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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8WVV | 37873 | 2025-08-22 | 2023-10-24 | 3.35 | 2.72 | 3.58 | 3.5 | 0.007 | 1.27 | 13.0 | 0.08 | 17.09 | 0.01 | 1.693 | 25.67 | 1.28 | 7.7 | 92.3 | 0.0 | -2.78 | 0.74 | 0.74 | 0.66 | 3.5 | 0.005 | 0.79 | 0.0 | 0.05 | 17.60 | 0.00 | 2.554 | 16.76 | 3.19 | 7.7 | 92.3 | 0.0 | -1.84 | 1.04 | 0.76 | 0.79 | 1.34 | 5596 | 718 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8QXA | 18716 | 2024-12-27 | 2023-10-24 | 4.05 | 3.51 | 3.78 | 4.2 | 0.014 | 2.24 | 0.0 | 0.10 | 18.94 | 0.01 | 2.420 | 4.19 | 0.00 | 3.5 | 96.5 | 0.0 | -4.36 | 0.51 | 0.75 | — | 4.2 | 0.004 | 0.84 | 0.0 | 0.04 | 14.32 | 0.00 | 2.541 | 15.94 | 0.00 | 8.5 | 91.5 | 0.0 | -4.42 | 1.43 | 0.44 | 0.70 | — | 3696 | 540 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8QXA | 18716 | 2025-06-04 | 2023-10-24 | 4.05 | 3.51 | 3.75 | 4.2 | 0.014 | 2.24 | 0.0 | 0.10 | 18.94 | 0.01 | 2.420 | 4.19 | 0.00 | 3.5 | 96.5 | 0.0 | -4.36 | 0.51 | 0.75 | — | 4.2 | 0.004 | 0.78 | 0.0 | 0.04 | 14.51 | 0.00 | 2.619 | 15.80 | 0.00 | 7.0 | 93.0 | 0.0 | -4.30 | 1.41 | 0.48 | 0.75 | — | 3696 | 540 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8QXA | 18716 | 2024-11-14 | 2023-10-24 | 4.05 | 3.51 | 3.78 | 4.2 | 0.014 | 2.24 | 0.0 | 0.10 | 18.94 | 0.01 | 2.420 | 4.19 | 0.00 | 3.5 | 96.5 | 0.0 | -4.36 | 0.51 | 0.75 | — | 4.2 | 0.004 | 0.84 | 0.0 | 0.04 | 14.32 | 0.00 | 2.541 | 15.94 | 0.00 | 8.5 | 91.5 | 0.0 | -4.42 | 1.43 | 0.44 | 0.70 | — | 3696 | 540 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8QXA | 18716 | 2025-04-26 | 2023-10-24 | 4.05 | 3.51 | 3.75 | 4.2 | 0.014 | 2.24 | 0.0 | 0.10 | 18.94 | 0.01 | 2.420 | 4.19 | 0.00 | 3.5 | 96.5 | 0.0 | -4.36 | 0.51 | 0.75 | — | 4.2 | 0.004 | 0.78 | 0.0 | 0.04 | 14.51 | 0.00 | 2.619 | 15.80 | 0.00 | 7.0 | 93.0 | 0.0 | -4.30 | 1.41 | 0.48 | 0.75 | — | 3696 | 540 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8QXA | 18716 | 2025-03-05 | 2023-10-24 | 4.05 | 3.51 | 3.75 | 4.2 | 0.014 | 2.24 | 0.0 | 0.10 | 18.94 | 0.01 | 2.420 | 4.19 | 0.00 | 3.5 | 96.5 | 0.0 | -4.36 | 0.51 | 0.75 | — | 4.2 | 0.004 | 0.78 | 0.0 | 0.04 | 14.51 | 0.00 | 2.619 | 15.80 | 0.00 | 7.0 | 93.0 | 0.0 | -4.30 | 1.41 | 0.48 | 0.75 | — | 3696 | 540 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8QXA | 18716 | 2025-02-11 | 2023-10-24 | 4.05 | 3.51 | 3.78 | 4.2 | 0.014 | 2.24 | 0.0 | 0.10 | 18.94 | 0.01 | 2.420 | 4.19 | 0.00 | 