Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9C7U	45294	2025-01-14	2024-06-11	3.65	4.10	3.63	4.0	0.003	0.61	0.0	0.04	16.99	0.00	2.138	11.43	0.29	9.2	90.8	0.0	-0.72	0.71	0.83	2.04	4.0	0.004	0.62	0.0	0.04	17.57	0.00	2.540	10.83	5.96	9.4	90.6	0.0	-0.65	0.31	0.69	0.83	2.00	6848	896	4	0	1	0	0	logfile
✔	9FNB	50587	2025-01-13	2024-06-10	2.64	2.64	2.37	2.6	0.008	1.34	0.0	0.16	15.19	0.01	2.042	3.52	0.79	6.8	93.2	0.0	-2.48	0.52	0.93	6.97	2.6	0.005	0.69	0.0	0.05	15.91	0.00	2.514	6.26	0.79	6.6	93.4	0.0	-2.37	0.87	0.50	0.92	6.33	4568	540	8	0	16	0	0	logfile
✔	9C6Q	45254	2025-01-16	2024-06-08	3.18	3.22	3.07	3.3	0.005	0.64	0.0	0.04	15.43	0.00	2.139	5.91	0.19	6.6	93.4	0.1	-0.07	0.59	0.70	0.92	3.3	0.002	0.53	0.0	0.04	17.11	0.00	2.519	2.82	1.14	6.6	93.4	0.0	0.40	0.66	0.66	0.80	2.09	9841	1190	2	12	0	0	0	logfile
✔	9C6J	45248	2025-01-15	2024-06-07	2.41	3.08	2.55	2.9	0.008	0.79	0.0	0.05	25.12	0.01	1.871	10.86	0.00	0.0	0.0	0.0	—	0.87	0.89	—	2.9	0.008	0.67	0.0	0.04	24.39	0.01	1.886	8.14	0.00	0.0	0.0	0.0	—	0.26	0.87	0.91	—	8345	0	2	387	21	0	0	logfile
✔	8ZTS	60471	2025-01-19	2024-06-07	3.6	2.78	3.52	2.8	0.003	0.61	0.0	0.04	16.79	0.00	2.225	7.43	0.61	2.3	97.7	0.0	1.19	0.63	0.80	2.19	2.8	0.002	0.55	0.0	0.04	17.67	0.00	2.399	5.77	4.39	2.2	97.8	0.0	1.33	0.90	0.63	0.80	1.85	13515	1740	10	0	5	0	0	logfile
✔	9FMS	50566	2025-01-22	2024-06-07	2.65	3.44	2.78	3.2	0.012	1.83	3.0	0.10	14.00	0.02	1.881	0.67	0.20	4.2	95.8	0.0	-1.29	0.75	0.71	4.44	3.2	0.003	0.61	0.0	0.04	15.79	0.00	2.230	2.75	0.61	2.6	97.4	0.0	1.01	2.18	0.75	0.76	3.67	17805	1102	4	0	1	0	8842	logfile
✔	8ZTR	60470	2025-01-19	2024-06-07	3.26	3.32	3.25	3.3	0.005	0.81	1.0	0.04	17.60	0.00	2.195	7.58	0.45	4.8	95.2	0.1	-0.75	0.61	0.59	1.19	3.3	0.003	0.65	0.0	0.04	18.43	0.00	2.442	10.32	3.43	4.4	95.6	0.0	-0.23	1.13	0.62	0.61	0.74	14072	1694	4	0	0	0	0	logfile
✔	9FMV	50571	2025-01-17	2024-06-07	3.43	2.30	3.33	2.1	0.004	0.65	0.0	0.04	15.23	0.01	2.203	9.66	0.55	3.2	96.8	0.0	1.60	0.75	0.72	1.40	2.1	0.004	0.65	0.0	0.04	16.10	0.01	2.459	7.49	2.12	2.9	97.1	0.0	1.95	0.35	0.75	0.74	1.71	10272	1254	5	0	0	0	0	logfile
✔	9C6i	45247	2025-01-15	2024-06-07	2.56	3.19	2.65	2.9	0.008	0.68	0.0	0.04	25.62	0.01	1.892	11.33	0.00	0.0	0.0	0.0	—	0.92	0.89	—	2.9	0.010	0.74	0.0	0.05	25.15	0.01	1.844	9.20	0.00	0.0	0.0	0.0	—	1.28	0.93	0.93	—	8471	0	2	393	21	0	0	logfile
✔	9FMU	50570	2025-01-20	2024-06-07	4.46	4.84	4.61	4.6	0.005	1.18	4.0	0.07	13.08	0.01	1.959	20.15	0.00	4.3	95.4	0.3	-1.25	0.80	0.73	—	4.6	0.004	0.75	0.0	0.04	13.59	0.00	1.451	14.76	0.00	5.1	94.9	0.0	-0.23	1.69	0.82	0.79	—	14763	1919	10	0	10	0	0	logfile
