Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6W5S	21546	2024-12-31	2020-03-13	3.0	3.15	—	3.1	0.005	0.83	1.0	0.13	18.49	0.01	1.946	31.03	2.70	7.6	92.0	0.4	-3.24	0.67	0.81	2.46	3.1	0.003	0.75	0.0	0.04	15.89	0.00	2.393	5.88	1.93	6.3	93.4	0.3	0.31	0.50	0.67	0.85	2.22	9700	1194	6	0	21	0	0	logfile
✔	6M67	30115	2024-12-31	2020-03-13	3.6	3.14	—	4.0	0.006	1.14	0.0	0.06	14.95	0.01	2.028	6.79	0.00	10.3	89.7	0.0	-4.86	0.54	0.64	1.39	3.5	0.003	0.83	0.0	0.04	17.31	0.01	2.452	12.91	4.80	9.0	91.0	0.0	-1.45	0.75	0.54	0.64	1.13	14938	1855	7	0	0	0	0	logfile
✔	6W5R	21545	2024-12-31	2020-03-13	3.6	3.75	—	3.7	0.015	2.10	7.0	0.18	17.45	0.01	2.053	4.99	3.86	6.7	92.6	0.7	-3.31	0.61	0.75	2.23	3.7	0.003	0.76	0.0	0.04	15.53	0.00	2.548	6.99	3.67	6.5	93.3	0.3	-0.01	0.53	0.63	0.77	1.69	9629	1194	6	0	20	0	0	logfile
✔	6W5T	21547	2024-12-31	2020-03-13	3.7	3.75	—	3.7	0.007	1.14	2.0	0.18	19.77	0.01	2.054	48.42	5.60	8.0	91.5	0.5	-2.80	0.61	0.76	1.74	3.7	0.004	0.84	0.0	0.05	16.24	0.00	2.394	10.86	3.44	6.3	93.6	0.1	-0.05	1.32	0.62	0.78	1.64	9505	1175	6	0	21	0	0	logfile
✔	6W5C	21541	2024-12-29	2020-03-13	2.9	2.92	—	3.2	0.004	0.64	0.0	0.04	18.52	0.00	2.103	8.53	0.85	7.4	92.4	0.2	-1.44	0.84	0.82	4.35	3.2	0.006	0.64	0.0	0.04	20.04	0.00	2.490	9.57	1.94	7.9	92.1	0.0	-0.33	2.18	0.84	0.83	3.53	10183	1023	5	105	0	0	0	logfile
✔	6YAE	10747	2024-12-30	2020-03-12	3.9	4.10	4.00	4.1	0.009	0.82	0.0	0.05	14.19	0.00	2.093	17.68	0.13	9.3	90.5	0.2	-3.34	0.77	0.85	1.78	4.1	0.003	0.73	0.0	0.04	16.44	0.00	2.410	9.74	1.90	4.3	95.7	0.1	0.46	1.26	0.75	0.83	1.03	13707	1717	4	0	0	0	0	logfile
✔	6M5U	30093	2024-12-29	2020-03-11	3.8	3.78	—	3.8	0.007	0.86	1.0	0.05	16.07	0.00	2.210	18.52	5.59	9.0	90.8	0.2	-3.03	0.62	0.81	1.90	3.8	0.003	0.68	0.0	0.04	16.93	0.00	2.092	8.64	4.03	8.4	91.6	0.0	-0.05	2.21	0.65	0.82	1.38	10549	1359	5	0	5	0	0	logfile
✔	6M5S	30091	2024-12-29	2020-03-11	3.9	3.99	—	3.9	0.005	0.77	2.0	0.05	15.65	0.00	2.015	11.35	5.29	9.2	90.6	0.1	-3.65	0.59	0.68	1.57	3.9	0.004	0.97	1.0	0.05	16.57	0.00	2.100	13.09	3.00	9.0	91.0	0.0	-0.95	0.99	0.62	0.76	1.65	11055	1440	4	0	2	0	0	logfile
✔	6W4S	21539	2024-12-27	2020-03-11	3.2	3.63	—	3.6	0.004	0.57	0.0	0.04	14.38	0.00	2.176	8.10	4.45	5.6	94.4	0.0	-1.13	0.61	0.85	2.37	3.6	0.003	0.60	0.0	0.04	15.46	0.00	2.427	8.30	4.64	3.1	96.9	0.0	1.76	0.45	0.57	0.84	2.15	4986	650	3	0	0	0	0	logfile
✔	6M5V	30094	2024-12-29	2020-03-11	4.5	4.75	—	4.6	0.007	0.86	1.0	0.05	16.07	0.00	2.209	18.28	5.50	9.0	90.9	0.2	-3.04	0.56	0.57	—	4.6	0.003	0.81	0.0	0.04	13.87	0.00	1.982	17.51	0.00	8.4	91.5	0.1	-0.67	2.42	0.63	0.74	—	10549	1359	5	0	5	0	0	logfile