3.5 | 96.5 | 0.0 | -4.36 | 0.51 | 0.75 | — | 4.2 | 0.005 | 0.84 | 0.0 | 0.04 | 14.48 | 0.00 | 2.551 | 18.46 | 0.00 | 10.1 | 89.9 | 0.0 | -4.38 | 1.41 | 0.48 | 0.76 | — | 3696 | 540 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8QXA | 18716 | 2024-02-13 | 2023-10-24 | 4.05 | 3.51 | 3.78 | 4.2 | 0.014 | 2.24 | 0.0 | 0.10 | 18.94 | 0.01 | 2.420 | 4.19 | 0.00 | 3.5 | 96.5 | 0.0 | -4.36 | 0.51 | 0.75 | — | 4.2 | 0.004 | 0.84 | 0.0 | 0.04 | 14.57 | 0.00 | 2.342 | 19.02 | 0.00 | 9.1 | 90.9 | 0.0 | -4.56 | 1.51 | 0.49 | 0.75 | — | 3696 | 540 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8QXA | 18716 | 2025-05-09 | 2023-10-24 | 4.05 | 3.51 | 3.75 | 4.2 | 0.014 | 2.24 | 0.0 | 0.10 | 18.94 | 0.01 | 2.420 | 4.19 | 0.00 | 3.5 | 96.5 | 0.0 | -4.36 | 0.51 | 0.75 | — | 4.2 | 0.005 | 0.84 | 0.0 | 0.04 | 14.48 | 0.00 | 2.551 | 18.46 | 0.00 | 10.1 | 89.9 | 0.0 | -4.38 | 1.41 | 0.48 | 0.76 | — | 3696 | 540 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8QXA | 18716 | 2025-01-13 | 2023-10-24 | 4.05 | 3.51 | 3.78 | 4.2 | 0.014 | 2.24 | 0.0 | 0.10 | 18.94 | 0.01 | 2.420 | 4.19 | 0.00 | 3.5 | 96.5 | 0.0 | -4.36 | 0.51 | 0.75 | — | 4.2 | 0.005 | 0.84 | 0.0 | 0.04 | 14.48 | 0.00 | 2.551 | 18.46 | 0.00 | 10.1 | 89.9 | 0.0 | -4.38 | 1.41 | 0.48 | 0.76 | — | 3696 | 540 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8QXA | 18716 | 2025-08-22 | 2023-10-24 | 4.05 | 3.51 | 3.75 | 4.2 | 0.014 | 2.24 | 0.0 | 0.10 | 18.94 | 0.01 | 2.420 | 4.19 | 0.00 | 3.5 | 96.5 | 0.0 | -4.36 | 0.51 | 0.75 | — | 4.2 | 0.004 | 0.80 | 0.0 | 0.04 | 14.29 | 0.00 | 2.560 | 16.78 | 0.00 | 7.2 | 92.8 | 0.0 | -4.36 | 1.42 | 0.44 | 0.70 | — | 3696 | 540 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8QXA | 18716 | 2025-07-23 | 2023-10-24 | 4.05 | 3.51 | 3.75 | 4.2 | 0.014 | 2.24 | 0.0 | 0.10 | 18.94 | 0.01 | 2.420 | 4.19 | 0.00 | 3.5 | 96.5 | 0.0 | -4.36 | 0.51 | 0.75 | — | 4.2 | 0.004 | 0.78 | 0.0 | 0.04 | 14.51 | 0.00 | 2.619 | 15.80 | 0.00 | 7.0 | 93.0 | 0.0 | -4.30 | 1.41 | 0.48 | 0.75 | — | 3696 | 540 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8WW2 | 37881 | 2025-07-25 | 2023-10-24 | 2.79 | 3.00 | 2.83 | 3.0 | 0.004 | 0.71 | 0.0 | 0.05 | 13.76 | 0.00 | 1.809 | 4.15 | 0.00 | 3.5 | 96.5 | 0.0 | 0.09 | 0.66 | 0.80 | 2.96 | 3.0 | 0.002 | 0.50 | 0.0 | 0.04 | 15.73 | 0.00 | 2.599 | 2.34 | 1.49 | 2.4 | 97.6 | 0.0 | 1.24 | 0.30 | 0.64 | 0.81 | 2.50 | 7792 | 1020 | 6 | 0 | 3 | 2 | 0 | logfile |
