Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YJR	39347	2025-01-16	2024-03-02	3.51	3.58	3.59	3.7	0.005	0.94	0.0	0.05	20.53	0.01	2.330	4.85	0.00	4.1	95.9	0.0	-3.40	0.81	0.79	2.36	3.7	0.005	0.94	0.0	0.04	21.30	0.00	2.381	13.11	1.66	4.7	95.3	0.0	-1.01	0.50	0.83	0.82	2.53	9962	1113	8	65	0	0	0	logfile
✔	8YJP	39345	2025-03-06	2024-03-02	3.09	2.27	3.11	2.1	0.009	1.46	0.0	0.08	22.11	0.01	2.240	15.97	0.00	4.7	95.3	0.0	1.56	0.72	0.69	2.05	2.1	0.003	0.64	0.0	0.04	17.72	0.00	2.468	10.25	2.45	3.4	96.6	0.0	2.45	1.02	0.76	0.76	1.66	4946	596	4	0	13	0	0	logfile
✔	8YJP	39345	2025-04-27	2024-03-02	3.09	2.27	3.11	2.1	0.011	1.47	0.0	0.08	22.11	0.01	2.240	15.97	0.00	4.7	95.3	0.0	1.56	0.72	0.69	2.05	2.1	0.003	0.66	0.0	0.04	17.60	0.00	2.459	10.25	1.63	3.0	97.0	0.0	2.54	1.02	0.75	0.75	1.61	4946	596	4	0	13	0	0	logfile
✔	8YJP	39345	2025-02-11	2024-03-02	3.09	2.27	3.09	2.1	0.009	1.46	0.0	0.08	22.11	0.01	2.240	15.97	0.00	4.7	95.3	0.0	1.56	0.72	0.69	2.05	2.1	0.003	0.63	0.0	0.04	17.66	0.00	2.454	9.84	1.84	3.2	96.8	0.0	2.58	1.01	0.75	0.75	1.97	4946	596	4	0	13	0	0	logfile
✔	8YJS	39348	2025-01-16	2024-03-02	3.55	3.39	3.54	3.5	0.006	1.03	0.0	0.06	19.68	0.01	2.347	5.87	0.00	5.3	94.7	0.0	-3.62	0.78	0.79	2.45	3.6	0.004	0.63	0.0	0.04	20.53	0.00	2.469	11.85	1.14	3.8	96.2	0.0	-1.00	0.49	0.79	0.81	2.33	9880	1111	8	62	0	0	0	logfile
✔	8YJS	39348	2025-02-14	2024-03-02	3.55	3.39	3.54	3.5	0.006	1.03	0.0	0.06	19.68	0.01	2.347	5.87	0.00	5.3	94.7	0.0	-3.62	0.78	0.79	2.45	3.6	0.004	0.63	0.0	0.04	20.53	0.00	2.469	11.85	1.14	3.8	96.2	0.0	-1.00	0.49	0.79	0.81	2.33	9880	1111	8	62	0	0	0	logfile
✔	8YJS	39348	2024-12-29	2024-03-02	3.55	3.39	3.54	3.5	0.006	1.03	0.0	0.06	19.68	0.01	2.347	5.87	0.00	5.3	94.7	0.0	-3.62	0.78	0.79	2.45	3.6	0.003	0.63	0.0	0.04	20.58	0.00	2.504	11.48	1.76	3.8	96.2	0.0	-1.16	0.50	0.79	0.81	2.30	9880	1111	8	62	0	0	0	logfile
✔	8YJQ	39346	2025-01-16	2024-03-02	3.51	3.25	3.48	3.6	0.005	0.97	0.0	0.05	19.57	0.01	2.366	5.25	0.00	4.4	95.6	0.0	-3.80	0.79	0.79	2.19	3.6	0.003	0.60	0.0	0.04	20.49	0.00	2.472	12.01	1.96	2.9	97.1	0.0	-1.06	0.99	0.80	0.81	2.59	9856	1115	8	59	0	0	0	logfile
✔	8YJL	39344	2024-12-29	2024-03-02	3.51	3.46	3.50	3.5	0.005	1.00	0.0	0.06	19.38	0.01	2.339	5.77	0.00	3.7	96.3	0.0	-2.81	0.77	0.79	2.64	3.5	0.004	0.66	0.0	0.04	20.73	0.00	2.376	13.37	2.58	3.6	96.4	0.0	-1.00	0.94	0.77	0.81	2.67	9853	1115	8	59	0	0	0	logfile
