12-22	2.3	3.49	—	2.8	0.001	0.43	0.0	0.03	8.12	0.00	2.141	6.17	0.43	7.8	91.4	0.8	0.80	0.78	0.76	0.52	2.8	0.003	0.69	0.0	0.04	13.73	0.00	2.498	6.29	0.73	2.9	96.7	0.4	2.92	0.91	0.81	0.86	2.62	51768	6288	48	0	0	0	0	logfile
✔	7TBY	25801	2024-12-30	2021-12-22	4.0	4.05	3.80	3.9	0.003	0.61	0.0	0.04	15.63	0.00	2.155	7.36	0.00	5.0	95.0	0.0	-2.45	0.70	0.79	—	3.9	0.002	0.66	0.0	0.04	14.85	0.00	2.456	7.01	2.44	5.5	94.5	0.0	0.50	1.06	0.71	0.82	—	13281	1788	4	0	10	0	0	logfile
✔	7TC0	25803	2024-12-30	2021-12-22	3.1	3.02	2.78	3.2	0.003	0.59	3.0	0.04	15.73	0.01	2.141	8.24	2.49	4.1	95.9	0.0	-1.78	0.74	0.81	1.67	3.1	0.004	0.67	0.0	0.04	14.92	0.00	2.139	5.75	3.05	5.6	94.4	0.0	0.77	1.30	0.77	0.89	1.99	13809	1781	4	0	11	0	0	logfile
✔	7TBZ	25802	2024-12-30	2021-12-22	4.3	4.56	4.01	4.0	0.002	0.56	0.0	0.04	14.93	0.00	2.207	6.66	0.00	3.8	96.2	0.1	-2.61	0.70	0.77	—	4.0	0.003	0.68	0.0	0.04	12.26	0.00	2.448	8.22	0.08	5.7	94.3	0.0	0.22	2.66	0.72	0.82	—	13275	1788	4	0	10	0	0	logfile
✔	7TB3	25791	2024-12-27	2021-12-21	2.57	3.30	—	3.1	0.002	0.41	0.0	0.03	9.42	0.00	2.212	4.32	1.06	9.5	90.1	0.4	0.76	0.74	0.74	1.78	3.0	0.003	0.65	0.0	0.04	15.04	0.00	2.382	6.42	1.21	2.7	97.3	0.0	3.11	0.95	0.74	0.85	2.09	48000	5832	24	0	0	0	0	logfile
✔	7TBF	25797	2024-12-27	2021-12-21	3.1	3.60	3.16	3.4	0.008	0.87	0.0	0.05	13.38	0.01	2.064	6.47	0.00	14.9	84.6	0.5	-3.53	0.83	0.81	3.20	3.4	0.003	0.75	0.0	0.04	15.24	0.00	2.453	5.77	3.16	13.4	86.2	0.5	-2.52	0.49	0.83	0.85	2.93	6617	857	6	0	2	0	0	logfile
✔	7TAW	25788	2024-12-28	2021-12-21	2.7	3.38	—	3.2	0.003	0.67	0.0	0.04	16.07	0.01	2.234	7.30	0.06	4.5	95.5	0.0	-1.53	0.80	0.76	2.53	3.2	0.003	0.67	0.0	0.04	17.83	0.00	2.385	10.42	1.05	5.1	94.9	0.0	-0.37	1.27	0.78	0.82	2.25	51399	6242	24	160	0	0	0	logfile
✔	7TAS	25783	2024-12-27	2021-12-21	3.2	3.49	3.25	3.4	0.013	1.50	0.0	0.09	11.33	0.01	2.452	3.63	1.69	3.9	96.1	0.0	-1.01	0.68	0.83	4.31	3.4	0.003	0.66	0.0	0.04	13.72	0.00	2.556	3.80	2.70	3.7	96.3	0.0	0.04	0.53	0.66	0.86	3.95	3147	417	4	0	3	0	0	logfile
✔	7WDK	32438	2024-12-28	2021-12-21	3.05	3.04	—	3.1	0.004	0.74	0.0	0.05	14.65	0.01	2.201	14.24	0.51	7.8	92.2	0.0	-1.03	0.58	0.65	2.10	3.1	0.005	0.75	0.0	0.05	16.25	0.01	2.445	10.91	1.85	7.4	92.6	0.0	-1.24	0.33	0.59	0.66	1.88	9461	1215	2	0	0	0	0	logfile
✔	7TAN	25777	2024-12-30	2021-12-21	3.0	2.95	—	3.1	0.003	0.47	0.0	0.03	27.16	0.00	2.287	3.25	0.00	2.8	97.2	0.0	2.18	0.82	0.85	2.22	3.1	0.004	0.52	0.0	0.03	27.71	0.00	2.417	2.33	1.56	2.1	97.9	0.0	2.24	0.33	0.84	0.87	1.93	12119	768	12	294	0	0	0	logfile
✔	7WD8	32434	2024-12-27	2021-12-21	4.3	3.48	—	3.5	0.002	0.51	0.0	0.04	6.43	0.00	2.246	8.80	0.00	4.1	95.7	0.2	-0.96	0.60	0.61	—	3.5	0.003	0.71	0.0	0.04	12.43	0.00	2.558	10.69	0.00	4.5	95.3	0.2	-0.06	1.60	0.63	0.66	—	4029	524	4	0	0	0	0	logfile
✔	7WCU	32429	2024-12-27	2021-12-20	3.09	3.27	—	3.2	0.009	1.15	0.0	0.06	13.76	0.01	2.289	6.61	0.29	7.8	92.2	0.0	-2.63	0.61	0.82	3.98	3.2	0.003	0.70	0.0	0.05	15.54	0.01	2.549	9.76	3.43	7.1	92.9	0.0	-2.14	0.49	0.61	0.83	3.06	3248	416	3	0	0	0	0	logfile
✔	7WCK	32423	2024-12-27	2021-12-20	3.49	3.79	—	3.6	0.008	1.35	1.0	0.07	13.91	0.01	2.057	11.02	0.28	7.6	90.7	1.7	-3.09	0.67	0.79	2.16	3.6	0.004	0.83	0.0	0.05	14.91	0.00	2.531	14.32	1.97	8.1	91.4	0.5	-2.25	0.46	0.68	0.82	2.17	3245	416	3	0	0	0	0	logfile

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