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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8UTo | 42544 | 2025-05-23 | 2023-10-31 | 3.2 | 2.44 | 3.17 | 3.3 | 0.005 | 0.81 | 0.0 | 0.05 | 18.60 | 0.01 | 1.940 | 3.67 | 0.59 | 3.8 | 95.9 | 0.3 | -0.12 | 0.64 | 0.84 | 3.00 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 17.19 | 0.00 | 1.913 | 5.23 | 2.22 | 3.4 | 96.4 | 0.2 | 0.70 | 0.94 | 0.65 | 0.86 | 2.69 | 23792 | 2982 | 16 | 2 | 11 | 0 | 0 | logfile |
✔ | 8WYX | 37940 | 2025-03-13 | 2023-10-31 | 3.5 | 3.89 | 3.48 | 3.4 | 0.005 | 0.57 | 0.0 | 0.04 | 13.61 | 0.00 | 2.029 | 10.00 | 0.20 | 3.2 | 96.8 | 0.0 | -0.06 | 0.75 | 0.62 | 0.72 | 3.5 | 0.004 | 0.74 | 1.0 | 0.05 | 16.45 | 0.00 | 2.045 | 13.64 | 3.44 | 4.8 | 95.2 | 0.0 | -0.31 | 1.55 | 0.79 | 0.68 | 1.17 | 8809 | 1070 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 8UTF | 42539 | 2025-01-16 | 2023-10-31 | 2.73 | 2.99 | 2.86 | 2.9 | 0.003 | 0.45 | 0.0 | 0.04 | 16.15 | 0.00 | 2.222 | 3.02 | 0.00 | 1.5 | 98.5 | 0.0 | 0.28 | 0.69 | 0.81 | 3.67 | 2.9 | 0.003 | 0.55 | 0.0 | 0.04 | 16.06 | 0.00 | 2.596 | 3.48 | 1.68 | 1.5 | 98.5 | 0.0 | 1.52 | 1.47 | 0.77 | 0.86 | 2.92 | 9827 | 1248 | 15 | 0 | 9 | 134 | 0 | logfile |
✔ | 8UTF | 42539 | 2025-02-14 | 2023-10-31 | 2.73 | 2.99 | 2.86 | 2.9 | 0.003 | 0.45 | 0.0 | 0.04 | 16.15 | 0.00 | 2.222 | 3.02 | 0.00 | 1.5 | 98.5 | 0.0 | 0.28 | 0.69 | 0.81 | 3.67 | 2.9 | 0.003 | 0.55 | 0.0 | 0.04 | 16.06 | 0.00 | 2.596 | 3.48 | 1.68 | 1.5 | 98.5 | 0.0 | 1.52 | 1.47 | 0.77 | 0.86 | 2.92 | 9827 | 1248 | 15 | 0 | 9 | 134 | 0 | logfile |
✔ | 8UTo | 42544 | 2025-06-20 | 2023-10-31 | 3.2 | 2.44 | 3.17 | 3.3 | 0.005 | 0.81 | 0.0 | 0.05 | 18.60 | 0.01 | 1.940 | 3.67 | 0.59 | 3.8 | 95.9 | 0.3 | -0.12 | 0.64 | 0.84 | 3.00 | 3.3 | 0.004 | 0.62 | 0.0 | 0.04 | 17.29 | 0.00 | 1.875 | 5.40 | 2.77 | 3.9 | 96.0 | 0.1 | 0.47 | 0.94 | 0.65 | 0.86 | 2.95 | 23792 | 2982 | 16 | 2 | 11 | 0 | 0 | logfile |
✔ | 8UTF | 42539 | 2025-04-30 | 2023-10-31 | 2.73 | 2.99 | 2.86 | 2.9 | 0.003 | 0.46 | 0.0 | 0.04 | 16.15 | 0.00 | 2.222 | 3.02 | 0.00 | 1.5 | 98.5 | 0.0 | 0.28 | 0.69 | 0.81 | 3.67 | 2.9 | 0.004 | 0.62 | 0.0 | 0.05 | 16.18 | 0.00 | 2.513 | 3.53 | 2.43 | 1.6 | 98.4 | 0.0 | 1.35 | 1.47 | 0.77 | 0.86 | 2.87 | 9827 | 1248 | 15 | 0 | 9 | 134 | 0 | logfile |
