Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XYJ	38775	2025-02-11	2024-01-19	3.33	3.55	3.09	3.5	0.012	1.02	0.0	0.05	15.95	0.01	2.196	17.47	8.03	10.1	89.5	0.4	-3.13	0.56	0.85	2.49	3.6	0.003	0.71	0.0	0.04	15.49	0.00	2.568	10.04	4.92	7.2	92.8	0.0	1.30	0.42	0.53	0.84	2.45	3582	460	2	0	0	0	0	logfile
✔	8XYC	38768	2025-05-12	2024-01-19	2.51	2.68	2.52	2.8	0.005	0.79	0.0	0.04	21.13	0.01	2.167	10.29	2.41	4.7	95.3	0.0	0.21	0.66	0.70	2.20	2.8	0.003	0.65	0.0	0.04	21.69	0.00	2.203	8.70	2.73	2.3	97.7	0.0	1.13	0.58	0.67	0.71	2.06	9244	749	4	153	0	0	0	logfile
✔	8XYC	38768	2024-12-28	2024-01-19	2.51	2.68	2.52	2.8	0.005	0.79	0.0	0.04	21.13	0.01	2.167	10.29	2.41	4.7	95.3	0.0	0.21	0.66	0.70	2.20	2.8	0.003	0.63	0.0	0.03	21.65	0.00	2.205	8.47	2.73	2.3	97.7	0.0	1.10	0.57	0.66	0.70	2.12	9244	749	4	153	0	0	0	logfile
✔	8XYC	38768	2024-11-15	2024-01-19	2.51	2.68	2.52	2.8	0.005	0.79	0.0	0.04	21.13	0.01	2.167	10.29	2.41	4.7	95.3	0.0	0.21	0.66	0.70	2.20	2.8	0.003	0.63	0.0	0.03	21.65	0.00	2.205	8.47	2.73	2.3	97.7	0.0	1.10	0.57	0.66	0.70	2.12	9244	749	4	153	0	0	0	logfile
✔	8XYC	38768	2025-04-30	2024-01-19	2.51	2.68	2.52	2.8	0.005	0.79	0.0	0.04	21.13	0.01	2.167	10.29	2.41	4.7	95.3	0.0	0.21	0.66	0.70	2.20	2.8	0.004	0.69	0.0	0.04	21.64	0.00	2.196	8.82	2.57	3.1	96.9	0.0	1.00	0.59	0.67	0.72	2.08	9244	749	4	153	0	0	0	logfile
✔	8XYC	38768	2025-03-13	2024-01-19	2.51	2.68	2.52	2.8	0.005	0.79	0.0	0.04	21.13	0.01	2.167	10.29	2.41	4.7	95.3	0.0	0.21	0.66	0.70	2.20	2.8	0.004	0.69	0.0	0.04	21.64	0.00	2.196	8.82	2.57	3.1	96.9	0.0	1.00	0.59	0.67	0.72	2.08	9244	749	4	153	0	0	0	logfile
✔	8XYC	38768	2025-02-13	2024-01-19	2.51	2.68	2.52	2.8	0.005	0.79	0.0	0.04	21.13	0.01	2.167	10.29	2.41	4.7	95.3	0.0	0.21	0.66	0.70	2.20	2.8	0.003	0.65	0.0	0.04	21.69	0.00	2.203	8.70	2.73	2.3	97.7	0.0	1.13	0.58	0.67	0.71	2.06	9244	749	4	153	0	0	0	logfile
✔	8XYC	38768	2025-01-16	2024-01-19	2.51	2.68	2.52	2.8	0.005	0.79	0.0	0.04	21.13	0.01	2.167	10.29	2.41	4.7	95.3	0.0	0.21	0.66	0.70	2.20	2.8	0.003	0.65	0.0	0.04	21.69	0.00	2.203	8.70	2.73	2.3	97.7	0.0	1.13	0.58	0.67	0.71	2.06	9244	749	4	153	0	0	0	logfile
✔	8XYH	38773	2025-05-25	2024-01-19	2.5	3.49	2.61	3.1	0.005	0.83	3.0	0.07	12.95	0.01	2.159	5.64	0.14	6.6	93.2	0.2	-1.03	0.87	0.87	4.04	3.1	0.003	0.66	0.0	0.05	14.49	0.00	2.445	3.72	1.50	5.9	94.0	0.1	-0.62	0.60	0.87	0.87	3.47	25878	3219	9	0	54	0	0	logfile
✔	8XXZ	38766	2025-05-11	2024-01-19	3.3	3.48	3.35	3.4	0.005	0.51	0.0	0.04	14.77	0.00	2.183	3.73	0.11	3.7	96.3	0.0	0.17	0.68	0.79	2.50	3.4	0.003	0.66	0.0	0.04	16.28	0.00	2.478	6.50	2.88	2.3	97.7	0.0	0.65	1.70	0.72	0.83	1.99	8331	1074	5	0	0	0	0	logfile