✔ | 8WW2 | 37881 | 2025-05-11 | 2023-10-24 | 2.79 | 3.00 | 2.83 | 3.0 | 0.004 | 0.71 | 0.0 | 0.05 | 13.76 | 0.00 | 1.809 | 4.15 | 0.00 | 3.5 | 96.5 | 0.0 | 0.09 | 0.66 | 0.80 | 2.96 | 3.0 | 0.002 | 0.52 | 0.0 | 0.04 | 15.76 | 0.00 | 2.597 | 2.34 | 0.87 | 2.2 | 97.8 | 0.0 | 1.45 | 0.31 | 0.64 | 0.81 | 2.39 | 7792 | 1020 | 6 | 0 | 3 | 2 | 0 | logfile |
✔ | 8WW2 | 37881 | 2025-06-06 | 2023-10-24 | 2.79 | 3.00 | 2.83 | 3.0 | 0.004 | 0.71 | 0.0 | 0.05 | 13.76 | 0.00 | 1.809 | 4.15 | 0.00 | 3.5 | 96.5 | 0.0 | 0.09 | 0.66 | 0.80 | 2.96 | 3.0 | 0.002 | 0.50 | 0.0 | 0.04 | 15.73 | 0.00 | 2.599 | 2.34 | 1.49 | 2.4 | 97.6 | 0.0 | 1.24 | 0.30 | 0.64 | 0.81 | 2.50 | 7792 | 1020 | 6 | 0 | 3 | 2 | 0 | logfile |
✔ | 8WW2 | 37881 | 2025-03-12 | 2023-10-24 | 2.79 | 3.00 | 2.83 | 3.0 | 0.004 | 0.71 | 0.0 | 0.05 | 13.76 | 0.00 | 1.809 | 4.15 | 0.00 | 3.5 | 96.5 | 0.0 | 0.09 | 0.66 | 0.80 | 2.96 | 3.0 | 0.002 | 0.50 | 0.0 | 0.04 | 15.73 | 0.00 | 2.599 | 2.34 | 1.49 | 2.4 | 97.6 | 0.0 | 1.24 | 0.30 | 0.64 | 0.81 | 2.50 | 7792 | 1020 | 6 | 0 | 3 | 2 | 0 | logfile |
✔ | 8WW2 | 37881 | 2025-04-28 | 2023-10-24 | 2.79 | 3.00 | 2.83 | 3.0 | 0.004 | 0.71 | 0.0 | 0.05 | 13.76 | 0.00 | 1.809 | 4.15 | 0.00 | 3.5 | 96.5 | 0.0 | 0.09 | 0.66 | 0.80 | 2.96 | 3.0 | 0.002 | 0.50 | 0.0 | 0.04 | 15.73 | 0.00 | 2.599 | 2.34 | 1.49 | 2.4 | 97.6 | 0.0 | 1.24 | 0.30 | 0.64 | 0.81 | 2.50 | 7792 | 1020 | 6 | 0 | 3 | 2 | 0 | logfile |
✔ | 8WW2 | 37881 | 2024-12-28 | 2023-10-24 | 2.79 | 3.00 | 2.84 | 3.1 | 0.004 | 0.71 | 0.0 | 0.05 | 13.76 | 0.00 | 1.809 | 4.15 | 0.00 | 3.5 | 96.5 | 0.0 | 0.09 | 0.66 | 0.80 | 2.96 | 3.1 | 0.002 | 0.52 | 0.0 | 0.04 | 15.70 | 0.00 | 2.596 | 2.40 | 1.11 | 2.5 | 97.5 | 0.0 | 1.48 | 0.34 | 0.64 | 0.81 | 2.39 | 7792 | 1020 | 6 | 0 | 3 | 2 | 0 | logfile |
✔ | 8WW2 | 37881 | 2024-11-14 | 2023-10-24 | 2.79 | 3.00 | 2.84 | 3.1 | 0.004 | 0.71 | 0.0 | 0.05 | 13.76 | 0.00 | 1.809 | 4.15 | 0.00 | 3.5 | 96.5 | 0.0 | 0.09 | 0.66 | 0.80 | 2.96 | 3.1 | 0.002 | 0.52 | 0.0 | 0.04 | 15.70 | 0.00 | 2.596 | 2.40 | 1.11 | 2.5 | 97.5 | 0.0 | 1.48 | 0.34 | 0.64 | 0.81 | 2.39 | 7792 | 1020 | 6 | 0 | 3 | 2 | 0 | logfile |
✔ | 8WW2 | 37881 | 2025-08-22 | 2023-10-24 | 2.79 | 3.00 | 2.83 | 3.0 | 0.004 | 0.71 | 0.0 | 0.05 | 13.76 | 0.00 | 1.809 | 4.09 | 0.00 | 3.5 | 96.5 | 0.0 | 0.09 | 0.66 | 0.80 | 2.96 | 3.0 | 0.002 | 0.52 | 0.0 | 0.04 | 15.79 | 0.00 | 2.597 | 2.40 | 0.87 | 2.5 | 97.5 | 0.0 | 1.31 | 0.31 | 0.64 | 0.81 | 2.53 | 7792 | 1020 | 6 | 0 | 3 | 2 | 0 | logfile |