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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8V6L | 42995 | 2024-07-23 | 2023-12-01 | 3.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22387 | 2612 | 8 | 0 | 27 | 0 | 0 | logfile |
✔ | 8V62 | 42987 | 2024-12-31 | 2023-12-01 | 3.4 | 2.29 | 3.50 | 2.1 | 0.002 | 0.56 | 0.0 | 0.04 | 10.43 | 0.01 | 2.027 | 2.06 | 0.00 | 0.9 | 99.1 | 0.0 | 0.61 | 0.75 | 0.77 | 3.19 | 2.1 | 0.004 | 0.60 | 0.0 | 0.04 | 14.45 | 0.00 | 2.511 | 4.93 | 2.13 | 2.1 | 97.9 | 0.0 | 0.61 | 0.46 | 0.76 | 0.78 | 2.85 | 15234 | 1980 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 8V6M | 42996 | 2024-07-28 | 2023-12-01 | 3.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 42639 | 2560 | 8 | 0 | 19 | 0 | 21092 | logfile |
✔ | 8V6M | 42996 | 2024-12-26 | 2023-12-01 | 3.63 | 3.95 | 3.74 | 4.0 | 0.006 | 1.07 | 0.0 | 0.07 | 14.48 | 0.01 | 2.063 | 2.32 | 0.00 | 10.7 | 88.2 | 1.1 | -4.72 | 0.61 | 0.75 | 2.26 | 4.0 | 0.003 | 0.69 | 0.0 | 0.06 | 16.42 | 0.01 | 2.290 | 13.60 | 2.20 | 11.1 | 88.7 | 0.2 | -0.51 | 1.38 | 0.60 | 0.78 | 2.08 | 42639 | 2560 | 8 | 0 | 19 | 0 | 21092 | logfile |
✔ | 8V6N | 42997 | 2024-08-08 | 2023-12-01 | 2.59 | 2.81 | 2.72 | 2.9 | 0.008 | 1.22 | 0.0 | 0.05 | 16.90 | 0.01 | 2.274 | 3.79 | 0.00 | 5.6 | 94.4 | 0.0 | -6.02 | 0.59 | 0.78 | 3.84 | 2.9 | 0.003 | 0.64 | 0.0 | 0.04 | 17.45 | 0.00 | 2.306 | 5.29 | 2.03 | 5.4 | 94.6 | 0.0 | 0.66 | 1.13 | 0.65 | 0.86 | 3.48 | 22185 | 2544 | 12 | 0 | 33 | 184 | 0 | logfile |
✔ | 8V6N | 42997 | 2024-09-29 | 2023-12-01 | 2.59 | 2.81 | 2.72 | 2.9 | 0.008 | 1.22 | 0.0 | 0.05 | 16.90 | 0.01 | 2.274 | 3.79 | 0.00 | 5.6 | 94.4 | 0.0 | -6.02 | 0.59 | 0.78 | 3.84 | 2.9 | 0.003 | 0.64 | 0.0 | 0.04 | 17.45 | 0.00 | 2.306 | 5.29 | 2.03 | 5.4 | 94.6 | 0.0 | 0.66 | 1.13 | 0.65 | 0.86 | 3.48 | 22185 | 2544 | 12 | 0 | 33 | 184 | 0 | logfile |
✔ | 8V6N | 42997 | 2025-01-24 | 2023-12-01 | 2.59 | 2.81 | 2.72 | 2.9 | 0.008 | 1.22 | 0.0 | 0.05 | 16.90 | 0.01 | 2.274 | 3.79 | 0.00 | 5.6 | 94.4 | 0.0 | -6.02 | 0.59 | 0.78 | 3.84 | 2.9 | 0.004 | 0.69 | 0.0 | 0.04 | 17.61 | 0.00 | 2.343 | 5.73 | 2.21 | 5.9 | 94.1 | 0.0 | 0.46 | 1.12 | 0.66 | 0.87 | 3.53 | 22185 | 2544 | 12 | 0 | 33 | 184 | 0 | logfile |
✔ | 8V6N | 42997 | 2024-06-30 | 2023-12-01 | 2.59 | 2.81 | 2.72 | 2.9 | 0.008 | 1.22 | 0.0 | 0.05 | 16.90 | 0.01 | 2.274 | 3.79 | 0.00 | 5.6 | 94.4 | 0.0 | -6.02 | 0.59 | 0.78 | 3.84 | 2.9 | 0.003 | 0.62 | 0.0 | 0.04 | 17.65 | 0.00 | 1.945 | 7.90 | 2.39 | 4.8 | 95.2 | 0.0 | 0.22 | 1.13 | 0.66 | 0.86 | 3.49 | 22185 | 2544 | 12 | 0 | 33 | 184 | 0 | logfile |
✘ | 8V6N | 42997 | 2024-07-23 | 2023-12-01 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22185 | 2544 | 12 | 0 | 33 | 184 | 0 | logfile |
