Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Lo8	0935	2024-12-28	2020-01-04	3.83	3.89	—	3.6	0.005	0.87	0.0	0.05	14.88	0.01	2.242	5.11	0.46	3.7	96.1	0.2	-3.08	0.65	0.79	1.72	3.6	0.005	1.09	1.0	0.05	17.40	0.00	2.255	13.37	3.89	5.1	94.8	0.1	1.22	0.90	0.66	0.79	1.53	7972	997	10	0	0	0	0	logfile
✔	6VFE	21160	2024-12-30	2020-01-03	3.9	4.13	—	4.0	0.003	0.75	0.0	0.05	15.07	0.00	2.120	12.81	0.03	8.3	91.7	0.0	-3.02	0.83	0.74	1.40	4.0	0.005	0.78	0.0	0.05	17.23	0.00	2.473	11.83	3.02	12.6	87.4	0.0	-3.87	0.57	0.84	0.76	1.27	61908	7887	33	0	0	0	0	logfile
✔	6TU3	10586	2024-12-27	2020-01-02	2.7	2.82	2.74	2.8	0.006	0.81	0.0	0.05	16.10	0.01	1.264	9.26	8.29	5.8	94.2	0.0	-2.57	0.76	0.83	2.83	2.8	0.004	0.70	0.0	0.05	17.48	0.01	2.287	5.11	5.07	4.5	95.5	0.0	-0.11	0.56	0.76	0.85	2.61	47002	6158	28	0	0	0	0	logfile
✔	6VEF	21156	2024-12-30	2019-12-31	4.08	4.14	—	4.1	0.009	1.19	0.0	0.07	11.76	0.01	1.866	12.07	0.00	10.4	89.5	0.1	-4.48	0.77	0.80	—	4.1	0.005	0.80	0.0	0.05	13.19	0.00	2.324	14.41	0.07	9.2	90.8	0.0	-2.06	1.05	0.77	0.80	—	13414	1688	4	0	4	0	0	logfile
✔	6VEC	21155	2024-12-28	2019-12-31	3.9	3.99	—	3.9	0.008	1.02	0.0	0.05	10.32	0.01	1.923	3.67	0.95	7.2	92.3	0.5	-3.21	0.79	0.82	2.06	3.8	0.004	0.70	0.0	0.04	13.23	0.00	1.930	7.07	1.09	5.0	94.7	0.3	0.42	1.64	0.80	0.86	1.64	53064	6721	33	0	22	0	0	logfile
✔	6LNi	0931	2024-12-27	2019-12-30	2.702	2.94	—	2.9	0.004	0.55	0.0	0.04	14.81	0.00	2.029	10.98	0.00	12.6	87.4	0.0	-6.05	0.48	0.82	5.95	2.9	0.003	0.58	0.0	0.05	19.47	0.00	2.619	9.61	1.40	10.3	89.7	0.0	-3.65	1.15	0.53	0.86	5.01	4920	600	10	0	0	0	0	logfile
✔	6LN9	0928	2024-12-28	2019-12-28	3.4	3.61	3.06	3.6	0.003	0.54	0.0	0.04	12.32	0.00	2.075	7.70	0.00	4.1	95.9	0.0	-3.36	0.63	0.73	1.41	3.6	0.004	0.97	1.0	0.05	15.02	0.00	1.915	9.07	2.15	4.4	95.6	0.0	-0.30	0.52	0.62	0.75	1.03	7612	987	2	0	2	0	0	logfile
✔	6LN6	0925	2024-12-28	2019-12-28	2.9	3.03	2.87	3.0	0.005	0.64	0.0	0.04	12.49	0.00	2.035	6.53	0.00	2.0	98.0	0.0	-3.94	0.65	0.82	3.55	3.0	0.003	0.54	0.0	0.04	15.73	0.00	2.034	5.77	1.50	1.4	98.6	0.0	0.89	0.45	0.67	0.84	2.48	7836	1010	2	0	4	0	0	logfile
✔	6LN8	0927	2024-12-28	2019-12-28	3.1	3.26	3.33	3.3	0.003	0.56	0.0	0.04	12.81	0.00	2.051	6.74	0.00	3.0	97.0	0.0	-2.71	0.70	0.80	2.37	3.3	0.002	0.54	0.0	0.04	15.27	0.00	1.313	7.51	2.11	2.6	97.4	0.0	0.46	0.46	0.68	0.82	1.83	7739	1003	2	0	2	0	0	logfile
✔	6LN5	0924	2024-12-28	2019-12-28	2.8	2.93	2.78	2.9	0.005	0.63	0.0	0.04	12.83	0.00	2.027	5.32	0.12	2.0	98.0	0.0	-4.16	0.68	0.83	3.56	2.9	0.003	0.57	0.0	0.04	16.25	0.00	2.197	4.82	2.43	1.9	98.1	0.0	0.99	0.42	0.68	0.85	2.88	7840	1011	2	0	4	0	0	logfile