✔ | 8WYX | 37940 | 2025-02-13 | 2023-10-31 | 3.5 | 3.89 | 3.49 | 3.4 | 0.005 | 0.57 | 0.0 | 0.04 | 13.61 | 0.00 | 2.029 | 10.00 | 0.20 | 3.2 | 96.8 | 0.0 | -0.06 | 0.75 | 0.62 | 0.72 | 3.6 | 0.004 | 0.77 | 1.0 | 0.04 | 16.57 | 0.00 | 2.026 | 14.78 | 4.15 | 4.6 | 95.4 | 0.0 | -0.55 | 1.56 | 0.79 | 0.68 | 1.11 | 8809 | 1070 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 8UT8 | 42533 | 2025-08-23 | 2023-10-30 | 3.2 | 3.53 | 3.39 | 3.5 | 0.007 | 1.16 | 0.0 | 0.06 | 13.81 | 0.01 | 2.087 | 3.20 | 0.00 | 3.0 | 97.0 | 0.0 | 0.10 | 0.66 | 0.76 | 2.65 | 3.5 | 0.006 | 0.82 | 0.0 | 0.05 | 15.72 | 0.00 | 2.492 | 12.26 | 2.93 | 6.0 | 94.0 | 0.0 | -0.93 | 0.58 | 0.68 | 0.79 | 2.54 | 12707 | 1450 | 17 | 0 | 249 | 0 | 0 | logfile |
✔ | 8UT8 | 42533 | 2025-06-11 | 2023-10-30 | 3.2 | 3.53 | 3.39 | 3.5 | 0.007 | 1.16 | 0.0 | 0.06 | 13.81 | 0.01 | 2.087 | 3.28 | 0.00 | 3.0 | 97.0 | 0.0 | 0.10 | 0.66 | 0.76 | 2.65 | 3.6 | 0.003 | 0.67 | 0.0 | 0.04 | 15.39 | 0.00 | 2.558 | 8.40 | 2.12 | 4.2 | 95.8 | 0.0 | -0.19 | 0.56 | 0.67 | 0.77 | 2.40 | 12707 | 1450 | 17 | 0 | 249 | 0 | 0 | logfile |
✔ | 8UT8 | 42533 | 2025-05-15 | 2023-10-30 | 3.2 | 3.53 | 3.39 | 3.5 | 0.007 | 1.16 | 0.0 | 0.06 | 13.81 | 0.01 | 2.087 | 3.28 | 0.00 | 3.0 | 97.0 | 0.0 | 0.10 | 0.66 | 0.76 | 2.65 | 3.6 | 0.004 | 0.71 | 0.0 | 0.04 | 15.65 | 0.00 | 2.483 | 9.81 | 2.04 | 4.1 | 95.9 | 0.0 | -0.68 | 0.59 | 0.68 | 0.78 | 2.50 | 12707 | 1450 | 17 | 0 | 249 | 0 | 0 | logfile |
✔ | 8UT8 | 42533 | 2025-01-18 | 2023-10-30 | 3.2 | 3.53 | 3.40 | 3.5 | 0.007 | 1.15 | 0.0 | 0.06 | 13.81 | 0.01 | 2.087 | 3.28 | 0.00 | 3.0 | 97.0 | 0.0 | 0.10 | 0.66 | 0.76 | 2.65 | 3.6 | 0.003 | 0.68 | 0.0 | 0.04 | 15.43 | 0.00 | 2.457 | 9.52 | 1.87 | 4.6 | 95.4 | 0.0 | -0.46 | 0.57 | 0.68 | 0.78 | 2.62 | 12707 | 1450 | 17 | 0 | 249 | 0 | 0 | logfile |
✔ | 8UT6 | 42531 | 2024-12-30 | 2023-10-30 | 2.8 | 3.01 | 2.85 | 3.0 | 0.006 | 0.95 | 0.0 | 0.05 | 13.95 | 0.01 | 2.085 | 2.86 | 0.00 | 2.0 | 98.0 | 0.0 | 0.42 | 0.60 | 0.79 | 4.37 | 3.0 | 0.005 | 0.69 | 0.0 | 0.05 | 15.14 | 0.00 | 2.407 | 6.94 | 1.57 | 4.1 | 95.9 | 0.0 | -0.37 | 1.10 | 0.61 | 0.80 | 4.45 | 13046 | 1460 | 11 | 0 | 257 | 0 | 0 | logfile |
✔ | 8UT6 | 42531 | 2024-11-17 | 2023-10-30 | 2.8 | 3.01 | 2.85 | 3.0 | 0.006 | 0.95 | 0.0 | 0.05 | 13.95 | 0.01 | 2.085 | 2.86 | 0.00 | 2.0 | 98.0 | 0.0 | 0.42 | 0.60 | 0.79 | 4.37 | 3.0 | 0.005 | 0.69 | 0.0 | 0.05 | 15.14 | 0.00 | 2.407 | 6.94 | 1.57 | 4.1 | 95.9 | 0.0 | -0.37 | 1.10 | 0.61 | 0.80 | 4.45 | 13046 | 1460 | 11 | 0 | 257 | 0 | 0 | logfile |
