The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 9BWS | 44978 | 2025-04-27 | 2024-05-21 | 2.39 | 3.43 | 2.42 | 3.1 | 0.004 | 0.68 | 0.0 | 0.04 | 14.79 | 0.01 | 2.288 | 2.97 | 0.93 | 4.7 | 95.3 | 0.0 | 4.00 | 0.74 | 0.84 | 3.99 | 3.2 | 0.003 | 0.63 | 0.0 | 0.03 | 15.24 | 0.00 | 2.484 | 2.51 | 0.46 | 4.3 | 95.7 | 0.0 | 4.87 | 2.15 | 0.65 | 0.87 | 3.23 | 4286 | 514 | 4 | 0 | 22 | 0 | 0 | logfile |
✔ | 9BWS | 44978 | 2025-05-10 | 2024-05-21 | 2.39 | 3.43 | 2.42 | 3.1 | 0.004 | 0.68 | 0.0 | 0.04 | 14.79 | 0.01 | 2.288 | 2.97 | 0.93 | 4.7 | 95.3 | 0.0 | 4.00 | 0.74 | 0.84 | 3.99 | 3.2 | 0.004 | 0.64 | 0.0 | 0.03 | 15.29 | 0.00 | 2.502 | 2.17 | 0.69 | 4.3 | 95.7 | 0.0 | 4.73 | 1.38 | 0.65 | 0.87 | 3.25 | 4286 | 514 | 4 | 0 | 22 | 0 | 0 | logfile |
✔ | 8ZLU | 60233 | 2025-05-25 | 2024-05-21 | 2.47 | 2.21 | 2.54 | 1.9 | 0.002 | 0.54 | 0.0 | 0.04 | 19.71 | 0.00 | 2.131 | 5.63 | 4.41 | 6.6 | 93.2 | 0.1 | -0.05 | 0.82 | 0.81 | 3.07 | 1.9 | 0.003 | 0.58 | 0.0 | 0.04 | 19.30 | 0.00 | 2.250 | 4.34 | 3.41 | 7.4 | 92.5 | 0.1 | 0.30 | 1.19 | 0.84 | 0.84 | 3.16 | 27053 | 3322 | 13 | 59 | 2 | 0 | 0 | logfile |
✔ | 8ZLU | 60233 | 2025-06-23 | 2024-05-21 | 2.47 | 2.21 | 2.54 | 1.9 | 0.002 | 0.54 | 0.0 | 0.04 | 19.71 | 0.00 | 2.131 | 5.63 | 4.41 | 6.6 | 93.2 | 0.1 | -0.05 | 0.82 | 0.81 | 3.07 | 1.9 | 0.003 | 0.58 | 0.0 | 0.04 | 19.35 | 0.00 | 2.249 | 4.17 | 3.59 | 7.4 | 92.5 | 0.1 | 0.30 | 1.19 | 0.84 | 0.84 | 3.12 | 27053 | 3322 | 13 | 59 | 2 | 0 | 0 | logfile |
✔ | 8ZM0 | 60234 | 2025-06-04 | 2024-05-21 | 3.1 | 3.18 | 1.79 | 3.3 | 0.009 | 0.53 | 0.0 | 0.05 | 12.83 | 0.00 | 2.710 | 0.22 | 0.00 | 0.0 | 100.0 | 0.0 | -8.10 | 0.52 | 0.83 | 8.98 | 3.2 | 0.072 | 2.93 | 0.0 | 0.28 | 13.82 | 0.02 | 2.357 | 29.86 | 7.53 | 43.5 | 56.5 | 0.0 | -7.84 | 1.57 | 0.56 | 0.87 | 8.98 | 2604 | 248 | 62 | 0 | 0 | 0 | 0 | logfile |
✔ | 9BVQ | 44941 | 2025-04-27 | 2024-05-20 | 3.3 | 3.82 | 3.28 | 3.7 | 0.004 | 1.39 | 0.0 | 0.10 | 15.64 | 0.00 | 2.201 | 2.52 | 1.58 | 1.2 | 98.8 | 0.0 | 0.89 | 0.70 | 0.88 | 3.92 | 3.7 | 0.004 | 0.60 | 0.0 | 0.04 | 13.88 | 0.00 | 2.606 | 3.28 | 1.11 | 3.3 | 96.7 | 0.0 | 2.19 | 1.04 | 0.64 | 0.88 | 3.42 | 5977 | 700 | 6 | 0 | 9 | 0 | 0 | logfile |
✔ | 9BVQ | 44941 | 2025-06-05 | 2024-05-20 | 3.3 | 3.82 | 3.28 | 3.7 | 0.004 | 1.39 | 0.0 | 0.10 | 15.64 | 0.00 | 2.201 | 2.52 | 1.58 | 1.2 | 98.8 | 0.0 | 0.89 | 0.70 | 0.88 | 3.92 | 3.7 | 0.004 | 0.60 | 0.0 | 0.04 | 13.88 | 0.00 | 2.606 | 3.28 | 1.11 | 3.3 | 96.7 | 0.0 | 2.19 | 1.04 | 0.64 | 0.88 | 3.42 | 5977 | 700 | 6 | 0 | 9 | 0 | 0 | logfile |
