Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9AZ4	44012	2025-01-25	2024-03-10	3.37	4.52	—	2.1	0.007	1.06	0.0	0.06	13.82	0.01	2.069	2.58	0.00	3.5	96.4	0.0	-2.13	0.89	0.84	1.76	2.1	0.004	0.65	0.0	0.04	14.51	0.00	1.932	7.86	0.43	3.2	96.8	0.0	1.24	0.38	0.89	0.84	1.53	23865	3015	14	0	12	0	0	logfile
✔	9AZ4	44012	2024-09-30	2024-03-10	3.37	4.52	—	2.1	0.007	1.06	0.0	0.06	13.82	0.01	2.069	2.58	0.00	3.5	96.4	0.0	-2.13	0.89	0.84	1.76	2.1	0.003	0.62	0.0	0.04	14.49	0.00	1.960	7.00	0.35	3.1	96.9	0.0	1.34	0.37	0.89	0.85	1.41	23865	3015	14	0	12	0	0	logfile
✔	9AZ4	44012	2024-08-08	2024-03-10	3.37	4.52	—	2.1	0.007	1.06	0.0	0.06	13.82	0.01	2.069	2.58	0.00	3.5	96.4	0.0	-2.13	0.89	0.84	1.76	2.1	0.003	0.62	0.0	0.04	14.49	0.00	1.960	7.00	0.35	3.1	96.9	0.0	1.34	0.37	0.89	0.85	1.41	23865	3015	14	0	12	0	0	logfile
✔	9AZ4	44012	2024-07-23	2024-03-10	3.37	4.52	—	2.1	0.007	1.06	0.0	0.06	13.82	0.01	2.069	2.58	0.00	3.5	96.4	0.0	-2.13	0.89	0.84	1.76	2.1	0.004	0.78	0.0	0.04	14.59	0.00	1.903	13.37	0.54	4.0	96.0	0.0	1.03	0.40	0.89	0.84	1.58	23865	3015	14	0	12	0	0	logfile
✔	8YN1	39411	2025-01-22	2024-03-10	3.09	2.91	3.04	2.9	0.008	0.91	0.0	0.05	15.15	0.01	2.145	8.06	0.00	5.3	94.5	0.1	-1.49	0.76	0.79	3.15	3.0	0.002	0.55	0.0	0.04	16.55	0.00	2.019	4.36	1.40	3.2	96.8	0.0	0.57	0.94	0.79	0.83	2.29	12186	1495	5	0	2	0	0	logfile
✔	8YN9	39419	2025-03-13	2024-03-10	2.3	2.56	2.39	2.5	0.004	0.63	0.0	0.06	10.63	0.00	2.237	4.32	0.73	1.5	98.5	0.0	1.12	0.70	0.84	5.10	2.5	0.003	0.86	1.0	0.04	13.42	0.00	2.364	5.93	1.88	2.5	97.5	0.0	1.63	0.38	0.71	0.85	4.42	9048	1130	6	0	8	2	0	logfile
✔	8YN9	39419	2025-02-13	2024-03-10	2.3	2.56	2.39	2.5	0.004	0.63	0.0	0.06	10.63	0.00	2.237	4.32	0.73	1.5	98.5	0.0	1.12	0.70	0.84	5.10	2.6	0.002	0.51	0.0	0.04	13.41	0.00	2.524	5.26	1.57	2.2	97.8	0.0	1.68	0.38	0.71	0.85	4.29	9048	1130	6	0	8	2	0	logfile
✔	8YN9	39419	2025-01-16	2024-03-10	2.3	2.56	2.39	2.5	0.004	0.63	0.0	0.06	10.63	0.00	2.237	4.32	0.73	1.5	98.5	0.0	1.12	0.70	0.84	5.10	2.6	0.002	0.51	0.0	0.04	13.41	0.00	2.524	5.26	1.57	2.2	97.8	0.0	1.68	0.38	0.71	0.85	4.29	9048	1130	6	0	8	2	0	logfile
✔	8YN9	39419	2024-12-28	2024-03-10	2.3	2.56	2.39	2.5	0.004	0.63	0.0	0.06	10.63	0.00	2.237	4.32	0.73	1.5	98.5	0.0	1.12	0.70	0.84	5.10	2.5	0.004	0.57	0.0	0.04	13.64	0.00	2.505	4.60	1.57	2.2	97.8	0.0	1.54	0.38	0.71	0.85	4.55	9048	1130	6	0	8	2	0	logfile
✔	8YN9	39419	2024-11-15	2024-03-10	2.3	2.56	2.39	2.5	0.004	0.63	0.0	0.06	10.63	0.00	2.237	4.32	0.73	1.5	98.5	0.0	1.12	0.70	0.84	5.10	2.5	0.004	0.57	0.0	0.04	13.64	0.00	2.505	4.60	1.57	2.2	97.8	0.0	1.54	0.38	0.71	0.85	4.55	9048	1130	6	0	8	2	0	logfile
