Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6LTN	0975	2024-12-30	2020-01-23	3.1	3.48	3.04	3.5	0.006	0.95	0.0	0.05	16.29	0.01	2.033	2.43	1.38	4.7	95.3	0.0	-6.39	0.65	0.79	2.98	3.4	0.004	0.74	0.0	0.04	17.40	0.01	2.489	7.64	4.06	3.2	96.8	0.0	0.08	1.20	0.65	0.81	3.00	13615	1708	7	0	0	0	0	logfile
✔	6LTH	0968	2024-12-31	2020-01-22	3.0	3.24	—	3.1	0.006	0.72	1.0	0.05	15.07	0.01	2.174	12.03	0.12	4.6	95.4	0.0	-3.45	0.80	0.83	2.97	3.1	0.004	0.72	0.0	0.04	17.35	0.01	2.342	9.13	2.13	3.3	96.7	0.0	1.27	1.23	0.81	0.85	2.59	14970	1845	9	0	1	0	0	logfile
✔	6VL5	21230	2024-12-31	2020-01-22	4.5	4.57	4.20	4.4	0.019	1.72	0.0	0.10	11.99	0.01	2.242	0.64	0.20	1.2	98.8	0.0	0.88	0.79	0.80	—	4.4	0.012	1.26	0.0	0.06	12.74	0.01	2.021	27.67	0.00	4.8	94.8	0.4	-1.11	0.96	0.78	0.79	—	15039	1719	42	0	105	0	0	logfile
✔	6VK1	21223	2024-12-28	2020-01-18	3.9	3.99	—	3.9	0.003	0.59	0.0	0.04	14.77	0.00	2.245	10.65	0.13	4.4	95.6	0.0	-1.86	0.62	0.79	1.42	3.9	0.003	0.76	0.0	0.04	17.39	0.00	2.472	9.75	1.90	4.2	95.8	0.0	1.73	1.54	0.61	0.79	1.25	7259	882	2	0	0	0	0	logfile
✔	6VJY	21220	2024-12-28	2020-01-18	4.3	4.47	—	4.3	0.003	0.64	0.0	0.04	14.40	0.00	2.223	12.37	0.13	4.1	95.9	0.0	-1.62	0.70	0.81	—	4.3	0.003	0.68	0.0	0.04	14.33	0.00	2.399	8.22	0.13	3.5	96.5	0.0	1.80	1.40	0.69	0.79	—	7266	883	2	0	0	0	0	logfile
✔	6VK0	21222	2024-12-29	2020-01-18	4.1	4.29	—	4.2	0.007	0.84	1.0	0.05	14.84	0.01	2.198	17.61	0.19	6.7	93.3	0.0	-3.49	0.60	0.78	—	4.2	0.004	0.74	0.0	0.04	14.68	0.00	2.422	10.50	0.10	4.6	95.4	0.0	0.37	0.79	0.59	0.77	—	9559	1160	4	0	0	0	0	logfile
✔	6VJZ	21221	2024-12-28	2020-01-18	4.3	4.41	—	4.3	0.006	0.83	0.0	0.05	14.50	0.00	2.195	21.73	0.10	6.2	93.8	0.1	-3.21	0.64	0.79	—	4.3	0.003	0.70	0.0	0.04	14.55	0.00	2.409	10.50	0.00	4.2	95.8	0.0	1.47	1.65	0.62	0.78	—	8996	1093	4	0	0	0	0	logfile
✔	6LRR	0959	2024-12-26	2020-01-16	3.37	3.45	—	3.4	0.014	1.22	0.0	0.07	11.04	0.01	2.274	9.33	0.52	7.6	92.3	0.1	-5.11	0.71	0.84	3.59	3.4	0.005	0.70	0.0	0.05	14.93	0.01	2.405	13.18	2.48	5.8	94.2	0.0	-1.81	0.56	0.72	0.84	2.75	43706	5494	24	0	0	0	0	logfile
✔	6LRQ	0958	2024-12-27	2020-01-16	3.49	3.59	—	4.0	0.009	0.85	0.0	0.05	11.88	0.00	2.205	20.30	0.00	14.8	85.2	0.0	-4.51	0.46	0.71	1.87	3.6	0.005	0.76	0.0	0.05	15.20	0.00	2.474	13.97	8.52	12.0	88.0	0.0	-2.84	0.83	0.45	0.70	1.16	2628	378	6	0	0	0	0	logfile
✔	6XTB	10618	2024-12-27	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.007	1.34	0.0	0.05	10.99	0.01	2.464	12.02	0.00	28.6	71.4	0.0	-6.17	2.01	0.34	0.65	—	1161	235	1	0	0	0	0	logfile
