Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BF1	44486	2024-09-28	2024-04-16	3.1	2.28	3.13	3.8	0.003	0.48	0.0	0.04	14.85	0.00	2.174	7.67	0.00	5.3	94.7	0.0	0.71	0.47	0.28	0.12	2.0	0.003	0.57	0.0	0.04	17.08	0.00	2.483	9.41	1.90	4.5	95.5	0.0	0.67	1.45	0.72	0.73	2.05	18158	2244	2	0	0	0	0	logfile
✔	9BF1	44486	2025-01-22	2024-04-16	3.1	2.28	3.13	3.8	0.003	0.48	0.0	0.04	14.85	0.00	2.174	7.67	0.00	5.3	94.7	0.0	0.71	0.47	0.28	0.12	2.0	0.003	0.56	0.0	0.04	17.07	0.00	2.518	8.77	1.65	4.4	95.6	0.0	0.71	1.45	0.72	0.73	1.93	18158	2244	2	0	0	0	0	logfile
✔	9BF6	44491	2025-01-23	2024-04-16	4.5	7.51	4.66	4.5	0.003	0.67	2.0	0.05	12.77	0.00	2.022	3.80	0.10	8.4	91.4	0.2	-1.57	0.83	0.78	—	4.5	0.003	0.69	0.0	0.05	12.86	0.00	2.356	11.90	0.00	8.8	91.0	0.1	-1.52	0.87	0.84	0.81	—	20330	2367	39	0	130	0	0	logfile
✔	9BER	44482	2025-01-23	2024-04-16	4.1	4.97	4.17	4.1	0.005	0.83	1.0	0.06	16.15	0.01	1.899	5.81	0.24	7.4	92.5	0.1	-2.06	0.83	0.81	—	4.2	0.012	0.68	0.0	0.05	12.65	0.00	2.395	11.77	0.00	8.0	92.0	0.0	-1.73	0.83	0.84	0.84	—	20350	2416	36	0	100	0	0	logfile
✔	9BER	44482	2024-08-07	2024-04-16	4.1	4.97	4.17	4.1	0.005	0.83	1.0	0.06	16.15	0.01	1.899	5.81	0.24	7.4	92.5	0.1	-2.06	0.83	0.81	—	4.2	0.012	0.73	0.0	0.05	12.72	0.01	2.398	13.27	0.00	8.1	91.9	0.0	-1.66	0.81	0.84	0.85	—	20350	2416	36	0	100	0	0	logfile
✔	9BER	44482	2024-09-28	2024-04-16	4.1	4.97	4.17	4.1	0.005	0.83	1.0	0.06	16.15	0.01	1.899	5.81	0.24	7.4	92.5	0.1	-2.06	0.83	0.81	—	4.2	0.012	0.73	0.0	0.05	12.72	0.01	2.398	13.27	0.00	8.1	91.9	0.0	-1.66	0.81	0.84	0.85	—	20350	2416	36	0	100	0	0	logfile
✔	8Z40	39759	2025-01-24	2024-04-16	3.26	3.96	3.30	3.6	0.003	0.66	0.0	0.04	16.15	0.01	2.201	7.97	0.13	5.2	94.6	0.2	0.15	0.88	0.86	2.25	3.6	0.003	0.59	0.0	0.04	16.53	0.00	2.462	5.31	1.56	4.9	95.0	0.1	0.74	0.35	0.88	0.87	2.09	21893	2810	6	0	0	0	0	logfile
✔	8Z3o	39749	2025-04-26	2024-04-15	3.3	2.24	3.16	2.1	0.008	0.98	1.0	0.06	14.14	0.01	2.386	9.88	0.98	7.4	92.6	0.0	-0.69	0.65	0.78	5.58	2.0	0.003	0.60	0.0	0.04	15.99	0.00	2.572	3.86	0.00	2.8	97.2	0.0	0.62	0.86	0.66	0.79	3.52	2159	286	1	0	0	0	0	logfile
✔	9BEi	44479	2024-08-03	2024-04-15	4.16	4.77	4.14	4.2	0.003	0.78	0.0	0.05	14.43	0.01	2.016	21.15	0.00	9.2	90.7	0.1	-1.93	0.85	0.73	—	4.2	0.004	0.77	0.0	0.05	14.62	0.01	2.461	21.84	0.00	9.3	90.6	0.1	-1.64	0.52	0.85	0.74	—	6649	862	5	0	0	0	0	logfile
✔	9BEi	44479	2025-01-14	2024-04-15	4.16	4.77	4.14	4.2	0.003	0.78	0.0	0.05	14.43	0.01	2.016	21.15	0.00	9.2	90.7	0.1	-1.93	0.85	0.73	—	4.2	0.003	0.73	0.0	0.04	14.57	0.01	2.444	15.81	0.00	8.1	91.8	0.1	-1.44	0.43	0.85	0.73	—	6649	862	5	0	0	0	0	logfile
