Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VZo	43684	2024-12-27	2024-02-12	2.49	2.66	2.50	2.7	0.013	1.82	1.0	0.10	14.97	0.03	2.347	6.25	3.67	4.0	96.0	0.0	-2.36	0.56	0.81	3.92	2.6	0.005	0.64	0.0	0.05	15.30	0.01	2.597	5.00	1.54	2.6	97.4	0.0	1.92	0.50	0.67	0.89	4.03	4796	615	4	0	1	0	0	logfile
✔	8RZ7	19605	2024-12-30	2024-02-12	3.37	2.54	3.44	2.9	0.012	1.45	11.0	0.10	19.24	0.01	1.674	19.28	3.61	5.7	94.3	0.0	-1.14	0.78	0.80	1.07	2.2	0.004	0.76	0.0	0.04	19.94	0.00	1.870	14.65	4.46	3.8	96.2	0.0	0.09	1.41	0.74	0.74	1.10	13544	1593	6	38	4	0	0	logfile
✔	8YB4	39108	2024-12-28	2024-02-11	3.1	3.56	3.21	3.4	0.004	0.62	0.0	0.04	18.65	0.02	2.205	7.05	0.33	4.6	95.4	0.0	0.26	0.68	0.74	1.67	3.4	0.003	0.61	0.0	0.04	18.28	0.00	2.438	4.36	3.31	3.9	96.0	0.1	1.01	0.90	0.69	0.83	1.75	8400	1067	5	0	2	0	0	logfile
✔	8YAR	39105	2024-12-31	2024-02-09	3.6	4.58	3.79	3.9	0.004	0.69	1.0	0.04	15.79	0.01	2.232	8.64	0.06	3.0	97.0	0.0	1.04	0.73	0.82	1.32	3.9	0.003	0.64	0.0	0.04	16.23	0.00	2.466	8.78	1.21	2.8	97.2	0.0	0.89	1.58	0.74	0.84	1.11	15482	1960	11	0	5	0	0	logfile
✔	8YAL	39102	2024-12-31	2024-02-09	3.1	4.01	3.08	3.4	0.004	0.68	1.0	0.05	15.43	0.01	2.212	8.50	0.12	3.2	96.8	0.0	0.40	0.74	0.80	3.36	3.4	0.002	0.56	0.0	0.04	15.95	0.00	2.462	6.52	0.67	2.5	97.5	0.0	1.13	1.15	0.75	0.86	2.80	15498	1960	11	0	5	0	0	logfile
✔	8YAJ	39100	2024-12-31	2024-02-09	3.2	4.14	3.27	3.6	0.006	0.70	0.0	0.05	15.60	0.00	2.209	7.97	0.00	3.6	96.4	0.0	0.53	0.75	0.83	2.69	3.6	0.002	0.59	0.0	0.04	15.68	0.00	2.477	7.18	0.66	2.8	97.2	0.0	0.77	1.13	0.75	0.86	2.51	15483	1963	11	0	5	0	0	logfile
✔	8YAA	39093	2024-12-27	2024-02-08	3.34	3.03	3.28	3.1	0.006	0.87	0.0	0.06	21.92	0.01	2.131	9.29	0.13	11.0	89.0	0.0	-4.08	0.78	0.85	3.54	3.1	0.004	0.72	0.0	0.05	15.69	0.00	2.444	5.91	2.11	9.4	90.6	0.0	-3.94	0.94	0.79	0.86	2.93	6985	844	17	0	36	0	0	logfile
✔	8VYG	43660	2024-12-27	2024-02-08	3.1	3.18	3.20	3.3	0.010	1.22	0.0	0.07	10.29	0.00	2.515	0.48	0.30	2.9	97.1	0.0	0.68	0.51	0.68	2.78	3.2	0.003	0.65	0.0	0.04	15.84	0.00	2.538	5.77	1.79	2.5	97.5	0.0	0.09	1.48	0.54	0.77	2.67	3204	416	4	0	1	0	0	logfile
✔	8VYF	43659	2024-12-27	2024-02-08	3.2	3.37	3.23	3.4	0.010	1.27	0.0	0.08	11.20	0.00	2.519	0.21	0.00	3.1	96.9	0.0	1.25	0.68	0.81	4.82	3.4	0.006	0.67	0.0	0.05	12.54	0.00	2.537	2.75	2.59	3.1	96.9	0.0	0.56	0.53	0.68	0.88	5.21	5132	715	9	0	12	0	0	logfile
✔	8VY9	43650	2024-12-28	2024-02-07	2.88	2.27	2.92	2.0	0.005	0.70	0.0	0.05	14.27	0.00	2.245	3.56	0.00	4.2	95.8	0.0	-0.69	0.78	0.80	3.74	2.1	0.004	0.61	0.0	0.04	16.33	0.00	2.413	6.43	2.21	5.4	94.6	0.0	1.04	0.49	0.79	0.81	3.30	8668	1134	6	0	2	0	0	logfile