✔	6LR0	31583	2024-12-29	2020-01-15	3.5	3.87	—	3.8	0.011	1.38	0.0	0.07	13.07	0.01	2.291	5.77	0.88	11.0	88.9	0.1	-6.35	0.66	0.78	1.71	3.8	0.003	0.76	0.0	0.04	15.74	0.00	2.514	7.80	1.95	6.5	93.5	0.0	-3.66	0.83	0.64	0.75	1.10	9576	1230	1	0	0	0	0	logfile
✔	6VJA	21212	2024-12-29	2020-01-15	3.3	3.74	3.48	3.6	0.014	1.27	0.0	0.08	12.61	0.01	2.193	4.71	0.49	4.2	95.7	0.1	0.64	0.61	0.80	2.94	3.7	0.003	0.67	0.0	0.04	14.83	0.00	2.525	4.65	2.73	2.9	97.1	0.0	1.71	1.23	0.60	0.79	2.57	9342	1204	8	0	6	0	0	logfile
✔	6LQJ	0947	2024-12-31	2020-01-13	3.24	3.40	3.06	3.4	0.007	0.74	0.0	0.05	16.29	0.00	2.216	11.27	5.34	9.1	90.9	0.0	-3.28	0.74	0.84	2.87	3.4	0.004	0.65	0.0	0.05	17.00	0.00	2.531	9.59	4.26	9.1	90.9	0.0	-0.55	0.43	0.71	0.84	2.92	17100	2214	18	0	0	0	0	logfile
✔	6VHL	21207	2024-12-27	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	14.51	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.6	0.003	0.75	0.0	0.04	16.38	0.00	2.631	2.49	2.99	8.0	92.0	0.0	-3.08	2.72	0.27	0.69	3.28	1190	158	4	0	0	0	0	logfile
✔	6VHH	21205	2024-12-31	2020-01-09	2.97	3.96	2.99	3.5	0.015	1.07	1.0	0.18	15.41	0.01	2.053	12.06	0.95	7.8	92.0	0.2	-2.75	0.84	0.78	3.32	3.5	0.007	0.82	0.0	0.05	14.76	0.00	2.470	8.27	1.76	6.5	93.5	0.0	-0.78	1.23	0.85	0.84	3.07	14219	1821	8	0	15	0	0	logfile
✔	6VHA	21201	2024-12-27	2020-01-09	4.3	4.35	—	7.8	0.007	1.02	0.0	0.05	15.14	0.01	2.319	26.84	2.13	12.4	87.6	0.0	-4.78	0.55	0.54	—	4.1	0.003	0.69	0.0	0.05	13.64	0.00	2.630	9.82	0.00	10.2	89.8	0.0	-4.03	3.34	0.57	0.60	—	2439	321	3	0	0	0	0	logfile
✔	6VH7	21200	2024-12-27	2020-01-09	3.8	3.84	—	4.1	0.007	1.03	0.0	0.05	15.14	0.01	2.318	28.35	2.13	12.4	87.6	0.0	-4.78	0.54	0.62	2.62	4.0	0.004	0.86	0.0	0.05	16.89	0.00	2.512	12.12	2.48	12.4	87.6	0.0	-4.36	3.67	0.59	0.69	1.89	4878	642	6	0	0	0	0	logfile
✔	6TUQ	10594	2024-12-31	2020-01-08	3.9	4.52	—	4.0	0.009	1.01	0.0	0.05	11.22	0.00	2.191	8.45	3.12	0.0	100.0	0.0	-6.69	0.68	0.88	0.54	4.0	0.002	0.69	0.0	0.04	12.36	0.00	2.645	9.32	0.44	0.0	100.0	0.0	-0.22	1.65	0.69	0.88	1.06	16100	2300	50	0	0	0	0	logfile
✔	6LoM	0938	2024-12-26	2020-01-06	3.73	3.97	—	3.9	0.007	1.17	0.0	0.06	13.55	0.01	2.023	8.25	1.81	11.0	89.0	0.0	-4.24	0.67	0.72	1.88	3.9	0.003	0.70	0.0	0.04	15.96	0.00	2.469	11.36	5.59	6.8	93.2	0.0	0.27	0.84	0.66	0.72	1.74	44720	5900	20	0	0	0	0	logfile
✔	6VFL	21186	2024-12-31	2020-01-05	4.14	4.24	4.09	4.2	0.020	1.69	0.0	0.10	11.83	0.01	2.247	1.36	0.20	1.4	98.6	0.0	0.90	0.77	0.84	—	4.2	0.003	0.68	0.0	0.05	11.73	0.00	2.422	8.06	0.00	2.8	97.1	0.1	0.50	1.43	0.76	0.84	—	14925	1710	42	0	102	0	0	logfile

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