Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7o4H	12718	2024-12-31	2021-04-06	3.4	4.30	—	4.1	0.005	0.85	0.0	0.05	13.96	0.01	2.106	15.70	0.00	14.3	85.7	0.0	-2.48	0.73	0.77	1.27	4.0	0.003	0.75	0.0	0.04	15.85	0.00	2.459	8.26	1.87	9.7	90.3	0.0	-1.20	0.49	0.72	0.76	1.37	14195	1780	4	0	0	0	0	logfile
✔	7EKi	31168	2024-12-31	2021-04-05	3.18	3.70	—	3.6	0.005	0.63	0.0	0.06	12.21	0.00	2.033	5.79	0.88	5.3	94.7	0.0	-1.88	0.69	0.81	2.83	3.6	0.003	0.56	0.0	0.04	13.27	0.00	2.557	2.77	0.53	5.8	94.2	0.0	-0.26	0.42	0.68	0.82	2.67	16005	1975	15	0	20	0	0	logfile
✔	7EKM	31170	2024-12-28	2021-04-05	3.6	3.84	—	3.9	0.005	1.19	0.0	0.05	13.13	0.01	2.215	6.00	4.77	6.4	92.9	0.7	-4.90	0.65	0.75	2.32	3.8	0.003	0.71	0.0	0.04	15.10	0.00	2.533	5.29	1.87	5.1	94.9	0.0	-2.19	1.19	0.68	0.84	1.34	9124	1162	2	0	0	0	0	logfile
✔	7EKL	31169	2024-12-28	2021-04-05	3.5	3.66	—	3.6	0.005	1.13	0.0	0.05	11.15	0.01	2.141	5.25	0.81	2.9	96.9	0.2	-5.70	0.72	0.83	3.54	3.6	0.002	0.62	0.0	0.04	14.63	0.00	2.046	6.25	2.72	3.1	96.9	0.0	-0.26	1.51	0.73	0.85	2.32	9394	1180	4	0	4	0	0	logfile
✔	7EK2	31166	2024-12-30	2021-04-03	2.7	2.78	2.66	2.7	0.017	1.77	0.0	0.08	13.89	0.01	2.244	3.05	0.99	0.9	99.1	0.0	0.00	0.58	0.80	3.67	2.8	0.007	0.70	0.0	0.05	16.34	0.01	2.491	2.79	2.11	1.7	98.3	0.0	1.46	0.38	0.71	0.87	3.09	13540	1705	5	0	0	0	0	logfile
✔	7MD2	23763	2024-12-31	2021-04-03	3.1	2.24	3.15	2.2	0.009	0.80	0.0	0.05	14.28	0.00	1.726	3.12	0.25	1.8	98.0	0.2	-1.87	0.73	0.76	3.86	2.9	0.004	0.72	0.0	0.04	16.08	0.00	1.070	5.03	1.45	2.2	97.6	0.2	0.40	1.23	0.73	0.78	3.45	47119	3115	13	0	8	0	23645	logfile
✔	7MD4	23766	2024-12-30	2021-04-03	4.5	5.44	4.85	4.5	0.020	1.36	0.0	0.06	10.20	0.01	1.866	19.53	0.06	9.4	90.1	0.5	-3.06	0.84	0.68	—	4.4	0.003	0.69	0.0	0.04	11.44	0.00	2.540	14.54	0.06	7.5	92.5	0.1	-1.62	1.44	0.85	0.74	—	13913	1720	12	0	0	0	0	logfile
✔	7EK3	31167	2024-12-30	2021-04-03	2.7	2.73	2.64	2.7	0.018	1.85	5.0	0.08	14.91	0.01	2.231	2.51	1.66	0.6	99.4	0.0	-0.56	0.65	0.85	3.26	2.7	0.003	0.58	0.0	0.04	16.82	0.00	2.509	3.93	1.99	1.5	98.5	0.0	2.70	0.42	0.72	0.88	1.85	13505	1705	5	0	0	0	0	logfile
✔	7o3V	12709	2024-12-31	2021-04-03	3.7	3.99	3.67	4.0	0.004	0.71	0.0	0.04	14.44	0.00	2.022	11.19	0.00	3.0	97.0	0.0	2.19	0.54	0.75	1.15	4.0	0.003	0.70	0.0	0.04	17.38	0.00	2.394	10.54	3.89	2.2	97.8	0.0	2.85	0.49	0.54	0.75	1.24	15742	2153	10	0	0	0	0	logfile
✔	7EJU	31163	2024-12-30	2021-04-02	3.5	3.64	—	3.6	0.009	1.29	0.0	0.07	11.94	0.01	2.257	4.79	1.15	17.0	82.8	0.2	-5.48	0.72	0.79	3.13	3.6	0.006	0.84	0.0	0.05	15.19	0.00	1.970	8.70	3.32	14.9	85.0	0.1	-2.95	0.83	0.71	0.80	2.34	13713	1700	4	0	3	0	0	logfile