✔	8RXS	19578	2024-12-31	2024-02-07	2.8	3.57	2.87	3.4	0.003	0.61	0.0	0.04	16.04	0.00	2.088	9.16	0.45	6.6	93.1	0.3	-1.73	0.65	0.78	3.22	3.4	0.004	0.68	0.0	0.04	16.57	0.00	2.339	4.49	1.36	7.8	92.0	0.2	-0.34	2.16	0.65	0.82	3.56	16267	1080	6	0	0	0	8245	logfile
✔	8RXK	19577	2024-12-30	2024-02-07	3.23	4.03	3.38	3.6	0.005	0.77	0.0	0.04	19.42	0.00	2.093	9.71	0.25	7.1	92.2	0.7	-0.95	0.72	0.83	2.64	3.6	0.003	0.74	0.0	0.04	19.67	0.00	2.454	7.14	2.13	6.6	93.0	0.4	-0.14	0.83	0.71	0.85	2.37	12162	1446	7	48	3	0	0	logfile
✔	8VY7	43647	2024-12-28	2024-02-07	2.68	2.20	2.71	2.0	0.005	0.71	0.0	0.05	14.10	0.00	2.245	3.71	0.00	3.5	96.5	0.0	-0.25	0.80	0.82	3.65	2.0	0.003	0.60	0.0	0.04	15.73	0.00	2.489	6.57	1.71	3.4	96.6	0.0	1.29	0.97	0.81	0.82	3.31	8811	1136	6	0	2	0	0	logfile
✔	8VXT	43639	2024-12-30	2024-02-06	4.25	2.73	4.22	2.2	0.003	0.71	0.0	0.08	14.08	0.01	2.224	7.78	0.00	3.5	96.5	0.0	0.59	0.65	0.63	—	2.0	0.003	0.70	0.0	0.04	14.63	0.00	2.389	11.89	0.00	4.4	95.6	0.0	1.58	0.84	0.67	0.67	—	13896	1740	12	0	6	0	0	logfile
✔	8Y8K	39050	2024-12-28	2024-02-06	2.89	3.09	2.92	3.2	0.003	0.54	0.0	0.04	16.02	0.01	2.248	3.63	2.28	2.5	97.5	0.0	1.68	0.61	0.80	1.21	3.1	0.004	0.54	0.0	0.04	16.48	0.01	2.612	3.08	2.62	2.5	97.5	0.0	1.91	0.31	0.57	0.79	1.38	8052	1028	2	0	0	0	0	logfile
✔	8Y9B	39072	2024-12-30	2024-02-06	3.2	3.27	3.08	3.3	0.004	0.54	0.0	0.05	13.74	0.00	2.077	5.44	0.00	3.3	96.7	0.0	0.47	0.71	0.82	3.00	3.3	0.002	0.46	0.0	0.04	15.62	0.00	2.135	3.70	0.99	2.7	97.2	0.1	1.40	0.38	0.72	0.85	2.57	13380	1672	3	0	1	0	0	logfile
✔	8Y9C	39073	2024-12-30	2024-02-06	3.0	3.24	3.07	3.2	0.003	0.49	0.0	0.04	14.35	0.00	2.211	7.37	0.46	3.7	96.3	0.0	1.00	0.71	0.78	2.73	3.2	0.004	0.63	0.0	0.05	16.33	0.00	2.284	5.83	2.37	3.6	96.4	0.0	0.83	0.66	0.73	0.82	2.95	13400	1674	3	0	1	0	0	logfile
✔	8Y94	39069	2024-12-28	2024-02-06	3.29	3.74	3.42	3.7	0.002	0.46	0.0	0.03	9.27	0.00	2.295	5.05	3.15	2.1	97.9	0.0	-1.50	0.52	0.64	1.26	3.7	0.003	0.69	0.0	0.04	15.05	0.00	2.532	11.98	2.42	2.8	97.2	0.0	0.92	1.17	0.59	0.78	1.00	9032	1130	2	0	0	0	0	logfile
✔	8VXY	43643	2024-12-30	2024-02-06	3.19	3.47	3.32	3.5	0.003	0.81	0.0	0.06	16.14	0.00	2.215	14.40	0.00	4.8	95.2	0.0	-0.15	0.61	0.62	1.03	3.5	0.003	0.67	0.0	0.04	18.47	0.00	2.528	15.19	1.20	4.3	95.7	0.0	-0.71	1.42	0.65	0.67	0.92	12324	1406	5	62	1	0	0	logfile
✔	8Y90	39065	2024-12-28	2024-02-06	3.15	3.57	3.32	3.5	0.003	0.57	0.0	0.03	11.77	0.00	2.167	8.97	6.09	2.7	97.3	0.0	-1.83	0.50	0.63	1.25	3.5	0.003	0.67	0.0	0.04	14.92	0.00	2.345	10.47	3.57	3.8	96.2	0.0	0.69	1.18	0.60	0.78	1.46	9058	1130	3	0	3	5	0	logfile

• ← previous
• Page 30 of 409
• next →