Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VUL	43532	2024-12-28	2024-01-29	3.83	4.04	6.77	4.0	0.004	0.68	0.0	0.04	16.80	0.01	2.218	7.73	0.27	8.8	90.9	0.3	-1.67	0.75	0.82	1.77	4.0	0.003	0.67	0.0	0.04	17.25	0.00	2.429	5.94	4.50	9.3	90.4	0.3	-1.52	0.30	0.74	0.82	1.89	7158	963	4	0	0	0	0	logfile
✔	8Y3N	38892	2024-12-27	2024-01-29	3.8	4.11	3.77	4.1	0.007	0.82	0.0	0.05	13.36	0.01	2.382	11.92	0.00	11.9	88.1	0.0	-3.00	0.45	0.80	3.56	4.1	0.003	0.68	0.0	0.04	15.87	0.01	2.411	7.58	1.48	4.6	95.4	0.0	-1.32	1.04	0.42	0.78	2.81	3694	494	4	0	0	0	0	logfile
✔	8Y3M	38889	2024-12-31	2024-01-29	3.25	2.64	—	3.2	0.007	1.17	0.0	0.06	11.37	0.01	2.299	4.87	0.11	11.1	88.3	0.6	-5.56	0.67	0.56	1.24	3.3	0.004	0.74	0.0	0.04	15.11	0.00	2.352	8.63	1.40	9.7	90.0	0.4	-1.51	1.94	0.77	0.75	1.87	16793	2017	3	0	0	0	0	logfile
✔	8VUW	43542	2024-12-30	2024-01-29	3.19	2.92	3.07	3.0	0.007	0.98	0.0	0.06	17.62	0.00	2.280	7.02	0.36	4.5	95.5	0.0	-1.89	0.66	0.80	4.06	3.0	0.003	0.57	0.0	0.04	16.53	0.00	2.591	7.13	1.15	4.1	95.9	0.0	-0.57	0.35	0.65	0.82	3.18	13055	1560	10	0	5	0	0	logfile
✔	8Y3U	38899	2024-12-29	2024-01-29	2.98	3.75	2.99	3.4	0.004	0.73	0.0	0.05	18.33	0.01	2.130	6.39	4.19	5.5	94.1	0.4	-1.73	0.76	0.72	2.35	3.4	0.005	0.83	0.0	0.05	17.29	0.01	2.359	9.77	4.86	8.2	91.7	0.1	-1.55	3.41	0.78	0.77	2.31	11273	1447	15	0	15	0	0	logfile
✔	8VUQ	43536	2024-12-28	2024-01-29	3.85	4.17	3.94	4.1	0.003	0.62	0.0	0.04	17.33	0.01	2.133	8.08	0.66	12.1	87.5	0.4	-1.68	0.71	0.83	1.47	4.1	0.003	0.66	0.0	0.04	17.52	0.00	2.507	7.55	6.50	11.9	87.6	0.5	-1.72	0.91	0.71	0.82	1.11	8657	1161	4	0	0	0	0	logfile
✔	8Y32	38866	2024-12-27	2024-01-28	4.13	3.53	3.37	3.5	0.004	0.70	0.0	0.05	21.05	0.01	2.120	9.81	0.72	6.5	93.3	0.3	-1.08	0.63	0.72	—	3.5	0.003	0.62	0.0	0.04	14.61	0.00	2.411	5.69	0.14	5.3	94.4	0.3	-0.63	1.63	0.62	0.70	—	6571	791	4	0	8	0	0	logfile
✔	8VTi	43523	2024-12-27	2024-01-26	3.9	4.17	3.94	4.0	0.012	1.49	1.0	0.09	14.58	0.01	2.503	5.97	3.54	9.4	90.5	0.2	-3.01	0.62	0.68	1.27	4.1	0.003	0.69	0.0	0.04	15.93	0.00	2.483	10.42	5.12	5.1	94.9	0.0	-1.05	2.88	0.69	0.77	1.82	4667	596	6	0	4	0	0	logfile
✔	8Y2i	38856	2024-12-28	2024-01-26	2.92	3.09	2.91	3.1	0.006	0.79	1.0	0.05	21.15	0.01	2.219	11.22	0.71	12.5	87.5	0.0	-2.35	0.64	0.69	1.65	3.1	0.003	0.62	0.0	0.03	21.78	0.00	2.552	8.84	1.95	9.3	90.7	0.0	-0.76	1.23	0.65	0.70	1.38	8676	723	4	143	0	0	0	logfile
✔	8Y2N	38858	2024-12-28	2024-01-26	3.19	3.51	3.24	3.5	0.011	1.21	2.0	0.10	15.98	0.01	1.998	17.33	2.96	6.8	91.7	1.6	-0.68	0.56	0.74	3.61	3.5	0.003	0.61	0.0	0.04	16.98	0.00	2.333	7.56	4.07	5.2	94.6	0.2	0.71	1.25	0.59	0.78	2.47	7714	896	8	0	8	0	0	logfile