✔	7EJE	31160	2024-12-28	2021-04-02	3.98	4.18	—	4.0	0.009	1.30	0.0	0.05	15.52	0.00	1.454	41.99	4.44	4.9	92.8	2.3	-2.37	0.58	0.73	1.42	4.0	0.004	0.77	0.0	0.04	18.50	0.00	1.876	13.91	3.76	4.5	94.6	1.0	0.35	4.28	0.63	0.84	0.94	7602	933	8	18	6	0	0	logfile
✔	7EJC	31158	2024-12-28	2021-04-02	2.97	3.25	—	3.0	0.011	1.18	0.0	0.05	16.42	0.00	1.616	11.47	4.17	5.2	94.4	0.3	-3.39	0.63	0.84	3.61	3.0	0.003	0.65	0.0	0.04	16.70	0.00	1.990	6.88	1.61	5.2	94.8	0.0	0.04	1.40	0.68	0.92	2.72	7485	930	7	9	9	0	0	logfile
✔	7EJK	31162	2024-12-28	2021-04-02	3.4	3.65	—	3.5	0.006	0.77	0.0	0.05	13.04	0.00	1.495	12.36	0.43	5.2	94.8	0.0	-0.01	0.70	0.83	2.22	3.5	0.005	0.85	0.0	0.05	15.97	0.00	2.339	9.43	2.67	5.8	94.1	0.1	0.11	1.01	0.71	0.85	1.57	8586	1093	6	0	1	0	0	logfile
✔	7EJA	31157	2024-12-28	2021-04-01	3.6	4.27	—	4.1	0.005	0.85	2.0	0.06	13.82	0.00	1.893	17.71	0.11	6.0	94.0	0.0	-0.43	0.70	0.80	1.56	4.1	0.003	0.88	0.0	0.04	15.79	0.00	2.421	13.08	2.47	4.8	95.2	0.0	-0.38	1.08	0.70	0.81	1.17	8584	1097	6	0	1	0	0	logfile
✔	7EJ0	31147	2024-12-28	2021-04-01	3.2	3.48	—	4.0	0.009	1.12	7.0	0.08	13.82	0.01	1.736	21.36	0.43	6.5	93.5	0.0	-0.98	0.57	0.80	2.10	4.0	0.003	0.73	0.0	0.04	16.57	0.00	2.507	10.88	2.99	6.0	94.0	0.0	-0.70	0.59	0.57	0.82	2.04	8600	1099	6	0	1	0	0	logfile
✔	7MC0	23752	2024-12-27	2021-04-01	3.3	3.73	—	3.7	0.012	1.62	8.0	0.10	12.73	0.01	1.925	7.84	1.19	3.9	95.8	0.3	-0.86	0.65	0.81	2.48	3.7	0.003	0.64	0.0	0.04	14.68	0.00	2.516	5.22	1.45	3.8	96.2	0.0	0.85	1.80	0.64	0.82	2.09	7092	931	4	0	0	0	0	logfile
✔	7o3D	12704	2024-12-29	2021-04-01	3.71	4.15	3.79	4.0	0.003	0.77	0.0	0.05	13.17	0.01	2.146	6.21	0.00	4.2	95.8	0.0	-0.61	0.76	0.72	1.16	3.9	0.003	0.53	0.0	0.04	15.44	0.00	2.337	5.86	0.94	4.6	95.4	0.0	0.29	0.45	0.76	0.73	1.09	11458	709	1	0	0	0	5694	logfile
✔	7EJ6	31153	2024-12-28	2021-04-01	3.21	3.47	—	3.3	0.008	1.03	1.0	0.05	16.92	0.00	2.019	51.68	1.13	12.1	87.2	0.7	-4.78	0.59	0.89	2.78	3.2	0.003	0.69	0.0	0.04	17.49	0.00	2.160	9.07	2.76	6.2	93.3	0.5	-0.88	1.36	0.58	0.89	2.48	7584	948	7	9	6	0	0	logfile
✔	7MBX	23749	2024-12-28	2021-04-01	1.95	2.56	1.94	2.4	0.005	0.88	1.0	0.06	12.16	0.01	2.287	2.16	0.45	1.5	98.5	0.0	-0.11	0.72	0.86	4.55	2.3	0.003	0.61	0.0	0.04	15.12	0.00	2.476	4.87	1.12	0.9	99.1	0.0	1.91	0.50	0.71	0.88	4.65	8433	1065	13	0	2	61	0	logfile
✔	7EJ7	31154	2024-12-28	2021-04-01	3.41	3.67	—	3.5	0.006	0.91	0.0	0.04	18.10	0.00	1.860	43.57	1.75	10.8	88.2	1.0	-4.75	0.57	0.87	3.13	3.5	0.005	0.69	0.0	0.05	18.67	0.00	1.985	9.35	2.51	9.8	89.7	0.5	-0.87	1.16	0.54	0.87	2.70	7773	948	8	18	6	0	0	logfile

• ← previous
• Page 303 of 411
• next →