✔	8YN2	39412	2024-11-15	2024-03-10	2.66	2.92	2.71	2.9	0.003	0.56	0.0	0.06	9.78	0.00	2.180	4.42	0.64	1.5	98.5	0.0	1.29	0.71	0.85	4.63	2.9	0.003	0.54	0.0	0.04	14.23	0.00	2.528	4.31	1.59	2.3	97.7	0.0	2.14	0.49	0.71	0.85	3.51	8979	1131	6	0	6	0	0	logfile
✔	8YN2	39412	2025-01-15	2024-03-10	2.66	2.92	2.71	2.9	0.003	0.56	0.0	0.06	9.78	0.00	2.180	4.42	0.64	1.5	98.5	0.0	1.29	0.71	0.85	4.63	2.9	0.002	0.53	0.0	0.04	13.92	0.00	2.529	4.54	1.91	2.2	97.8	0.0	2.16	0.49	0.71	0.84	3.40	8979	1131	6	0	6	0	0	logfile
✔	8YN2	39412	2025-02-13	2024-03-10	2.66	2.92	2.71	2.9	0.003	0.56	0.0	0.06	9.78	0.00	2.180	4.42	0.64	1.5	98.5	0.0	1.29	0.71	0.85	4.63	2.9	0.002	0.53	0.0	0.04	13.92	0.00	2.529	4.54	1.91	2.2	97.8	0.0	2.16	0.49	0.71	0.84	3.40	8979	1131	6	0	6	0	0	logfile
✔	8YN2	39412	2025-03-13	2024-03-10	2.66	2.92	2.71	2.9	0.003	0.56	0.0	0.06	9.78	0.00	2.180	4.42	0.64	1.5	98.5	0.0	1.29	0.71	0.85	4.63	2.9	0.002	0.54	0.0	0.04	14.03	0.00	2.518	4.65	2.02	2.3	97.7	0.0	2.07	0.48	0.71	0.85	3.55	8979	1131	6	0	6	0	0	logfile
✔	8YN2	39412	2024-12-28	2024-03-10	2.66	2.92	2.71	2.9	0.003	0.56	0.0	0.06	9.78	0.00	2.180	4.42	0.64	1.5	98.5	0.0	1.29	0.71	0.85	4.63	2.9	0.003	0.54	0.0	0.04	14.23	0.00	2.528	4.31	1.59	2.3	97.7	0.0	2.14	0.49	0.71	0.85	3.51	8979	1131	6	0	6	0	0	logfile
✔	8YMQ	39403	2025-01-17	2024-03-09	2.6	3.01	2.76	2.9	0.011	1.48	10.0	0.11	23.72	0.01	1.982	10.17	32.64	8.2	89.6	2.2	-3.41	0.55	0.71	2.94	3.0	0.004	0.70	0.0	0.04	18.52	0.01	2.455	7.16	4.32	6.1	93.9	0.0	0.75	1.21	0.61	0.87	2.83	10524	1302	4	0	4	0	0	logfile
✔	8YMQ	39403	2024-10-11	2024-03-09	2.6	3.01	2.76	2.9	0.011	1.48	10.0	0.11	23.72	0.01	1.982	10.17	32.64	8.2	89.6	2.2	-3.41	0.55	0.71	2.94	3.0	0.003	0.70	0.0	0.04	18.78	0.01	2.473	7.30	5.04	6.5	93.4	0.2	0.68	1.21	0.60	0.87	2.94	10524	1302	4	0	4	0	0	logfile
✔	8YMP	39402	2025-02-14	2024-03-09	2.6	3.14	2.77	3.2	0.008	1.42	12.0	0.09	25.41	0.01	2.057	14.00	37.57	10.6	87.2	2.2	-3.93	0.45	0.50	1.19	3.1	0.003	0.85	0.0	0.04	18.76	0.01	2.438	12.55	3.23	6.1	93.9	0.0	0.26	1.91	0.52	0.72	2.83	9570	1184	4	0	2	0	0	logfile
✔	8YMQ	39403	2024-12-29	2024-03-09	2.6	3.01	2.76	2.9	0.011	1.48	10.0	0.11	23.72	0.01	1.982	10.17	32.64	8.2	89.6	2.2	-3.41	0.55	0.71	2.94	3.0	0.003	0.70	0.0	0.04	18.78	0.01	2.473	7.30	5.04	6.5	93.4	0.2	0.68	1.21	0.60	0.87	2.94	10524	1302	4	0	4	0	0	logfile
✔	8YMQ	39403	2024-11-16	2024-03-09	2.6	3.01	2.76	2.9	0.011	1.48	10.0	0.11	23.72	0.01	1.982	10.17	32.64	8.2	89.6	2.2	-3.41	0.55	0.71	2.94	3.0	0.003	0.70	0.0	0.04	18.78	0.01	2.473	7.30	5.04	6.5	93.4	0.2	0.68	1.21	0.60	0.87	2.94	10524	1302	4	0	4	0	0	logfile

• ← previous
• Page 168 of 5115
• next →