Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MLV	23911	2024-12-31	2021-04-29	4.1	4.82	—	3.9	0.005	1.02	0.0	0.06	15.50	0.01	2.168	5.10	0.00	7.1	92.9	0.0	-5.14	0.62	0.41	—	3.9	0.004	0.81	0.0	0.05	12.36	0.00	2.518	17.06	0.00	8.6	91.4	0.0	-3.19	1.68	0.70	0.69	—	15055	1919	16	0	22	0	0	logfile
✔	7oDF	12827	2024-12-27	2021-04-29	2.66	3.20	—	3.1	0.003	0.49	0.0	0.04	19.38	0.00	1.952	6.12	0.00	1.4	98.6	0.0	1.47	0.75	0.83	3.58	3.1	0.003	0.53	0.0	0.04	20.24	0.00	1.995	7.39	2.35	2.1	97.9	0.0	1.74	0.88	0.70	0.81	3.51	6847	703	7	78	2	5	0	logfile
✔	7oCY	12816	2024-12-28	2021-04-28	4.25	4.55	4.29	4.4	0.003	0.62	0.0	0.04	12.49	0.00	1.980	9.97	0.00	4.9	95.1	0.0	-0.08	0.73	0.77	—	4.4	0.003	0.67	0.0	0.04	12.70	0.00	2.407	8.40	0.00	2.8	97.2	0.0	0.94	1.14	0.74	0.78	—	7994	1243	3	0	0	0	0	logfile
✔	7EQ1	31254	2024-12-28	2021-04-28	3.3	2.26	—	2.0	0.003	0.58	0.0	0.04	13.83	0.00	2.113	10.24	0.00	6.5	93.5	0.0	-0.59	0.75	0.74	3.06	2.0	0.004	0.93	0.0	0.04	15.99	0.00	2.246	10.24	2.87	6.2	93.8	0.0	-0.20	0.33	0.75	0.77	2.58	8999	1150	5	0	0	0	0	logfile
✔	7ML0	23904	2024-12-30	2021-04-27	3.0	3.82	—	2.2	0.018	1.12	0.0	0.06	19.84	0.01	1.912	37.28	20.13	15.6	84.2	0.3	-3.87	0.62	0.63	2.22	2.2	0.004	0.83	0.0	0.05	18.42	0.00	2.017	13.97	3.81	7.9	92.0	0.1	-1.30	1.64	0.84	0.84	2.11	64214	7986	52	132	139	0	0	logfile
✔	7ML1	23905	2024-12-30	2021-04-27	4.0	4.59	—	2.6	0.005	0.66	0.0	0.04	16.75	0.00	1.767	25.40	12.14	8.8	91.1	0.1	-1.89	0.65	0.57	—	2.8	0.003	0.71	0.0	0.04	16.89	0.00	1.995	14.06	3.47	7.3	92.7	0.1	-0.86	0.66	0.85	0.78	—	64538	8076	56	114	142	0	0	logfile
✔	7ML4	23908	2024-12-30	2021-04-27	3.1	4.67	—	2.5	0.015	1.09	0.0	0.05	17.01	0.01	1.769	29.17	12.47	10.6	89.1	0.2	-2.14	0.58	0.51	1.65	2.4	0.003	0.69	0.0	0.04	16.69	0.00	2.032	11.99	2.17	7.1	92.9	0.1	-0.61	0.64	0.80	0.76	1.35	62733	7907	55	91	138	0	0	logfile
✔	7ML2	23906	2024-12-30	2021-04-27	3.4	4.68	—	3.4	0.008	1.14	0.0	0.06	15.23	0.01	1.825	40.30	0.09	13.1	86.7	0.2	-4.05	0.53	0.46	0.97	2.8	0.006	0.88	1.0	0.05	16.81	0.01	1.924	22.35	1.74	10.5	89.4	0.1	-1.87	1.27	0.76	0.69	0.85	64550	8082	55	112	140	0	0	logfile
✔	7ML7	23909	2024-12-29	2021-04-27	3.17	3.27	—	3.3	0.004	0.75	0.0	0.05	16.19	0.01	2.116	5.73	0.48	7.8	92.1	0.1	-3.39	0.74	0.81	2.84	3.3	0.003	0.61	0.0	0.04	17.02	0.00	2.023	6.38	3.23	6.8	93.2	0.0	-0.68	1.33	0.75	0.83	2.45	10913	1354	3	0	1	0	0	logfile
✔	7EPB	31236	2024-12-31	2021-04-26	3.1	3.55	—	3.4	0.004	0.62	0.0	0.06	13.84	0.00	2.292	8.87	0.08	4.5	95.5	0.0	-1.65	0.63	0.74	1.33	3.3	0.003	0.66	0.0	0.04	15.31	0.00	2.348	11.68	3.35	5.7	94.3	0.0	-0.35	0.59	0.66	0.80	1.81	13104	1794	6	0	2	0	0	logfile