✔	8YJL	39344	2025-02-14	2024-03-02	3.51	3.46	3.50	3.5	0.005	1.00	0.0	0.06	19.38	0.01	2.339	5.77	0.00	3.7	96.3	0.0	-2.81	0.77	0.79	2.64	3.5	0.004	0.66	0.0	0.04	20.62	0.00	2.374	13.42	2.79	3.5	96.5	0.0	-1.19	0.94	0.77	0.81	2.64	9853	1115	8	59	0	0	0	logfile
✔	8YJL	39344	2025-04-30	2024-03-02	3.51	3.46	3.50	3.5	0.005	1.00	0.0	0.06	19.38	0.01	2.339	5.77	0.00	3.7	96.3	0.0	-2.81	0.77	0.79	2.64	3.5	0.004	0.66	0.0	0.04	20.75	0.00	2.369	13.26	1.96	3.1	96.9	0.0	-1.11	0.95	0.77	0.80	2.67	9853	1115	8	59	0	0	0	logfile
✔	8YJL	39344	2025-01-16	2024-03-02	3.51	3.46	3.50	3.5	0.005	1.00	0.0	0.06	19.38	0.01	2.339	5.77	0.00	3.7	96.3	0.0	-2.81	0.77	0.79	2.64	3.5	0.004	0.66	0.0	0.04	20.62	0.00	2.374	13.42	2.79	3.5	96.5	0.0	-1.19	0.94	0.77	0.81	2.64	9853	1115	8	59	0	0	0	logfile
✔	9AVG	43901	2025-01-21	2024-03-02	3.6	2.11	—	1.8	0.005	0.69	0.0	0.04	12.94	0.01	2.112	8.93	0.00	3.2	96.8	0.0	-0.83	0.76	0.75	2.80	1.8	0.004	0.58	0.0	0.04	14.78	0.00	2.338	7.07	1.94	3.4	96.6	0.0	-0.18	0.90	0.76	0.75	2.34	17498	2210	13	0	25	0	0	logfile
✘	9AVG	43901	2024-08-06	2024-03-02	3.6	2.11	—	1.8	0.005	0.69	0.0	0.04	12.94	0.01	2.112	8.93	0.00	3.2	96.8	0.0	-0.83	0.76	0.75	2.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17498	2210	13	0	25	0	0	logfile
✘	9AVG	43901	2024-07-22	2024-03-02	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17498	2210	13	0	25	0	0	logfile
✘	9AVG	43901	2024-09-27	2024-03-02	3.6	2.11	—	1.8	0.005	0.69	0.0	0.04	12.94	0.01	2.112	8.93	0.00	3.2	96.8	0.0	-0.83	0.76	0.75	2.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17498	2210	13	0	25	0	0	logfile
✘	9AVG	43901	2024-10-14	2024-03-02	3.6	2.11	—	1.8	0.005	0.69	0.0	0.04	12.94	0.01	2.112	8.93	0.00	3.2	96.8	0.0	-0.83	0.76	0.75	2.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17498	2210	13	0	25	0	0	logfile
✘	9AVG	43901	2024-11-18	2024-03-02	3.6	2.11	—	1.8	0.005	0.69	0.0	0.04	12.94	0.01	2.112	8.93	0.00	3.2	96.8	0.0	-0.83	0.76	0.75	2.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17498	2210	13	0	25	0	0	logfile
✔	8YJH	39342	2025-01-16	2024-03-01	3.68	3.64	3.65	3.7	0.005	1.04	0.0	0.06	18.97	0.01	2.256	4.67	0.00	5.2	94.8	0.0	-3.68	0.80	0.78	2.04	3.7	0.003	0.64	0.0	0.04	19.75	0.00	2.493	11.71	1.86	3.4	96.6	0.0	-1.10	0.47	0.81	0.81	1.76	9735	1115	8	53	0	0	0	logfile
✔	8YJH	39342	2025-04-30	2024-03-01	3.68	3.64	3.66	3.7	0.005	1.04	0.0	0.06	18.97	0.01	2.256	4.67	0.00	5.2	94.8	0.0	-3.68	0.80	0.78	2.04	3.7	0.004	0.66	0.0	0.04	19.72	0.00	2.489	12.70	2.27	3.7	96.3	0.0	-1.16	0.95	0.82	0.81	1.63	9735	1115	8	53	0	0	0	logfile

• ← previous
• Page 215 of 4927
• next →