Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7FDH	31543	2024-12-27	2021-07-16	3.72	3.93	—	3.8	0.004	0.73	0.0	0.05	14.49	0.00	2.145	13.20	0.29	3.8	96.2	0.0	-2.91	0.72	0.81	2.27	3.8	0.004	0.74	0.0	0.04	15.93	0.00	2.442	10.44	1.87	3.2	96.8	0.0	0.72	0.63	0.71	0.80	1.95	6488	791	4	0	5	0	0	logfile
✔	7FDG	31542	2024-12-27	2021-07-16	3.69	4.43	—	4.3	0.007	0.85	0.0	0.05	16.00	0.01	2.061	23.62	0.29	7.4	92.6	0.0	-3.38	0.59	0.78	1.13	4.3	0.003	0.82	0.0	0.05	17.51	0.00	2.306	14.31	1.75	4.1	95.9	0.0	-0.48	0.78	0.57	0.75	1.55	6459	791	4	0	5	0	0	logfile
✔	7FDB	31539	2024-12-30	2021-07-16	4.8	5.04	4.73	8.8	0.003	0.57	0.0	0.04	13.84	0.00	1.761	12.61	0.00	7.3	92.6	0.0	-0.78	0.66	0.32	—	4.7	0.004	0.88	0.0	0.05	13.91	0.01	2.271	22.36	0.01	5.8	94.1	0.0	-1.62	2.60	0.77	0.65	—	64497	8295	31	0	0	0	0	logfile
✔	7FDA	31538	2024-12-30	2021-07-16	4.2	3.94	—	3.5	0.003	0.56	0.0	0.04	11.99	0.00	1.871	8.71	0.00	5.8	94.2	0.0	-0.86	0.72	0.63	—	3.1	0.003	0.76	0.0	0.04	13.27	0.00	2.333	12.38	0.01	4.3	95.7	0.0	-0.87	1.83	0.76	0.77	—	64497	8295	31	0	0	0	0	logfile
✔	7FDK	31546	2024-12-27	2021-07-16	3.69	3.82	—	3.8	0.008	0.88	0.0	0.05	15.52	0.01	2.080	18.21	0.29	13.2	86.7	0.1	-4.54	0.61	0.79	1.60	3.8	0.003	0.73	0.0	0.04	16.31	0.01	2.537	9.62	1.89	7.1	92.9	0.0	-0.83	0.66	0.60	0.76	1.38	6449	791	4	0	3	0	0	logfile
✔	7RGQ	24454	2024-12-30	2021-07-15	3.9	3.65	—	3.7	0.013	1.97	9.0	0.09	19.50	0.01	2.357	2.12	2.74	6.9	92.4	0.7	-1.98	0.56	0.81	3.07	3.7	0.005	0.68	0.0	0.04	18.62	0.00	2.301	9.36	2.20	6.6	93.4	0.0	-1.12	1.77	0.54	0.81	2.43	59832	3848	16	0	40	0	29544	logfile
✔	7P6D	13226	2024-12-27	2021-07-15	3.3	3.43	3.17	3.5	0.003	0.66	0.0	0.05	11.41	0.00	2.575	2.25	0.00	2.7	97.3	0.0	-2.54	0.55	0.77	3.72	3.5	0.005	0.71	0.0	0.05	13.38	0.00	2.516	2.70	2.02	9.0	91.0	0.0	-3.11	2.42	0.47	0.82	4.30	4340	575	5	0	0	0	0	logfile
✔	7RGD	24448	2024-12-31	2021-07-15	3.0	2.86	—	2.9	0.013	2.00	16.0	0.10	19.22	0.01	2.298	2.66	3.19	6.6	93.1	0.3	-1.64	0.57	0.85	4.68	2.9	0.003	0.63	0.0	0.04	18.17	0.00	2.247	3.72	1.61	5.3	94.7	0.0	0.56	1.37	0.57	0.87	3.87	64424	4152	16	0	40	0	31840	logfile
✔	7FCV	31532	2024-12-31	2021-07-15	2.9	3.53	—	3.2	0.008	1.04	0.0	0.06	12.12	0.01	2.271	4.38	0.00	8.4	91.6	0.0	-3.29	0.62	0.81	3.28	3.2	0.003	0.68	0.0	0.04	13.96	0.00	2.541	6.84	1.11	6.6	93.4	0.0	0.61	1.67	0.62	0.82	2.20	15143	1848	8	0	7	0	0	logfile
✔	7P6A	13223	2024-12-27	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.006	0.74	0.0	0.06	14.08	0.00	2.571	4.76	0.64	4.7	95.3	0.0	-2.53	0.83	0.54	0.90	7.92	4166	540	10	0	0	76	0	logfile
