Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7EiB	31145	2024-12-28	2021-03-30	3.0	2.24	—	2.0	0.005	0.86	0.0	0.05	12.65	0.01	2.306	3.38	0.27	2.0	98.0	0.0	-0.34	0.74	0.75	3.17	2.0	0.004	0.68	0.0	0.04	16.00	0.01	2.475	8.09	1.88	2.2	97.8	0.0	0.99	1.20	0.75	0.78	2.06	7204	928	5	0	0	0	0	logfile
✔	7o24	12698	2024-12-29	2021-03-30	4.8	4.54	4.80	4.4	0.003	0.62	0.0	0.04	17.35	0.00	2.084	14.17	1.38	3.2	96.6	0.2	0.00	0.76	0.80	—	4.4	0.003	0.61	0.0	0.04	16.86	0.00	2.395	9.71	0.11	3.7	96.1	0.2	0.05	0.98	0.76	0.80	—	9318	1090	5	46	0	0	0	logfile
✔	7M8J	23717	2024-12-27	2021-03-29	3.48	3.83	3.41	3.7	0.006	0.96	0.0	0.05	14.72	0.00	1.837	12.31	0.00	6.8	93.2	0.0	-0.32	0.69	0.80	2.61	3.7	0.003	0.64	0.0	0.04	15.09	0.00	2.333	4.92	1.29	5.9	94.1	0.0	-0.55	0.44	0.69	0.81	2.81	6915	453	3	0	0	0	3398	logfile
✔	7o10	12685	2024-12-30	2021-03-28	3.6	4.08	—	3.8	0.006	1.09	2.0	0.06	14.56	0.01	1.946	4.80	1.06	7.0	93.0	0.0	-5.64	0.78	0.82	1.71	3.8	0.003	0.68	0.0	0.04	15.82	0.00	2.017	9.65	1.96	5.2	94.8	0.0	-0.31	1.16	0.78	0.82	1.16	11651	1514	6	0	1	1	0	logfile
✔	7o12	12687	2024-12-30	2021-03-28	3.7	4.45	—	3.9	0.012	1.29	0.0	0.07	15.58	0.01	1.734	8.32	0.82	5.6	94.4	0.0	-5.32	0.82	0.84	1.75	3.9	0.003	0.65	0.0	0.04	15.53	0.00	1.935	11.58	2.46	5.6	94.4	0.0	-0.13	1.53	0.82	0.85	1.04	11691	1511	8	0	5	1	0	logfile
✔	7M7E	23710	2024-12-31	2021-03-28	3.2	3.78	—	3.7	0.006	1.09	12.0	0.06	16.73	0.01	2.151	8.15	9.50	3.9	96.1	0.0	-1.47	0.69	0.72	1.63	3.7	0.003	0.57	0.0	0.04	15.03	0.00	2.540	4.82	1.91	3.5	96.5	0.0	0.10	0.69	0.74	0.80	2.03	16677	2230	4	0	0	0	0	logfile
✔	7o13	12688	2024-12-30	2021-03-28	3.6	4.33	—	3.9	0.007	1.12	1.0	0.07	14.31	0.01	1.938	3.91	0.82	6.2	93.8	0.0	-5.71	0.80	0.82	1.82	3.9	0.004	0.69	0.0	0.04	15.31	0.00	1.943	8.54	1.88	5.6	94.4	0.0	-0.29	1.43	0.81	0.85	1.33	11651	1514	6	0	1	1	0	logfile
✔	7o17	12692	2024-12-30	2021-03-28	4.5	4.66	—	4.2	0.007	1.22	0.0	0.07	16.81	0.01	2.089	10.97	1.09	9.8	90.2	0.0	-5.33	0.78	0.83	—	4.2	0.003	0.75	0.0	0.04	14.54	0.00	1.892	17.08	0.00	7.2	92.8	0.0	-2.08	0.57	0.78	0.83	—	11679	1531	7	0	4	0	0	logfile
✔	7o0Z	12684	2024-12-28	2021-03-28	3.7	4.56	—	4.1	0.007	1.08	0.0	0.06	15.07	0.01	2.319	5.56	0.44	6.4	93.6	0.0	-5.96	0.74	0.79	1.62	4.1	0.004	0.78	0.0	0.04	15.93	0.00	2.500	11.63	3.43	6.1	93.9	0.0	-0.05	1.18	0.74	0.81	1.14	8730	1142	4	0	0	0	0	logfile
✔	7o0Y	12683	2024-12-29	2021-03-28	3.3	3.83	—	3.5	0.006	1.04	1.0	0.06	14.35	0.01	1.857	4.59	0.41	6.1	93.9	0.0	-5.81	0.76	0.84	2.66	3.5	0.003	0.63	0.0	0.04	15.45	0.00	1.972	7.86	0.90	5.1	94.9	0.0	-0.51	1.52	0.77	0.85	1.70	11651	1514	6	0	1	1	0	logfile