✔ | 8X9S | 38183 | 2025-03-11 | 2023-12-01 | 3.49 | 4.10 | 3.36 | 3.8 | 0.003 | 0.57 | 0.0 | 0.04 | 18.16 | 0.00 | 2.260 | 7.81 | 0.57 | 6.6 | 93.4 | 0.0 | -0.16 | 0.75 | 0.86 | 1.18 | 3.8 | 0.003 | 0.57 | 0.0 | 0.04 | 18.04 | 0.00 | 2.559 | 6.23 | 3.56 | 6.4 | 93.6 | 0.0 | 0.02 | 0.26 | 0.75 | 0.86 | 0.97 | 6774 | 892 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 8R9V | 19013 | 2025-01-20 | 2023-11-30 | 4.4 | 2.81 | 4.31 | 3.9 | 0.013 | 1.69 | 1.0 | 0.10 | 14.89 | 0.01 | 1.324 | 17.12 | 0.25 | 4.3 | 95.3 | 0.3 | -2.00 | 0.64 | 0.65 | — | 1.8 | 0.003 | 0.81 | 0.0 | 0.05 | 14.11 | 0.00 | 1.852 | 12.71 | 0.00 | 3.2 | 96.7 | 0.1 | -0.01 | 1.24 | 0.68 | 0.72 | — | 14851 | 1857 | 8 | 0 | 10 | 0 | 0 | logfile |
✔ | 8R9V | 19013 | 2024-12-31 | 2023-11-30 | 4.4 | 2.81 | 4.31 | 3.9 | 0.013 | 1.69 | 1.0 | 0.10 | 14.89 | 0.01 | 1.324 | 17.12 | 0.25 | 4.3 | 95.3 | 0.3 | -2.00 | 0.64 | 0.65 | — | 1.8 | 0.003 | 0.79 | 0.0 | 0.04 | 14.16 | 0.00 | 1.865 | 12.30 | 0.06 | 3.8 | 96.2 | 0.0 | 0.11 | 1.94 | 0.68 | 0.72 | — | 14851 | 1857 | 8 | 0 | 10 | 0 | 0 | logfile |
✔ | 8X9P | 38178 | 2024-11-14 | 2023-11-30 | 3.54 | 3.88 | 3.62 | 3.8 | 0.004 | 0.67 | 0.0 | 0.04 | 16.06 | 0.00 | 2.145 | 17.35 | 0.12 | 3.1 | 96.9 | 0.0 | 0.51 | 0.80 | 0.77 | 1.64 | 3.7 | 0.004 | 0.78 | 0.0 | 0.05 | 17.27 | 0.00 | 2.512 | 14.64 | 2.87 | 2.8 | 97.2 | 0.0 | 0.04 | 1.10 | 0.80 | 0.79 | 1.34 | 7669 | 973 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8X9P | 38178 | 2025-02-12 | 2023-11-30 | 3.54 | 3.88 | 3.62 | 3.8 | 0.004 | 0.67 | 0.0 | 0.04 | 16.06 | 0.00 | 2.145 | 17.35 | 0.12 | 3.1 | 96.9 | 0.0 | 0.51 | 0.80 | 0.77 | 1.64 | 3.7 | 0.003 | 0.73 | 0.0 | 0.04 | 17.22 | 0.00 | 2.510 | 13.45 | 3.11 | 2.8 | 97.2 | 0.0 | 0.22 | 1.08 | 0.80 | 0.79 | 1.22 | 7669 | 973 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8X9P | 38178 | 2025-01-14 | 2023-11-30 | 3.54 | 3.88 | 3.62 | 3.8 | 0.004 | 0.67 | 0.0 | 0.04 | 16.06 | 0.00 | 2.145 | 17.35 | 0.12 | 3.1 | 96.9 | 0.0 | 0.51 | 0.80 | 0.77 | 1.64 | 3.7 | 0.003 | 0.73 | 0.0 | 0.04 | 17.22 | 0.00 | 2.510 | 13.45 | 3.11 | 2.8 | 97.2 | 0.0 | 0.22 | 1.08 | 0.80 | 0.79 | 1.22 | 7669 | 973 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8V5R | 42984 | 2024-11-18 | 2023-11-30 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15338 | 1743 | 6 | 43 | 1 | 0 | 0 | logfile |
✘ | 8V5R | 42984 | 2024-10-13 | 2023-11-30 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15338 | 1743 | 6 | 43 | 1 | 0 | 0 | logfile |
✘ | 8V5R | 42984 | 2024-09-27 | 2023-11-30 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15338 | 1743 | 6 | 43 | 1 | 0 | 0 | logfile |
✘ | 8V5R | 42984 | 2024-08-06 | 2023-11-30 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15338 | 1743 | 6 | 43 | 1 | 0 | 0 | logfile |
✘ | 8V5R | 42984 | 2025-01-20 | 2023-11-30 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15338 | 1743 | 6 | 43 | 1 | 0 | 0 | logfile |