✔	7EPD	31238	2024-12-31	2021-04-26	3.9	2.74	—	3.5	0.002	0.45	0.0	0.04	12.27	0.00	2.232	7.06	0.00	4.0	96.0	0.0	-2.46	0.69	0.63	0.57	3.5	0.003	0.62	0.0	0.04	14.39	0.00	2.553	10.89	3.85	5.2	94.8	0.0	-0.05	0.58	0.75	0.74	1.31	10710	1569	2	0	0	0	0	logfile
✔	7oCH	12807	2024-12-29	2021-04-26	3.14	3.53	3.21	3.2	0.003	0.54	0.0	0.04	15.97	0.00	2.072	3.99	3.80	6.6	93.4	0.0	-2.88	0.89	0.86	2.83	3.2	0.003	0.59	0.0	0.04	16.40	0.00	2.064	2.73	2.87	6.3	93.7	0.0	-0.03	0.47	0.91	0.90	2.65	9516	1181	2	0	2	0	0	logfile
✔	7EPC	31237	2024-12-31	2021-04-26	4.0	3.34	—	3.7	0.002	0.50	0.0	0.04	11.28	0.00	2.295	4.60	0.00	2.5	97.5	0.0	-2.98	0.62	0.48	—	3.7	0.003	0.69	0.0	0.04	14.86	0.00	2.597	5.87	2.87	4.5	95.5	0.0	-0.60	1.67	0.75	0.76	—	11216	1564	2	0	0	0	0	logfile
✔	7oCC	12803	2024-12-29	2021-04-26	3.4	2.93	—	3.3	0.010	0.76	0.0	0.05	19.50	0.00	2.143	5.09	0.39	3.1	96.9	0.0	-1.15	0.73	0.78	4.01	3.2	0.003	0.58	0.0	0.04	14.26	0.00	2.509	4.11	1.45	2.1	97.9	0.0	0.92	1.59	0.75	0.84	4.23	11202	1480	14	0	20	0	0	logfile
✔	7EPA	31235	2024-12-31	2021-04-26	3.6	4.08	—	3.9	0.002	0.48	0.0	0.04	11.03	0.00	2.274	5.74	0.00	3.3	96.7	0.0	-1.51	0.60	0.70	1.28	3.9	0.003	0.73	0.0	0.04	14.20	0.00	2.508	9.97	3.38	4.9	95.1	0.0	0.51	1.57	0.63	0.78	1.67	10635	1564	2	0	0	0	0	logfile
✔	7MKF	23871	2024-12-29	2021-04-23	3.0	3.23	—	4.1	0.022	1.99	0.0	0.09	11.33	0.01	2.198	1.23	0.00	7.7	92.3	0.0	-1.78	0.48	0.63	2.98	3.5	0.004	0.80	0.0	0.05	14.89	0.00	2.257	15.14	2.03	7.3	92.7	0.0	-2.98	2.97	0.47	0.64	2.54	11370	730	10	0	0	0	5800	logfile
✔	7MKG	23890	2024-12-29	2021-04-23	3.07	3.13	—	4.0	0.023	1.98	0.0	0.10	10.38	0.01	2.409	0.44	0.00	5.6	94.4	0.0	-1.46	0.47	0.65	2.63	4.1	0.004	0.67	0.0	0.05	13.79	0.00	2.407	13.91	2.19	6.6	93.4	0.0	-2.53	2.01	0.47	0.71	2.61	11370	730	10	0	0	0	5800	logfile
✔	7MK2	23884	2024-12-27	2021-04-21	3.8	3.60	3.84	3.6	0.004	0.69	0.0	0.04	14.23	0.00	2.228	8.87	0.00	7.7	92.3	0.0	-1.60	0.63	0.77	0.81	3.6	0.003	0.67	0.0	0.04	16.25	0.00	2.511	7.19	2.79	5.4	94.6	0.0	-0.95	1.43	0.63	0.77	0.77	5333	708	4	0	2	0	0	logfile
✔	7oB4	12794	2024-12-29	2021-04-21	3.22	3.25	—	3.5	0.009	1.03	0.0	0.07	13.89	0.00	2.206	23.16	0.09	3.7	96.3	0.0	-4.30	0.54	0.78	4.06	3.5	0.006	0.78	0.0	0.05	15.10	0.00	2.393	15.36	2.38	7.3	92.7	0.0	-4.14	1.20	0.44	0.75	4.57	10066	1288	14	0	0	0	0	logfile
✔	7MJQ	23882	2024-12-31	2021-04-20	4.2	4.29	—	4.2	0.009	1.55	0.0	0.15	11.99	0.01	1.552	6.01	0.00	9.4	90.6	0.0	-1.25	0.52	0.66	—	4.2	0.005	0.89	0.0	0.05	10.81	0.00	2.367	1.47	0.00	15.4	84.5	0.1	-2.10	1.84	0.60	0.76	—	14976	2982	13	0	10	0	0	logfile

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