✔	6LN7	0926	2024-12-28	2019-12-28	2.8	2.90	2.71	2.9	0.005	0.65	0.0	0.04	12.20	0.00	2.101	5.64	0.00	2.3	97.7	0.0	-3.93	0.70	0.85	3.69	2.9	0.003	0.60	0.0	0.04	16.72	0.00	2.217	5.26	1.62	2.2	97.8	0.0	0.85	0.48	0.70	0.86	3.01	7840	1011	2	0	4	0	0	logfile
✔	6LMW	0922	2024-12-29	2019-12-26	3.4	3.55	3.21	3.5	0.007	0.91	0.0	0.05	15.33	0.01	2.022	2.21	0.63	1.6	98.4	0.0	-5.34	0.53	0.73	3.03	3.5	0.003	0.62	0.0	0.04	16.36	0.00	2.633	4.64	2.83	1.6	98.4	0.0	2.01	0.42	0.66	0.83	2.35	11624	1472	8	0	0	0	0	logfile
✔	6LML	0918	2024-12-28	2019-12-26	3.9	4.02	—	3.9	0.006	0.96	0.0	0.06	15.40	0.01	2.260	7.25	0.51	8.8	91.2	0.0	-5.53	0.69	0.80	1.70	3.9	0.004	0.76	0.0	0.04	16.56	0.00	2.473	11.04	4.46	7.7	92.3	0.0	-2.53	1.03	0.69	0.80	0.93	9438	1219	6	0	0	0	0	logfile
✔	6LMX	0923	2024-12-31	2019-12-26	3.4	3.53	3.23	3.5	0.019	1.32	0.0	0.07	15.24	0.01	2.011	4.67	1.26	2.1	97.9	0.0	-6.20	0.60	0.78	2.56	3.5	0.003	0.66	0.0	0.04	16.19	0.01	2.541	4.83	2.87	2.7	97.3	0.0	2.35	1.51	0.65	0.81	1.07	15588	2160	9	0	0	0	0	logfile
✔	6LLY	0915	2024-12-28	2019-12-24	2.8	2.92	2.72	2.9	0.003	0.60	0.0	0.04	12.24	0.00	2.043	6.20	0.12	3.1	96.9	0.0	-4.03	0.66	0.79	2.62	2.9	0.003	0.59	0.0	0.04	15.53	0.00	2.012	6.65	2.79	3.2	96.8	0.0	1.08	0.49	0.63	0.80	2.08	7774	1006	2	0	2	0	0	logfile
✔	6VD7	21150	2024-12-31	2019-12-23	3.02	3.29	—	3.3	0.008	0.76	0.0	0.05	13.38	0.00	2.029	6.84	0.78	11.7	88.3	0.0	-2.54	0.69	0.85	2.53	3.3	0.003	0.65	0.0	0.04	15.65	0.00	2.528	6.44	2.33	7.6	92.4	0.0	0.48	0.42	0.67	0.84	2.07	16506	2079	7	0	0	0	0	logfile
✔	6LLE	0912	2024-12-28	2019-12-23	2.9	3.06	2.85	3.0	0.005	0.63	0.0	0.04	13.04	0.00	2.050	6.54	0.00	2.7	97.3	0.0	-1.87	0.67	0.82	3.28	3.0	0.003	0.54	0.0	0.04	16.76	0.00	2.164	5.91	2.41	2.3	97.7	0.0	1.05	0.45	0.69	0.84	2.69	7916	1020	2	0	4	0	0	logfile
✔	6VCD	21149	2024-12-28	2019-12-20	3.0	3.21	—	3.2	0.005	0.70	0.0	0.04	14.13	0.00	2.170	9.40	0.11	10.1	89.7	0.2	-4.83	0.73	0.82	3.84	3.2	0.004	0.68	0.0	0.04	16.36	0.00	2.519	7.55	2.34	8.3	91.6	0.1	-1.46	0.46	0.72	0.83	3.11	8082	1033	4	0	1	0	0	logfile
✔	6VAM	21143	2024-12-30	2019-12-17	3.63	4.11	—	4.0	0.005	0.84	0.0	0.04	14.63	0.00	2.024	9.78	0.00	7.3	92.7	0.0	-1.89	0.65	0.76	2.23	4.0	0.003	0.67	0.0	0.04	16.03	0.00	2.507	5.35	0.49	4.1	95.9	0.0	2.55	0.48	0.64	0.78	2.45	13360	1712	8	0	0	0	0	logfile
✔	6VAB	21135	2024-12-27	2019-12-17	4.9	6.51	—	6.8	0.005	0.91	0.0	0.06	8.70	0.01	2.264	14.98	0.00	6.8	93.2	0.0	-3.84	0.71	0.69	—	6.6	0.002	0.63	0.0	0.04	4.29	0.00	2.555	1.33	0.00	4.4	95.6	0.0	0.08	1.87	0.72	0.67	—	4642	938	4	0	0	0	0	logfile

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