✔	7o11	12686	2024-12-30	2021-03-28	3.7	4.17	—	3.8	0.006	1.11	1.0	0.06	14.72	0.01	1.960	5.69	0.74	6.1	93.9	0.0	-5.78	0.79	0.82	1.84	3.8	0.004	0.72	0.0	0.04	15.87	0.00	1.967	9.52	2.29	6.3	93.7	0.0	-0.60	0.55	0.80	0.83	1.48	11651	1514	6	0	1	1	0	logfile
✔	7M7B	23709	2024-12-27	2021-03-27	2.95	3.73	2.93	3.1	0.012	1.87	5.0	0.11	13.02	0.02	2.512	0.10	0.00	3.5	96.5	0.0	-0.73	0.62	0.86	4.80	3.1	0.004	0.67	0.0	0.05	14.06	0.00	2.559	4.67	0.37	2.9	97.1	0.0	0.27	1.32	0.64	0.89	3.85	4898	635	4	0	2	0	0	logfile
✔	7M6Q	23704	2024-12-31	2021-03-26	2.91	3.75	2.97	3.5	0.009	1.16	5.0	0.07	15.90	0.01	2.041	5.71	0.00	3.1	96.9	0.0	-0.39	0.82	0.82	2.70	3.5	0.004	0.69	0.0	0.04	17.20	0.00	2.478	7.24	2.01	3.3	96.7	0.0	0.64	0.54	0.81	0.83	3.35	14725	1800	14	0	10	0	0	logfile
✔	7M6R	23705	2024-12-31	2021-03-26	3.57	3.53	3.53	3.8	0.008	1.20	0.0	0.08	12.25	0.01	2.333	4.44	0.64	3.5	96.5	0.0	-0.05	0.81	0.80	2.23	3.8	0.003	0.85	0.0	0.05	15.32	0.00	2.413	9.16	2.55	4.7	95.3	0.0	0.22	1.40	0.81	0.81	1.97	14300	1755	14	0	5	0	0	logfile
✔	7M71	23707	2024-12-27	2021-03-26	2.66	3.67	2.73	3.0	0.013	1.86	5.0	0.11	12.98	0.02	2.531	0.08	0.41	5.0	95.0	0.0	-0.93	0.52	0.79	3.87	3.0	0.003	0.63	0.0	0.04	13.61	0.00	2.484	5.05	0.54	3.2	96.8	0.0	-0.33	1.33	0.59	0.90	3.85	6646	852	6	0	4	0	0	logfile
✔	7M6M	23700	2024-12-31	2021-03-26	3.09	2.99	3.00	3.2	0.008	1.31	0.0	0.08	11.55	0.01	2.383	3.69	0.00	3.7	96.3	0.0	0.33	0.80	0.82	2.77	3.3	0.004	0.76	0.0	0.05	15.43	0.00	2.501	9.45	2.33	2.8	97.2	0.0	0.59	0.72	0.82	0.84	2.39	14190	1720	15	0	15	0	0	logfile
✔	7M74	23708	2024-12-30	2021-03-26	3.93	4.17	—	3.1	0.004	0.74	0.0	0.05	9.73	0.01	2.337	3.92	0.00	3.0	97.0	0.0	-3.25	0.91	0.78	1.54	3.0	0.004	0.69	0.0	0.04	12.83	0.00	2.480	11.49	1.43	3.6	96.4	0.0	-0.11	1.32	0.92	0.83	1.82	13457	1699	10	0	6	0	0	logfile
✔	7M6N	23701	2024-12-31	2021-03-26	2.61	3.47	2.67	3.2	0.009	1.28	0.0	0.08	11.87	0.01	2.228	4.91	0.31	1.7	98.3	0.0	0.23	0.86	0.85	3.28	3.2	0.003	0.66	0.0	0.04	14.53	0.00	2.512	7.73	1.50	1.0	99.0	0.0	0.88	0.63	0.83	0.84	3.00	14700	1810	15	0	5	0	0	logfile
✔	7M6o	23702	2024-12-31	2021-03-26	2.84	3.65	2.87	3.4	0.009	1.38	0.0	0.09	12.01	0.01	2.041	5.25	0.00	2.8	97.2	0.0	-0.30	0.83	0.83	3.89	3.4	0.003	0.68	0.0	0.04	15.00	0.00	2.585	7.60	1.94	2.4	97.6	0.0	0.47	1.01	0.81	0.85	3.97	14670	1790	14	0	10	0	0	logfile
✔	7M6P	23703	2024-12-31	2021-03-26	3.28	3.97	3.27	3.8	0.008	1.27	5.0	0.08	12.69	0.01	2.293	5.19	0.00	3.1	96.9	0.0	0.26	0.78	0.79	1.77	3.8	0.003	0.81	0.0	0.05	14.78	0.00	2.431	9.49	2.24	4.0	96.0	0.0	0.41	2.32	0.77	0.82	1.25	14650	1800	14	0	5	0	0	logfile

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