✔	6W2X	21533	2024-12-29	2020-03-08	3.6	3.76	—	3.7	0.005	0.75	0.0	0.05	13.84	0.00	2.034	5.55	0.00	7.1	92.9	0.0	-3.47	0.71	0.76	2.41	3.7	0.003	0.60	0.0	0.04	14.85	0.00	2.421	2.85	1.96	3.9	96.1	0.0	-0.11	1.32	0.72	0.80	2.45	9860	1345	6	0	10	0	0	logfile
✔	6W2Y	21534	2024-12-29	2020-03-08	3.2	3.42	—	3.4	0.007	0.73	0.0	0.06	14.89	0.00	2.193	10.12	0.12	8.3	91.7	0.0	-3.95	0.67	0.78	2.98	3.5	0.004	0.68	0.0	0.04	14.86	0.00	2.478	6.78	2.28	3.2	96.8	0.0	-0.11	0.53	0.66	0.81	2.43	9721	1327	6	0	14	0	0	logfile
✔	6M4o	30080	2024-12-28	2020-03-08	3.4	3.64	—	3.6	0.007	1.14	0.0	0.06	11.53	0.01	2.203	4.58	1.15	11.4	88.4	0.2	-5.81	0.66	0.81	3.38	3.6	0.003	0.74	0.0	0.04	15.45	0.00	2.508	7.71	3.14	9.4	90.6	0.0	-1.76	1.35	0.67	0.82	2.39	8918	1127	6	0	1	0	0	logfile
✔	6M4H	30078	2024-12-28	2020-03-07	3.9	4.39	—	3.9	0.008	0.89	0.0	0.05	29.22	0.01	1.729	27.61	2.85	3.1	96.7	0.2	-6.02	0.82	0.76	1.36	4.0	0.006	0.81	0.0	0.04	29.78	0.00	2.051	16.58	2.31	3.1	96.9	0.0	0.78	1.74	0.87	0.84	0.92	9420	656	10	206	0	0	0	logfile
✔	6Y90	10731	2024-12-29	2020-03-06	3.69	4.05	—	4.0	0.007	0.90	0.0	0.07	14.80	0.00	2.031	7.74	0.19	2.8	97.2	0.0	0.18	0.59	0.76	1.32	4.0	0.003	0.70	0.0	0.05	15.26	0.00	2.384	10.02	2.60	4.1	95.9	0.0	-0.12	0.97	0.59	0.80	1.97	9778	1218	8	0	20	0	0	logfile
✔	6Y92	10732	2024-12-31	2020-03-06	4.73	5.03	—	4.9	0.006	0.77	0.0	0.06	14.34	0.00	2.028	7.43	0.77	3.7	96.3	0.0	-0.68	0.59	0.71	—	4.9	0.004	0.78	0.0	0.04	13.47	0.00	2.430	11.90	0.10	8.0	92.0	0.0	-1.50	0.71	0.62	0.79	—	9497	1210	8	0	6	0	0	logfile
✔	6M4G	30077	2024-12-28	2020-03-06	2.8	3.16	—	3.1	0.006	0.93	0.0	0.06	25.70	0.01	2.169	14.42	2.14	2.8	97.2	0.0	-6.14	0.60	0.74	3.05	3.1	0.004	0.65	0.0	0.04	28.01	0.00	2.544	8.30	1.96	1.4	98.6	0.0	1.29	1.28	0.61	0.80	2.32	9010	656	10	186	0	0	0	logfile
✔	6M4D	30076	2024-12-29	2020-03-06	4.4	4.58	—	4.3	0.007	0.84	0.0	0.05	31.37	0.01	2.074	25.84	0.71	6.6	92.8	0.6	-2.81	0.88	0.82	—	4.3	0.004	0.70	0.0	0.04	30.41	0.01	2.121	17.44	0.00	2.6	96.8	0.6	0.53	1.43	0.88	0.82	—	10497	682	10	250	0	0	0	logfile
✔	6M49	30074	2024-12-27	2020-03-06	3.7	4.45	—	4.4	0.008	0.85	0.0	0.05	14.05	0.01	2.079	14.80	0.98	7.1	92.6	0.2	-4.00	0.46	0.70	1.15	4.4	0.003	0.84	0.0	0.04	16.48	0.00	2.595	7.15	4.26	2.0	98.0	0.0	2.12	3.42	0.47	0.72	1.33	3098	420	3	0	1	0	0	logfile
✔	6Y97	10733	2024-12-27	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.17	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.003	0.70	0.0	0.04	13.29	0.00	2.557	12.52	0.00	6.7	93.3	0.0	0.59	0.85	0.71	0.72	—	4366	564	4	0	0	0	0	logfile

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