✔	9BEi	44479	2025-02-11	2024-04-15	4.16	4.77	4.14	4.2	0.003	0.78	0.0	0.05	14.43	0.01	2.016	21.15	0.00	9.2	90.7	0.1	-1.93	0.85	0.73	—	4.2	0.003	0.73	0.0	0.04	14.57	0.01	2.444	15.81	0.00	8.1	91.8	0.1	-1.44	0.43	0.85	0.73	—	6649	862	5	0	0	0	0	logfile
✔	9BEi	44479	2025-03-11	2024-04-15	4.16	4.77	4.14	4.2	0.003	0.78	0.0	0.05	14.43	0.01	2.016	21.15	0.00	9.2	90.7	0.1	-1.93	0.85	0.73	—	4.2	0.002	0.72	0.0	0.04	14.43	0.00	2.455	13.44	0.00	7.6	92.3	0.1	-1.22	0.45	0.84	0.72	—	6649	862	5	0	0	0	0	logfile
✔	9BEi	44479	2025-04-28	2024-04-15	4.16	4.77	4.14	4.2	0.003	0.79	0.0	0.05	14.43	0.01	2.016	21.15	0.00	9.2	90.7	0.1	-1.93	0.85	0.73	—	4.2	0.003	0.75	0.0	0.05	14.46	0.01	2.453	15.73	0.00	8.3	91.5	0.1	-1.46	0.45	0.85	0.73	—	6649	862	5	0	0	0	0	logfile
✔	9BEi	44479	2024-07-19	2024-04-15	4.16	4.77	4.14	4.2	0.003	0.78	0.0	0.05	14.43	0.01	2.016	21.15	0.00	9.2	90.7	0.1	-1.93	0.85	0.73	—	4.2	0.005	0.81	0.0	0.05	14.48	0.01	2.094	30.93	0.00	11.7	88.3	0.0	-1.85	0.48	0.85	0.74	—	6649	862	5	0	0	0	0	logfile
✔	9BEi	44479	2024-09-24	2024-04-15	4.16	4.77	4.14	4.2	0.003	0.78	0.0	0.05	14.43	0.01	2.016	21.15	0.00	9.2	90.7	0.1	-1.93	0.85	0.73	—	4.2	0.004	0.77	0.0	0.05	14.62	0.01	2.461	21.84	0.00	9.3	90.6	0.1	-1.64	0.52	0.85	0.74	—	6649	862	5	0	0	0	0	logfile
✔	9BEi	44479	2024-10-10	2024-04-15	4.16	4.77	4.14	4.2	0.003	0.78	0.0	0.05	14.43	0.01	2.016	21.15	0.00	9.2	90.7	0.1	-1.93	0.85	0.73	—	4.2	0.004	0.77	0.0	0.05	14.62	0.01	2.461	21.84	0.00	9.3	90.6	0.1	-1.64	0.52	0.85	0.74	—	6649	862	5	0	0	0	0	logfile
✔	9BEi	44479	2024-11-14	2024-04-15	4.16	4.77	4.14	4.2	0.003	0.78	0.0	0.05	14.43	0.01	2.016	21.15	0.00	9.2	90.7	0.1	-1.93	0.85	0.73	—	4.2	0.004	0.77	0.0	0.05	14.62	0.01	2.461	21.84	0.00	9.3	90.6	0.1	-1.64	0.52	0.85	0.74	—	6649	862	5	0	0	0	0	logfile
✔	9BEi	44479	2024-12-27	2024-04-15	4.16	4.77	4.14	4.2	0.003	0.78	0.0	0.05	14.43	0.01	2.016	21.15	0.00	9.2	90.7	0.1	-1.93	0.85	0.73	—	4.2	0.004	0.77	0.0	0.05	14.62	0.01	2.461	21.84	0.00	9.3	90.6	0.1	-1.64	0.52	0.85	0.74	—	6649	862	5	0	0	0	0	logfile
✔	8Z3M	39747	2025-04-29	2024-04-15	2.9	2.28	2.83	2.0	0.006	0.72	1.0	0.06	12.81	0.00	1.867	10.73	0.12	4.0	96.0	0.0	0.49	0.78	0.81	3.34	2.0	0.003	0.60	0.0	0.04	15.21	0.00	2.421	7.26	2.12	3.1	96.9	0.0	0.81	0.88	0.79	0.82	2.93	8395	1147	5	0	0	0	0	logfile
✔	9BEE	44477	2025-04-26	2024-04-15	3.4	3.98	3.20	3.9	0.013	1.84	1.0	0.10	11.72	0.02	2.467	4.56	0.00	11.9	88.1	0.0	-2.32	0.47	0.59	1.69	3.9	0.002	0.57	0.0	0.05	15.77	0.00	2.346	6.84	3.45	4.9	95.1	0.0	-0.50	1.59	0.50	0.68	2.14	3046	189	2	0	7	0	1501	logfile

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