✔ | 9BVQ | 44941 | 2025-02-11 | 2024-05-20 | 3.3 | 3.82 | 3.27 | 3.7 | 0.003 | 0.47 | 0.0 | 0.10 | 15.64 | 0.00 | 2.201 | 2.52 | 1.58 | 1.2 | 98.8 | 0.0 | 0.89 | 0.70 | 0.88 | 3.92 | 3.7 | 0.003 | 0.58 | 0.0 | 0.04 | 13.78 | 0.00 | 2.590 | 2.86 | 0.95 | 3.2 | 96.8 | 0.0 | 2.09 | 1.04 | 0.64 | 0.88 | 3.34 | 5977 | 700 | 6 | 0 | 9 | 0 | 0 | logfile |
✔ | 9BVQ | 44941 | 2025-03-11 | 2024-05-20 | 3.3 | 3.82 | 3.28 | 3.7 | 0.003 | 0.47 | 0.0 | 0.10 | 15.64 | 0.00 | 2.201 | 2.52 | 1.58 | 1.2 | 98.8 | 0.0 | 0.89 | 0.70 | 0.88 | 3.92 | 3.7 | 0.003 | 0.57 | 0.0 | 0.04 | 13.84 | 0.00 | 2.613 | 2.77 | 0.79 | 3.3 | 96.7 | 0.0 | 2.03 | 1.04 | 0.64 | 0.88 | 3.23 | 5977 | 700 | 6 | 0 | 9 | 0 | 0 | logfile |
✔ | 9BVQ | 44941 | 2025-05-10 | 2024-05-20 | 3.3 | 3.82 | 3.28 | 3.7 | 0.004 | 1.39 | 0.0 | 0.10 | 15.64 | 0.00 | 2.201 | 2.52 | 1.58 | 1.2 | 98.8 | 0.0 | 0.89 | 0.70 | 0.88 | 3.92 | 3.7 | 0.004 | 0.60 | 0.0 | 0.04 | 13.90 | 0.00 | 2.598 | 2.60 | 1.27 | 3.2 | 96.8 | 0.0 | 2.19 | 1.04 | 0.64 | 0.88 | 3.37 | 5977 | 700 | 6 | 0 | 9 | 0 | 0 | logfile |
✔ | 8ZLP | 60232 | 2025-04-27 | 2024-05-20 | 3.5 | 3.09 | 3.03 | 3.4 | 0.007 | 0.55 | 0.0 | 0.05 | 12.26 | 0.00 | 2.368 | 4.84 | 0.00 | 4.2 | 95.8 | 0.0 | -4.52 | 0.48 | 0.91 | 4.59 | 3.4 | 0.002 | 0.48 | 0.0 | 0.05 | 14.79 | 0.00 | 2.616 | 2.48 | 3.43 | 2.8 | 97.2 | 0.0 | -2.90 | 1.91 | 0.47 | 0.90 | 3.82 | 4116 | 588 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 8ZLP | 60232 | 2025-03-05 | 2024-05-20 | 3.5 | 3.09 | 3.03 | 3.4 | 0.007 | 0.55 | 0.0 | 0.05 | 12.26 | 0.00 | 2.368 | 4.84 | 0.00 | 4.2 | 95.8 | 0.0 | -4.52 | 0.48 | 0.91 | 4.59 | 3.4 | 0.002 | 0.48 | 0.0 | 0.05 | 14.79 | 0.00 | 2.616 | 2.48 | 3.43 | 2.8 | 97.2 | 0.0 | -2.90 | 1.91 | 0.47 | 0.90 | 3.82 | 4116 | 588 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 8ZLP | 60232 | 2025-02-11 | 2024-05-20 | 3.5 | 3.09 | 3.05 | 3.4 | 0.007 | 0.55 | 0.0 | 0.05 | 12.26 | 0.00 | 2.368 | 4.84 | 0.00 | 4.2 | 95.8 | 0.0 | -4.52 | 0.48 | 0.91 | 4.59 | 3.4 | 0.007 | 0.63 | 0.0 | 0.05 | 14.80 | 0.00 | 2.604 | 4.96 | 3.43 | 6.2 | 93.8 | 0.0 | -3.12 | 1.91 | 0.46 | 0.91 | 4.12 | 4116 | 588 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 8ZLP | 60232 | 2025-01-13 | 2024-05-20 | 3.5 | 3.09 | 3.05 | 3.4 | 0.007 | 0.55 | 0.0 | 0.05 | 12.26 | 0.00 | 2.368 | 4.84 | 0.00 | 4.2 | 95.8 | 0.0 | -4.52 | 0.48 | 0.91 | 4.59 | 3.4 | 0.007 | 0.63 | 0.0 | 0.05 | 14.80 | 0.00 | 2.604 | 4.96 | 3.43 | 6.2 | 93.8 | 0.0 | -3.12 | 1.91 | 0.46 | 0.91 | 4.12 | 4116 | 588 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 8ZLP | 60232 | 2025-05-09 | 2024-05-20 | 3.5 | 3.09 | 3.03 | 3.4 | 0.007 | 0.55 | 0.0 | 0.05 | 12.26 | 0.00 | 2.368 | 4.84 | 0.00 | 4.2 | 95.8 | 0.0 | -4.52 | 0.48 | 0.91 | 4.59 | 3.4 | 0.007 | 0.63 | 0.0 | 0.05 | 14.80 | 0.00 | 2.604 | 4.96 | 3.43 | 6.2 | 93.8 | 0.0 | -3.12 | 1.91 | 0.46 | 0.91 | 4.12 | 4116 | 588 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 8ZLo | 60231 | 2024-10-09 | 2024-05-20 | 3.1 | 2.98 | 2.81 | 3.3 | 0.015 | 1.52 | 0.0 | 0.08 | 17.15 | 0.01 | 2.063 | 28.08 | 0.00 | 9.4 | 90.6 | 0.0 | -4.08 | 0.25 | 0.57 | 3.84 | 3.1 | 0.007 | 1.05 | 0.0 | 0.06 | 15.25 | 0.00 | 2.597 | 10.40 | 4.82 | 10.2 | 89.8 | 0.0 | -4.11 | 1.95 | 0.51 | 0.88 | 2.55 | 4816 | 660 | 18 | 0 | 10 | 0 | 0 | logfile |
✔ | 8ZLo | 60231 | 2025-02-11 | 2024-05-20 | 3.1 | 2.98 | 2.81 | 3.3 | 0.015 | 1.52 | 0.0 | 0.08 | 17.15 | 0.01 | 2.063 | 28.08 | 0.00 | 9.4 | 90.6 | 0.0 | -4.08 | 0.25 | 0.57 | 3.84 | 3.1 | 0.006 | 0.98 | 0.0 | 0.05 | 14.91 | 0.00 | 2.600 | 9.98 | 3.95 | 10.1 | 89.9 | 0.0 | -4.03 | 1.95 | 0.52 | 0.88 | 3.30 | 4816 | 660 | 18 | 0 | 10 | 0 | 0 | logfile |
✔ | 8ZLo | 60231 | 2025-01-14 | 2024-05-20 | 3.1 | 2.98 | 2.81 | 3.3 | 0.015 | 1.52 | 0.0 | 0.08 | 17.15 | 0.01 | 2.063 | 28.08 | 0.00 | 9.4 | 90.6 | 0.0 | -4.08 | 0.25 | 0.57 | 3.84 | 3.1 | 0.006 | 0.98 | 0.0 | 0.05 | 14.91 | 0.00 | 2.600 | 9.98 | 3.95 | 10.1 | 89.9 | 0.0 | -4.03 | 1.95 | 0.52 | 0.88 | 3.30 | 4816 | 660 | 18 | 0 | 10 | 0 | 0 | logfile |
✔ | 8ZLo | 60231 | 2025-03-06 | 2024-05-20 | 3.1 | 2.98 | 2.80 | 3.3 | 0.015 | 1.52 | 0.0 | 0.08 | 17.15 | 0.01 | 2.063 | 28.08 | 0.00 | 9.4 | 90.6 | 0.0 | -4.08 | 0.25 | 0.57 | 3.84 | 3.1 | 0.007 | 1.04 | 0.0 | 0.06 | 15.05 | 0.00 | 2.596 | 10.09 | 5.70 | 11.0 | 89.0 | 0.0 | -4.03 | 1.95 | 0.52 | 0.88 | 3.82 | 4816 | 660 | 18 | 0 | 10 | 0 | 0 | logfile |
✔ | 8ZLo | 60231 | 2025-04-27 | 2024-05-20 | 3.1 | 2.98 | 2.80 | 3.3 | 0.015 | 1.52 | 0.0 | 0.08 | 17.15 | 0.01 | 2.063 | 28.08 | 0.00 | 9.4 | 90.6 | 0.0 | -4.08 | 0.25 | 0.57 | 3.84 | 3.1 | 0.007 | 1.04 | 0.0 | 0.06 | 15.05 | 0.00 | 2.596 | 10.09 | 5.70 | 11.0 | 89.0 | 0.0 | -4.03 | 1.95 | 0.52 | 0.88 | 3.82 | 4816 | 660 | 18 | 0 | 10 | 0 | 0 | logfile |