✔	7P65	13218	2024-12-27	2021-07-15	2.7	2.87	2.60	2.8	0.004	0.63	0.0	0.05	12.60	0.00	2.381	2.01	0.00	2.8	97.2	0.0	-2.90	0.55	0.86	5.81	2.8	0.006	0.65	0.0	0.05	15.70	0.00	2.618	4.73	1.47	3.3	96.7	0.0	-2.89	0.48	0.49	0.88	5.16	4145	550	5	0	0	0	0	logfile
✔	7P6C	13225	2024-12-28	2021-07-15	2.5	2.04	2.40	2.2	0.005	0.80	0.0	0.06	15.34	0.00	2.284	2.77	0.43	2.8	97.2	0.0	-3.05	0.43	0.86	7.56	2.2	0.003	0.61	0.0	0.05	17.13	0.00	2.492	3.49	1.40	3.4	96.6	0.0	-2.65	0.91	0.44	0.89	7.22	8120	1080	10	0	0	0	0	logfile
✔	7P67	13220	2024-12-28	2021-07-15	3.1	3.08	2.94	3.2	0.007	1.06	0.0	0.09	11.98	0.00	2.338	3.61	0.00	4.7	95.3	0.0	-3.19	0.49	0.83	4.12	3.1	0.005	0.73	0.0	0.05	15.09	0.00	2.482	6.49	2.37	5.3	94.7	0.0	-3.31	0.94	0.44	0.84	4.66	8120	1080	10	0	0	0	0	logfile
✔	7P6E	13227	2024-12-28	2021-07-15	3.4	3.40	3.47	4.1	0.009	0.96	0.0	0.06	8.26	0.01	2.358	3.99	0.00	5.9	94.1	0.0	-4.80	0.54	0.80	4.38	4.1	0.004	0.70	0.0	0.05	12.81	0.00	2.555	7.13	2.53	4.1	95.9	0.0	-4.14	2.66	0.50	0.79	4.06	8090	1050	10	0	0	0	0	logfile
✔	7RGL	24451	2024-12-28	2021-07-15	2.4	2.51	—	2.4	0.013	1.20	0.0	0.06	16.03	0.01	2.317	3.77	3.66	3.7	96.2	0.2	-1.40	0.65	0.88	5.76	2.5	0.003	0.55	0.0	0.04	15.83	0.00	2.460	2.32	0.83	4.0	96.0	0.0	0.88	0.96	0.66	0.89	5.41	50936	3328	16	0	16	0	25408	logfile
✔	7RGi	24450	2024-12-26	2021-07-15	3.6	3.55	—	3.6	0.011	1.77	4.0	0.09	15.12	0.01	2.432	1.57	1.84	6.1	93.8	0.1	-2.07	0.57	0.78	2.45	3.5	0.003	0.60	0.0	0.04	15.88	0.00	2.319	8.19	2.50	6.4	93.6	0.0	-0.61	1.34	0.55	0.77	2.09	43712	2856	16	0	16	0	21752	logfile
✔	7P68	13221	2024-12-28	2021-07-15	2.9	3.23	2.85	3.1	0.006	0.90	0.0	0.07	12.92	0.00	2.430	4.45	0.00	3.3	96.7	0.0	-3.06	0.46	0.80	3.76	3.1	0.003	0.81	0.0	0.05	16.11	0.00	2.377	7.82	3.87	5.3	94.7	0.0	-3.40	1.49	0.40	0.82	3.45	8120	1080	10	0	0	0	0	logfile
✔	7P66	13219	2024-12-27	2021-07-15	3.0	3.09	2.70	3.2	0.004	0.66	0.0	0.06	12.13	0.00	2.388	4.21	0.00	3.8	96.2	0.0	-2.50	0.48	0.82	4.06	3.2	0.008	0.71	0.0	0.05	15.27	0.00	2.552	5.65	2.37	7.0	93.0	0.0	-2.97	1.33	0.48	0.85	4.29	4060	540	5	0	0	0	0	logfile
✔	7P6B	13224	2024-12-27	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.005	0.69	0.0	0.05	16.94	0.00	2.563	5.89	1.29	4.7	95.3	0.0	-2.34	0.54	0.49	0.88	6.57	4060	540	5	0	0	0	0	logfile
✔	7RFi	24443	2024-12-28	2021-07-14	2.6	2.65	—	2.6	0.014	1.86	8.0	0.11	19.32	0.01	2.335	3.53	1.61	4.0	95.6	0.4	-1.71	0.67	0.87	5.21	2.7	0.003	0.62	0.0	0.04	18.57	0.00	2.376	2.35	1.35	3.1	96.9	0.0	0.41	0.62	0.65	0.88	4.92	52194	3376	16	0	32	0	25698	logfile

• ← previous
• Page 286 of 409
• next →