Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MJL	23877	2024-12-27	2021-04-20	2.95	3.62	—	3.3	0.005	0.82	0.0	0.05	12.25	0.01	2.351	2.77	0.00	3.9	96.1	0.0	-0.85	0.80	0.87	3.95	3.3	0.003	0.57	0.0	0.04	14.76	0.00	2.447	4.68	1.13	2.8	97.2	0.0	0.36	0.42	0.80	0.87	3.60	4788	621	4	0	1	0	0	logfile
✔	7MJP	23881	2024-12-31	2021-04-20	4.2	4.40	—	4.3	0.008	1.11	0.0	0.07	10.54	0.01	1.477	2.76	0.00	9.1	90.9	0.0	-1.16	0.51	0.65	—	4.3	0.002	0.62	0.0	0.05	8.32	0.00	2.518	0.24	0.00	7.4	92.6	0.0	-0.39	1.34	0.55	0.68	—	14163	2818	10	0	8	0	0	logfile
✔	7MJS	23883	2024-12-27	2021-04-20	3.03	3.31	3.09	3.2	0.005	0.76	1.0	0.06	14.03	0.01	2.228	8.63	0.00	4.7	95.3	0.0	-3.02	0.63	0.83	3.58	3.2	0.004	0.61	0.0	0.04	15.55	0.00	2.496	7.81	3.21	4.3	95.7	0.0	0.26	0.39	0.63	0.85	2.84	5536	703	4	0	3	0	0	logfile
✔	7MJi	23874	2024-12-27	2021-04-20	2.81	3.32	—	3.2	0.006	0.81	0.0	0.05	12.49	0.01	2.367	2.85	0.00	2.8	97.2	0.0	-0.83	0.56	0.84	4.52	3.2	0.003	0.58	0.0	0.04	15.08	0.00	2.546	5.90	2.21	2.2	97.8	0.0	-0.02	1.43	0.56	0.85	4.66	2522	320	3	0	1	0	0	logfile
✔	7MJQ	23882	2024-12-31	2021-04-20	4.2	4.29	—	4.2	0.009	1.55	0.0	0.15	11.99	0.01	1.552	6.01	0.00	9.4	90.6	0.0	-1.25	0.52	0.66	—	4.2	0.005	0.89	0.0	0.05	10.81	0.00	2.367	1.47	0.00	15.4	84.5	0.1	-2.10	1.84	0.60	0.76	—	14976	2982	13	0	10	0	0	logfile
✔	7oAG	12776	2024-12-28	2021-04-19	3.4	3.78	—	3.4	0.007	0.67	0.0	0.05	10.39	0.00	2.025	5.52	0.00	5.3	94.7	0.0	-0.35	0.81	0.88	3.22	3.4	0.006	0.76	0.0	0.05	13.39	0.00	2.453	6.76	0.39	0.3	99.7	0.0	-0.39	2.12	0.82	0.91	4.45	7600	1000	25	0	0	0	0	logfile
✔	7oAE	12775	2024-12-30	2021-04-19	2.0	2.65	—	2.2	0.008	0.53	0.0	0.05	9.44	0.00	2.440	0.99	0.00	2.6	97.4	0.0	0.22	0.77	0.91	6.46	2.2	0.002	0.54	0.0	0.04	14.87	0.00	2.602	5.09	0.77	1.1	98.9	0.0	0.42	2.66	0.78	0.93	6.31	12768	1680	42	0	0	0	0	logfile
✔	7ENN	31217	2024-12-31	2021-04-18	2.8	3.21	—	3.1	0.006	0.68	0.0	0.04	25.22	0.00	2.127	7.99	0.00	4.5	95.4	0.1	-0.16	0.84	0.87	4.06	3.1	0.004	0.63	0.0	0.04	26.14	0.01	2.108	5.73	0.91	4.4	95.6	0.0	1.23	0.30	0.83	0.89	3.30	16319	1300	12	292	2	0	0	logfile
✔	7ENJ	31211	2024-12-29	2021-04-17	4.4	4.62	—	4.0	0.011	1.18	16.0	0.07	15.29	0.01	2.211	7.81	1.23	5.7	93.7	0.6	-2.67	0.75	0.49	—	4.1	0.003	0.67	0.0	0.04	14.11	0.00	2.396	9.64	0.00	4.6	95.3	0.1	1.25	0.74	0.82	0.68	—	57971	7340	27	0	21	0	0	logfile
✔	7Mi5	23840	2024-12-31	2021-04-16	3.57	3.95	—	3.9	0.010	1.47	4.0	0.06	21.22	0.01	1.662	35.40	11.95	9.4	90.5	0.1	-2.45	0.68	0.65	0.89	3.9	0.003	0.76	0.0	0.04	19.12	0.00	2.081	10.94	2.82	6.0	94.0	0.0	-0.10	2.11	0.75	0.78	1.33	15469	1785	14	60	7	0	0	logfile