✔ | 8UT6 | 42531 | 2025-08-23 | 2023-10-30 | 2.8 | 3.01 | 2.85 | 3.0 | 0.006 | 0.96 | 0.0 | 0.05 | 13.95 | 0.01 | 2.085 | 2.86 | 0.00 | 2.0 | 98.0 | 0.0 | 0.42 | 0.60 | 0.79 | 4.37 | 3.0 | 0.003 | 0.63 | 0.0 | 0.04 | 15.06 | 0.00 | 2.459 | 6.41 | 1.49 | 4.1 | 95.9 | 0.0 | -0.24 | 1.10 | 0.63 | 0.81 | 4.29 | 13046 | 1460 | 11 | 0 | 257 | 0 | 0 | logfile |
✔ | 8UT6 | 42531 | 2025-07-31 | 2023-10-30 | 2.8 | 3.01 | 2.85 | 3.0 | 0.006 | 0.96 | 0.0 | 0.05 | 13.95 | 0.01 | 2.085 | 2.86 | 0.00 | 2.0 | 98.0 | 0.0 | 0.42 | 0.60 | 0.79 | 4.37 | 3.0 | 0.007 | 0.77 | 0.0 | 0.05 | 15.24 | 0.01 | 2.391 | 7.74 | 2.04 | 4.4 | 95.6 | 0.0 | -0.67 | 1.10 | 0.62 | 0.81 | 4.41 | 13046 | 1460 | 11 | 0 | 257 | 0 | 0 | logfile |
✔ | 8UT6 | 42531 | 2025-06-11 | 2023-10-30 | 2.8 | 3.01 | 2.85 | 3.0 | 0.006 | 0.96 | 0.0 | 0.05 | 13.95 | 0.01 | 2.085 | 2.86 | 0.00 | 2.0 | 98.0 | 0.0 | 0.42 | 0.60 | 0.79 | 4.37 | 3.0 | 0.007 | 0.77 | 0.0 | 0.05 | 15.24 | 0.01 | 2.391 | 7.74 | 2.04 | 4.4 | 95.6 | 0.0 | -0.67 | 1.10 | 0.62 | 0.81 | 4.41 | 13046 | 1460 | 11 | 0 | 257 | 0 | 0 | logfile |
✔ | 8UT6 | 42531 | 2025-05-15 | 2023-10-30 | 2.8 | 3.01 | 2.85 | 3.0 | 0.006 | 0.96 | 0.0 | 0.05 | 13.95 | 0.01 | 2.085 | 2.86 | 0.00 | 2.0 | 98.0 | 0.0 | 0.42 | 0.60 | 0.79 | 4.37 | 3.0 | 0.004 | 0.67 | 0.0 | 0.04 | 15.13 | 0.00 | 2.450 | 7.06 | 1.57 | 4.2 | 95.8 | 0.0 | -0.38 | 1.10 | 0.62 | 0.81 | 4.41 | 13046 | 1460 | 11 | 0 | 257 | 0 | 0 | logfile |
✔ | 8WY0 | 37914 | 2025-01-13 | 2023-10-30 | 3.8 | 4.17 | 3.79 | 4.1 | 0.003 | 0.71 | 0.0 | 0.04 | 17.42 | 0.00 | 2.142 | 14.51 | 1.16 | 7.9 | 92.1 | 0.0 | -1.58 | 0.50 | 0.67 | 1.59 | 4.1 | 0.003 | 0.85 | 0.0 | 0.04 | 17.85 | 0.00 | 2.524 | 10.03 | 5.60 | 6.7 | 93.3 | 0.0 | -0.69 | 0.67 | 0.61 | 0.76 | 1.26 | 4656 | 587 | 9 | 0 | 1 | 0 | 0 | logfile |
✔ | 8UT8 | 42533 | 2024-12-30 | 2023-10-30 | 3.2 | 3.53 | 3.40 | 3.5 | 0.007 | 1.15 | 0.0 | 0.06 | 13.81 | 0.01 | 2.087 | 3.28 | 0.00 | 3.0 | 97.0 | 0.0 | 0.10 | 0.66 | 0.76 | 2.65 | 3.6 | 0.004 | 0.71 | 0.0 | 0.04 | 15.60 | 0.00 | 2.438 | 10.10 | 2.77 | 4.6 | 95.3 | 0.1 | -0.61 | 0.59 | 0.68 | 0.78 | 2.56 | 12707 | 1450 | 17 | 0 | 249 | 0 | 0 | logfile |
✔ | 8UT8 | 42533 | 2024-11-17 | 2023-10-30 | 3.2 | 3.53 | 3.40 | 3.5 | 0.007 | 1.15 | 0.0 | 0.06 | 13.81 | 0.01 | 2.087 | 3.28 | 0.00 | 3.0 | 97.0 | 0.0 | 0.10 | 0.66 | 0.76 | 2.65 | 3.6 | 0.004 | 0.71 | 0.0 | 0.04 | 15.60 | 0.00 | 2.438 | 10.10 | 2.77 | 4.6 | 95.3 | 0.1 | -0.61 | 0.59 | 0.68 | 0.78 | 2.56 | 12707 | 1450 | 17 | 0 | 249 | 0 | 0 | logfile |