✔	8XXZ	38766	2025-03-12	2024-01-19	3.3	3.48	3.35	3.4	0.005	0.51	0.0	0.04	14.77	0.00	2.183	3.73	0.11	3.7	96.3	0.0	0.17	0.68	0.79	2.50	3.4	0.003	0.62	0.0	0.04	16.19	0.00	2.475	6.19	3.10	2.5	97.5	0.0	0.75	1.70	0.72	0.83	2.05	8331	1074	5	0	0	0	0	logfile
✔	8XXX	38764	2025-05-12	2024-01-19	3.17	3.64	3.37	3.7	0.003	0.57	0.0	0.04	15.15	0.00	2.204	8.80	0.52	3.1	96.9	0.0	0.37	0.62	0.76	1.50	3.6	0.004	0.61	0.0	0.04	15.88	0.00	2.371	7.19	2.92	3.7	96.3	0.0	0.72	1.55	0.63	0.78	1.78	9083	1196	6	0	0	0	0	logfile
✔	8XXZ	38766	2025-04-29	2024-01-19	3.3	3.48	3.35	3.4	0.005	0.51	0.0	0.04	14.77	0.00	2.183	3.73	0.11	3.7	96.3	0.0	0.17	0.68	0.79	2.50	3.4	0.003	0.63	0.0	0.04	16.40	0.00	2.483	6.13	3.21	2.9	97.1	0.0	0.69	1.70	0.72	0.83	2.22	8331	1074	5	0	0	0	0	logfile
✔	8XXX	38764	2025-03-13	2024-01-19	3.17	3.64	3.37	3.7	0.003	0.57	0.0	0.04	15.15	0.00	2.204	8.80	0.52	3.1	96.9	0.0	0.37	0.62	0.76	1.50	3.6	0.003	0.59	0.0	0.04	15.80	0.00	2.594	6.74	3.02	3.0	97.0	0.0	0.85	1.55	0.63	0.78	1.64	9083	1196	6	0	0	0	0	logfile
✔	8XXX	38764	2025-02-13	2024-01-19	3.17	3.64	3.44	3.7	0.003	0.57	0.0	0.04	15.15	0.00	2.204	8.80	0.52	3.1	96.9	0.0	0.37	0.62	0.76	1.50	3.6	0.003	0.59	0.0	0.04	15.84	0.00	2.374	6.80	2.71	2.7	97.3	0.0	0.84	1.55	0.63	0.78	1.55	9083	1196	6	0	0	0	0	logfile
✔	8XXX	38764	2025-04-30	2024-01-19	3.17	3.64	3.37	3.7	0.003	0.57	0.0	0.04	15.15	0.00	2.204	8.80	0.52	3.1	96.9	0.0	0.37	0.62	0.76	1.50	3.6	0.003	0.61	0.0	0.04	15.94	0.00	2.512	6.63	2.40	3.1	96.9	0.0	0.63	1.55	0.63	0.78	1.89	9083	1196	6	0	0	0	0	logfile
✔	8XXW	38763	2025-02-12	2024-01-19	3.03	2.29	3.01	2.0	0.003	0.57	0.0	0.04	16.10	0.01	2.212	6.09	0.12	2.0	98.0	0.0	1.00	0.80	0.81	2.71	2.0	0.003	0.56	0.0	0.04	16.45	0.00	2.400	4.70	1.81	2.1	97.9	0.0	1.50	0.38	0.80	0.82	2.41	7723	950	6	0	4	0	0	logfile
✔	8XXW	38763	2024-11-14	2024-01-19	3.03	2.29	3.01	2.0	0.003	0.57	0.0	0.04	16.10	0.01	2.212	6.09	0.12	2.0	98.0	0.0	1.00	0.80	0.81	2.71	2.0	0.003	0.55	0.0	0.04	16.40	0.00	2.397	5.17	1.33	2.1	97.9	0.0	1.49	0.41	0.79	0.81	2.41	7723	950	6	0	4	0	0	logfile
✔	8XXW	38763	2025-03-12	2024-01-19	3.03	2.29	3.01	2.0	0.003	0.57	0.0	0.04	16.10	0.01	2.212	6.09	0.12	2.0	98.0	0.0	1.00	0.80	0.81	2.71	2.0	0.004	0.58	0.0	0.04	16.39	0.00	2.395	4.97	1.81	2.6	97.4	0.0	1.42	0.38	0.80	0.82	2.48	7723	950	6	0	4	0	0	logfile
✔	8XXW	38763	2025-04-28	2024-01-19	3.03	2.29	3.01	2.0	0.003	0.57	0.0	0.04	16.10	0.01	2.212	6.09	0.12	2.0	98.0	0.0	1.00	0.80	0.81	2.71	2.0	0.003	0.57	0.0	0.04	16.53	0.00	2.396	5.10	1.81	2.1	97.9	0.0	1.40	0.39	0.80	0.82	2.51	7723	950	6	0	4	0	0	logfile

• ← previous
• Page 395 of 5030
• next →