✔	7Mi9	23843	2024-12-31	2021-04-16	3.89	3.92	—	3.7	0.006	0.91	1.0	0.05	24.16	0.01	2.008	38.70	2.08	13.2	86.3	0.6	-3.37	0.70	0.48	0.55	3.6	0.005	0.97	1.0	0.04	24.45	0.01	2.050	22.17	3.01	9.3	90.7	0.1	-2.38	2.53	0.75	0.61	1.13	15924	1554	10	170	0	0	0	logfile
✔	7ENG	31210	2024-12-27	2021-04-16	3.59	3.86	—	3.8	0.007	0.83	0.0	0.05	17.37	0.00	2.204	14.32	0.36	7.4	92.6	0.0	-2.69	0.55	0.79	2.68	3.8	0.003	0.63	0.0	0.04	15.64	0.00	2.457	8.45	2.54	6.5	93.5	0.0	-1.94	1.61	0.54	0.78	2.26	4954	640	4	0	2	0	0	logfile
✔	7Mi8	23842	2024-12-30	2021-04-16	3.7	4.01	3.56	3.8	0.006	0.97	0.0	0.05	14.13	0.01	2.226	5.27	0.38	2.4	97.4	0.1	-3.11	0.79	0.84	2.27	3.9	0.003	0.72	0.0	0.04	16.41	0.00	2.516	7.69	2.43	3.6	96.4	0.0	0.95	0.82	0.81	0.85	1.40	7034	868	1	0	0	0	0	logfile
✔	7EN0	31197	2024-12-28	2021-04-15	2.97	3.38	3.13	3.4	0.007	1.08	0.0	0.05	17.39	0.01	2.299	8.99	4.80	4.2	95.1	0.6	-3.26	0.50	0.77	2.43	3.3	0.003	0.62	0.0	0.04	17.02	0.00	2.609	8.31	1.31	3.6	96.4	0.0	1.69	0.46	0.58	0.82	2.31	7239	939	6	0	6	0	0	logfile
✔	7EMF	31191	2024-12-30	2021-04-13	3.5	3.62	—	3.5	0.011	1.17	16.0	0.07	15.26	0.01	2.207	7.30	1.08	5.6	93.8	0.6	-2.65	0.74	0.71	1.83	3.5	0.003	0.67	0.0	0.04	16.96	0.00	2.221	8.70	2.38	5.0	94.9	0.1	1.14	1.33	0.80	0.80	1.61	62334	7916	29	0	2	0	0	logfile
✔	7o7L	12747	2024-12-26	2021-04-13	4.5	5.42	—	6.7	0.008	1.16	8.0	0.08	16.57	0.02	2.015	13.41	0.49	16.8	82.5	0.7	-5.47	0.80	0.63	—	6.7	0.003	0.87	0.0	0.05	14.84	0.01	2.381	18.20	0.04	12.7	87.1	0.2	-3.72	1.07	0.80	0.62	—	44614	5640	14	0	44	0	0	logfile
✔	7o7F	12746	2024-12-29	2021-04-13	3.15	3.42	3.19	3.4	0.004	0.64	0.0	0.04	14.02	0.00	1.932	7.93	0.16	2.5	97.5	0.0	0.48	0.70	0.77	2.29	3.4	0.004	0.65	0.0	0.04	15.83	0.00	2.477	7.93	2.34	2.6	97.4	0.0	0.17	0.52	0.68	0.74	2.06	11170	1420	7	0	0	0	0	logfile
✔	7o7o	12751	2024-12-26	2021-04-13	4.8	5.79	—	6.6	0.011	1.24	5.0	0.06	16.35	0.02	1.564	17.48	0.43	17.4	82.1	0.5	-5.42	0.81	0.69	—	6.6	0.004	0.88	0.0	0.05	14.40	0.01	2.422	22.85	0.02	13.6	86.2	0.1	-3.83	1.33	0.81	0.71	—	42642	5376	20	0	52	0	0	logfile
✔	7MGW	23830	2024-12-27	2021-04-13	3.5	3.79	—	4.0	0.003	0.64	0.0	0.04	13.53	0.00	2.292	9.19	1.40	2.9	97.1	0.0	-2.49	0.39	0.53	1.34	4.0	0.004	0.65	0.0	0.04	15.15	0.00	2.532	11.19	3.74	5.9	94.1	0.0	-0.93	1.00	0.59	0.76	1.38	6223	765	5	0	18	0	0	logfile
✔	7ELM	31185	2024-12-27	2021-04-12	2.88	3.11	—	2.9	0.005	0.78	0.0	0.05	17.11	0.01	1.839	6.41	0.40	6.1	93.9	0.0	-3.08	0.85	0.82	2.81	2.9	0.004	0.61	0.0	0.04	17.81	0.00	2.421	6.40	1.47	5.7	94.3	0.0	0.04	0.46	0.87	0.87	2.59	47399	6201	22	120	0	0	0	logfile

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