✔	9C6K	45249	2025-01-13	2024-06-07	2.94	3.79	2.95	3.1	0.007	0.76	0.0	0.04	26.38	0.01	1.888	17.91	0.00	0.0	0.0	0.0	—	0.89	0.84	—	3.1	0.007	0.71	0.0	0.04	25.52	0.00	1.871	14.48	0.00	0.0	0.0	0.0	—	0.87	0.89	0.87	—	1745	0	2	80	9	0	0	logfile
✔	9C58	45207	2025-01-15	2024-06-06	4.7	4.87	4.69	4.8	0.003	0.73	0.0	0.05	10.28	0.00	1.776	1.47	0.00	2.9	97.1	0.0	0.63	0.70	0.62	—	4.7	0.005	0.76	0.0	0.04	6.86	0.00	1.906	3.11	0.00	8.4	91.6	0.0	-1.17	1.56	0.76	0.73	—	7954	1590	6	0	2	0	0	logfile
✔	9C5Q	45218	2025-01-18	2024-06-06	3.1	3.69	3.23	3.5	0.002	0.57	0.0	0.04	19.49	0.00	2.031	7.40	0.65	8.4	91.5	0.1	-2.00	0.76	0.81	1.49	3.5	0.003	0.59	0.0	0.04	19.68	0.00	2.511	5.81	4.44	9.5	90.3	0.1	-1.20	0.38	0.72	0.77	1.38	12324	1550	4	28	0	0	0	logfile
✔	9C5C	45214	2025-01-17	2024-06-06	3.6	2.97	3.61	3.9	0.004	0.73	0.0	0.04	15.74	0.00	2.202	20.64	0.08	2.7	97.3	0.0	0.79	0.67	0.57	0.91	3.9	0.004	0.83	0.0	0.04	17.34	0.00	2.399	18.43	3.68	3.7	96.3	0.0	1.03	1.10	0.68	0.68	0.85	11364	1429	4	0	0	0	0	logfile
✔	9C5B	45213	2025-01-21	2024-06-06	4.5	2.95	4.37	4.3	0.013	1.36	0.0	0.07	12.25	0.01	1.940	5.09	0.11	2.1	97.7	0.2	0.47	0.64	0.64	—	4.3	0.003	0.66	0.0	0.04	13.49	0.00	1.864	10.45	0.05	2.8	97.2	0.0	1.39	1.34	0.68	0.66	—	16874	2114	9	0	4	0	0	logfile
✔	8ZSZ	60435	2025-01-14	2024-06-06	3.59	3.78	3.47	3.7	0.017	1.81	9.0	0.09	14.91	0.01	1.624	28.95	2.63	2.4	97.6	0.0	-0.01	0.59	0.75	1.47	3.7	0.004	0.68	0.0	0.04	16.58	0.00	2.029	14.79	4.65	2.6	97.4	0.0	1.54	0.77	0.59	0.75	1.20	4754	630	4	0	8	0	0	logfile
✔	9C5A	45209	2025-01-20	2024-06-06	4.2	3.06	4.22	4.2	0.014	1.48	0.0	0.07	12.26	0.01	1.887	4.97	0.45	3.5	96.3	0.2	0.19	0.66	0.71	—	2.9	0.003	0.68	0.0	0.05	13.45	0.00	1.837	10.92	0.00	3.8	96.2	0.0	1.01	1.71	0.66	0.72	—	15806	1978	10	0	4	0	0	logfile
✔	9FLU	50539	2025-01-21	2024-06-05	3.4	3.67	3.38	3.6	0.018	1.52	0.0	0.08	8.06	0.02	2.030	3.67	0.00	1.2	98.8	0.0	1.79	0.76	0.82	3.85	3.6	0.004	0.57	0.0	0.05	11.15	0.00	2.336	4.72	3.55	1.9	98.1	0.0	1.24	1.61	0.73	0.86	3.86	16520	2324	7	0	0	0	0	logfile
✔	9FLX	50542	2025-01-22	2024-06-05	3.6	3.79	3.59	3.8	0.017	1.52	14.0	0.08	9.30	0.01	2.030	6.30	0.00	2.0	98.0	0.0	0.42	0.59	0.65	3.51	3.7	0.003	0.61	0.0	0.04	12.98	0.00	2.197	4.87	3.17	2.1	97.9	0.0	0.19	0.65	0.76	0.87	3.52	17675	2436	7	0	0	0	0	logfile
✔	9FLV	50540	2025-01-24	2024-06-05	3.6	3.82	3.60	3.8	0.018	1.89	14.0	0.09	8.99	0.01	1.202	7.43	0.00	1.0	99.0	0.0	1.29	0.76	0.83	2.82	3.8	0.005	0.64	0.0	0.05	12.80	0.01	2.541	5.04	3.17	2.3	97.7	0.0	0.10	0.66	0.77	0.85	3.11	20818	2905	7	0	0	0	0	logfile

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