✔	8VT7	43519	2024-12-30	2024-01-25	2.66	3.25	2.72	3.1	0.006	0.87	0.0	0.05	18.19	0.00	1.877	4.88	1.58	3.2	96.8	0.0	0.60	0.65	0.82	3.60	3.1	0.004	0.59	0.0	0.04	18.17	0.00	2.021	5.55	2.13	2.8	97.2	0.0	0.82	1.20	0.64	0.81	3.59	13590	1722	8	2	4	0	0	logfile
✔	8VSZ	43512	2024-12-30	2024-01-25	3.07	3.28	3.17	3.3	0.003	0.65	0.0	0.05	19.65	0.00	2.032	10.74	0.00	2.9	96.8	0.3	-0.47	0.64	0.75	1.97	3.3	0.004	0.73	0.0	0.05	18.08	0.00	2.308	9.71	4.62	3.8	95.8	0.3	-0.09	1.27	0.66	0.81	2.43	13220	1580	15	0	25	0	0	logfile
✔	8Y2D	38851	2024-12-27	2024-01-25	2.8	2.99	2.87	3.0	0.003	0.51	0.0	0.04	16.29	0.00	2.240	3.59	0.00	4.2	95.8	0.0	1.06	0.63	0.86	1.81	3.0	0.003	0.52	0.0	0.04	16.94	0.00	2.223	1.79	2.48	4.0	96.0	0.0	1.04	0.23	0.60	0.86	2.03	4189	528	2	0	4	4	0	logfile
✔	8Y2C	38850	2024-12-27	2024-01-25	3.16	3.42	3.25	3.5	0.003	0.51	0.0	0.04	19.03	0.00	2.160	5.35	0.00	4.2	95.8	0.0	0.76	0.55	0.83	1.39	3.5	0.002	0.48	0.0	0.04	17.73	0.00	2.626	3.45	4.28	3.6	96.4	0.0	1.17	0.17	0.55	0.83	0.89	4207	529	2	0	2	0	0	logfile
✔	8RT8	19482	2024-12-29	2024-01-25	3.05	4.11	3.09	3.4	0.006	0.81	0.0	0.05	13.74	0.01	1.973	17.21	0.07	3.8	96.2	0.0	-0.89	0.79	0.86	2.24	3.4	0.006	0.72	0.0	0.04	15.07	0.00	2.393	10.93	1.81	2.2	97.8	0.0	0.36	0.78	0.79	0.89	2.32	55802	7184	46	0	0	0	0	logfile
✔	8VT3	43517	2024-12-29	2024-01-25	3.33	3.63	3.39	3.6	0.011	0.87	0.0	0.06	18.19	0.01	2.153	4.40	0.00	8.1	91.9	0.0	-3.58	0.79	0.87	3.85	3.6	0.003	0.59	0.0	0.04	14.61	0.00	2.505	2.97	1.03	4.4	95.6	0.0	-1.61	0.96	0.77	0.87	2.99	10758	1377	15	0	18	0	0	logfile
✔	8VT2	43516	2024-12-29	2024-01-25	3.14	3.48	3.27	3.5	0.014	0.96	0.0	0.06	15.92	0.01	2.144	7.00	0.00	7.7	92.3	0.0	-1.30	0.72	0.84	3.85	3.5	0.004	0.60	0.0	0.05	14.23	0.00	2.520	3.97	1.03	5.5	94.5	0.0	0.03	0.28	0.65	0.81	3.29	10674	1362	12	0	18	0	0	logfile
✔	8RTB	19485	2024-12-30	2024-01-25	3.83	4.65	3.83	4.1	0.006	0.79	0.0	0.05	14.19	0.01	2.126	12.18	0.00	6.7	93.3	0.0	-1.38	0.63	0.65	1.25	4.1	0.006	0.88	0.0	0.05	16.06	0.01	2.396	18.43	2.33	5.1	94.9	0.0	-0.38	1.75	0.70	0.85	1.12	14132	1804	9	0	0	0	0	logfile
✔	8VSP	43501	2024-12-29	2024-01-24	3.12	2.30	3.11	2.0	0.004	0.53	0.0	0.04	9.48	0.00	2.029	8.71	0.51	3.3	96.7	0.0	0.72	0.78	0.79	3.96	2.0	0.003	0.56	0.0	0.04	14.00	0.00	2.580	5.40	2.38	3.2	96.8	0.0	2.19	0.55	0.77	0.79	3.05	11388	1476	12	0	3	0	0	logfile
✔	8VSU	43506	2024-12-31	2024-01-24	2.86	3.11	2.98	3.2	0.013	1.76	0.0	0.09	12.49	0.01	2.529	0.13	0.12	1.8	98.2	0.0	-1.20	0.70	0.85	4.70	3.2	0.004	0.92	0.0	0.04	15.92	0.00	2.322	1.71	0.84	2.1	97.9	0.0	1.62	1.83	0.64	0.86	3.53	15240	941	4	0	1	0	7646	logfile

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